BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37680.1
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947423 jgi|Araly1|947423|scaffold_703652.1 992 0.0
> Ahg947423 jgi|Araly1|947423|scaffold_703652.1
Length=596
Score = 992 bits (537), Expect = 0.0
Identities = 576/595 (97%), Gaps = 2/595 (0%)
Strand=Plus/Plus
Query 195 AAAAGATCAAATCTTTGGAGATGGGTCTTTGGGATTCACTTCTTAATTGGCTCCGGAGCT 254
||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||
Sbjct 1 AAAAGATCAAATCTTTGGAGATGGGTCTTTGGGATTCACTTCTCAATTGGCTCAGAAGCT 60
Query 255 TGTTTTTCAAACAAGAGATGGAGCTGTCACTCGTTGGACTTCAAAATGCTGGGAAGACTT 314
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGTTCTTCAAACAAGAGATGGAGCTGTCACTCGTTGGACTTCAAAATGCTGGGAAGACTT 120
Query 315 CTCTTGTCAATGCCATTGCTACTGGAGGTTACAGTGAAGATATGATACCAACTGTAGGAT 374
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 CTCTTGTCAATGCCATTGCTACTGGAGGTTATAGTGAAGATATGATACCAACTGTAGGAT 180
Query 375 TTAACATGAGGAAAGTTACAAAAGGAAATGTTACAATAAAGATTTGGGATCTTGGAGGGC 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTAACATGAGGAAAGTTACAAAAGGAAATGTTACAATAAAGATTTGGGATCTTGGAGGGC 240
Query 435 AACGAAGGTTTCGTACCATGTGGGAACGTTACTGTCGCGGTGTTTCCGCCATTGTATATG 494
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 241 AACGAAGGTTTCGTACCATGTGGGAACGTTATTGTCGTGGTGTTTCCGCCATTGTATATG 300
Query 495 TGATTGATGCTGCAGATCGAGATAGTGTACCGATATCAAGAAGCGAATTGAATGATCTGC 554
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 TGATTGATGCTGCAGATCGAGATAGTGTACCGATATCAAGAAGCGAATTGAATGATCT-C 359
Query 555 T-AACGAAACCGTCTTTAAATGGCATTCCTCTTCTGATTCTTGGCAACAAAATCGATAAG 613
| ||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 360 TTAACGAAACCGTCTTTAAATGGAATTCCTCTTCTGATTCTCGGCAACAAAATAGATAAG 419
Query 614 TCTGAAGCTCTCTCTAAGCAAGCTTTGGTTGATCAACTAGGGCTTGAATCTGTAACAGAC 673
|||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 420 TCTGAAGCTCTCTCCAAGCAAGCTTTGGTTGATCAACTAGGGCTTGATTCTGTAGCAGAC 479
Query 674 AGAGAGGTTTGCTGTTACATGATCTCGTGTAAGGACTCGATAAACATTGATGCGGTCATC 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGAGAGGTTTGCTGTTACATGATCTCGTGTAAGGACTCGATAAACATTGATGCGGTCATC 539
Query 734 GATTGGCTCATTAAGCACTCGAGAACTGCCACATAAACAGACACAACAAGCTCAT 788
|||||||||||||||||||||||||| || ||||| ||| |||||||||||||||
Sbjct 540 GATTGGCTCATTAAGCACTCGAGAACCGCTACATAGACAAACACAACAAGCTCAT 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36026156565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5