BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G38270.1 Length=1221 Score E Sequences producing significant alignments: (Bits) Value Ahg472265 jgi|Araly1|472265|fgenesh2_kg.1__2219__AT5G38270.1 1635 0.0 Ahg494155 jgi|Araly1|494155|fgenesh2_kg.7__3588__AT5G38270.1 1393 0.0 Ahg940704 jgi|Araly1|940704|scaffold_601248.1 743 0.0 Ahg896331 jgi|Araly1|896331|Al_scaffold_0005_297 466 2e-130 Ahg936150 jgi|Araly1|936150|scaffold_500341.1 459 3e-128 Ahg936152 jgi|Araly1|936152|scaffold_500343.1 412 2e-114 Ahg896329 jgi|Araly1|896329|Al_scaffold_0005_295 198 7e-50 Ahg480113 jgi|Araly1|480113|fgenesh2_kg.3__2814__AT2G04840.1 182 7e-45 > Ahg472265 jgi|Araly1|472265|fgenesh2_kg.1__2219__AT5G38270.1 Length=1221 Score = 1635 bits (885), Expect = 0.0 Identities = 1119/1231 (91%), Gaps = 20/1231 (2%) Strand=Plus/Plus Query 1 ATGTATACGCCAAACGATTCGATGAGAGAAGAGATAAGCCTAAAAGTGTTTGTAAATCAC 60 ||| |||||||||| |||| |||||||||||||||||| |||||||||| || ||||||| Sbjct 1 ATGGATACGCCAAATGATTTGATGAGAGAAGAGATAAGACTAAAAGTGTCTGAAAATCAC 60 Query 61 GATTGGTCCAAACTTTGTCCCGATATCTTACGGTCGATCCTCGAAAGCTTGAGCTCTACT 120 ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| | Sbjct 61 AATTGGTCCAAACTTTGTCCCGATCTCTTACGGTCGATTCTCGAAAGCTTGAGCTCTATT 120 Query 121 GATTTTCACCGAGCAAAAACTGTTTGCTCAGATTGGTATTCAAATTGGAAAACATGCGTG 180 |||||| ||||||||||||| ||||||| |||||||||||||| |||||||||||||||| Sbjct 121 GATTTTTACCGAGCAAAAACCGTTTGCTTAGATTGGTATTCAATTTGGAAAACATGCGTG 180 Query 181 AAGCCTCTTTGTCCATGGCGGATCATGTACGTAAAAGATTCATTGATGTTGTTCAAACCC 240 ||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 181 AAGCCTCTTTGTCTATGGCGGATCATATACGTAAAAGATTCTTTGATGTTGTTCAAACCC 240 Query 241 GGAGAAGACAAGATTTACAAAGGAACAAACGTTGGACTCTCCAACGACAGCTATTATATG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GGAGAAGACAAGATTTACAAAGGAACAAACGTTGGACTCTCCAACGACAGCTATTATATG 300 Query 301 GCTAGCTCCGGAAACTGGCTCTTGATGGTAGATTCTCATCTCGGTTTCTACATTTTTAAC 360 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 301 GCTAGCTCCGGAAACTGGCTCTTGATGGTCGATTCTCATCTCGGTTTCTACATTTTTAAC 360 Query 361 CTGTTAACGAGCAAAAGAATTGATCTTCCATCAATGGAGTCTTCAATTCGCGGTGGAAAA 420 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 361 ATGTTAACGAGCAAAAGAATTGATCTTCCATCAATGGAGTCTTCAATTCGGGGTGGAAAT 420 Query 421 GTGAGATTCGAGCAAAACCACGAGCATGGATTCAACTGGGGACACTTTGTCGAACCTTCT 480 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 421 GTGAGATTCGAGCGAAACCACGAGCATGGATTCATCTGGGGACACTTTGTCGAACCTTCT 480 Query 481 CGTAAGGTT-ACCGTGTCAAAAATAACCATCACACGGGAAAGTAGAGCTGTTCTGTGGAT 539 ||||||| | || ||||||||| |||||| ||||| ||| | || |||||||||||| Sbjct 481 CGTAAGGCTGAC-GTGTCAAAAGCCGCCATCATACGGGGAAGAACAGTTGTTCTGTGGAT 539 Query 540 AGACGAGAGAACAGGAGATTTTGTGGTTGCTTGGATTTTTAACTATCGTTACTTGTTCTC 599 |||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 540 AGACGAAAGAACAGGAGATTTTCTGGTTGCTTGGATTTTCAACTATCGTTACTTGTTCTC 599 Query 600 ATACAAGAAAGGAGATGATTCGTGGTGGAACTGGAATAACCATTGGAATATGGAAAGCTT 659 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | | Sbjct 600 ATACAAGAAAGGAGATGATTCGTGGTGGAATTGGAATAACCATTGGAATATGGAAAACCT 659 Query 660 GAATTTAAGTTTTTTGG-ATTTGGCTTACAGAAACAGCAAGCTTTATATCTACATTACTA 718 ||||| | |||||||| ||||||||| |||| ||| |||||||||| |||||| ||||| Sbjct 660 AAATTTCA-TTTTTTGGGATTTGGCTTGCAGATACAACAAGCTTTATCTCTACACTACTA 718 Query 719 A-GAGTCACATCAAAGTTGTTGATTTCTCTGGAAATGATCCCATAGAAGTAATCGATAAA 777 | | |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 719 ATG-GTCACATCAAAGTTATTGATTTCTCTGGAAATGATCCCATAGAAGTAATCGAAAAA 777 Query 778 AACCCGTATTGGGAACATCCGTTTCGATACTTAACCAAAAAAGGGGAATA-CATTAATAA 836 |||||||||||||||||||| |||||||||||||||||| ||| |||| | |||| | | Sbjct 778 AACCCGTATTGGGAACATCCATTTCGATACTTAACCAAACAAGAGGAA-AGCATTCTTCA 836 Query 837 GAGGAGAATAGCGATTCAGAAATCAGGAGACGTTTTGATTATCTTGAGTGTATTAGCACA 896 || ||||| ||||||||||||||||||||||||||||||||||||||| || | || | Sbjct 837 TAGTAGAATCGCGATTCAGAAATCAGGAGACGTTTTGATTATCTTGAGTATAGTCTCA-A 895 Query 897 -AAGATCAAAAGAGAAAGTTTTATTTTACATCTTTAAGATGAATCTTGCGAGTAAAATAT 955 ||| || | ||||| | ||| ||||| |||||||| ||||||||||| |||||||||| Sbjct 896 TAAGTTCGACAGAGATACCTTTGTTTTATATCTTTAAAATGAATCTTGCAAGTAAAATAT 955 Query 956 GGGAAAGAGTAGAATCTATTGGAGATGATGAGATGTTGATCTTTGGTCATGGGGTTACGA 1015 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 956 GGGAGAGAGTAGAATCTATTGGAGATGATGAGATGTTGATCTTTGGTCATGGGGTTACAA 1015 Query 1016 TAAGAGCACCGGTTCAAGATGTTGGTGATGGAATCAAGAGTGGTTCAATATGTTTCGTCA 1075 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct 1016 TAAGAGCACCGGTTCAAGATGTTGGTGATGGAATCAAGAGTGGTTCAATATATTTCGTTA 1075 Query 1076 --GT-GACGTATGGCCACCATATTATTCTCCTGCTGCTACAAATTGGGGTGTCTTCGATC 1132 | ||| ||||| || ||| ||| || ||||| | ||||||| ||||||||||||| Sbjct 1076 AAGAAGACTTATGGACA--ATAG-ATTTTCATGCTGTTTCAAATTGCGGTGTCTTCGATC 1132 Query 1133 TTGCAACAAGTATAATCAAATGGTCTAAG-AAAGACAGTTTTAATAATAGATATGTT-CA 1190 |||||||||||| |||||||||||||||| ||| ||||||||||||||| ||||||| || Sbjct 1133 TTGCAACAAGTAAAATCAAATGGTCTAAGGAAA-ACAGTTTTAATAATAAATATGTTACA 1191 Query 1191 AACTTATTTGTTTTTTCCAGGATTTGCTTAG 1221 | || | |||| ||||||||||| ||||| Sbjct 1192 A-CTCGGTGGTTTGTTCCAGGATTTTCTTAG 1221 > Ahg494155 jgi|Araly1|494155|fgenesh2_kg.7__3588__AT5G38270.1 Length=1236 Score = 1393 bits (754), Expect = 0.0 Identities = 1092/1250 (87%), Gaps = 43/1250 (3%) Strand=Plus/Plus Query 1 ATGTATACGCCAAACGATTCGATGAGAGAAGAGATA-AGCCTAAAAGTGTTTGTAAATCA 59 ||| ||||||||||||||| ||||| |||||||| | || | |||||||| || |||||| Sbjct 1 ATGGATACGCCAAACGATTTGATGAAAGAAGAGA-AGAGACGAAAAGTGTCTGAAAATCA 59 Query 60 CGATTGGTCCAAACTTTGTCCCGATATCTTACGGTCGATCCTCGAAAGCTTGAGCTCTAC 119 ||||||||||||||||| ||| ||| | ||||||||||| ||||||||||||| ||||| Sbjct 60 CGATTGGTCCAAACTTTATCCTGATCTTTTACGGTCGATACTCGAAAGCTTGAACTCTAT 119 Query 120 TGATTTTCACCGAGCAAAAACTGTTTGCTCAGATTGGTATTCAAATTGGAAAACATGCGT 179 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 120 TGATTTTCACCGAGCAAAAACTGTTTGCTCAGATTGGTATTCAATTTGGAAAACATGCGT 179 Query 180 GAA--G-CCTCTTTGTCCATGGCGGATCATGTACGTAAAAGATTCATTGATGTTGTTCAA 236 ||| | ||||||||||||||||||||||| ||||||||| |||| |||||||||||||| Sbjct 180 GAAGCGTCCTCTTTGTCCATGGCGGATCATATACGTAAAATATTCTTTGATGTTGTTCAA 239 Query 237 ACCCGGAGAAGACAAGATTTACAAAGGAACAAACGTTGGACTCTCCAACGACAGCTATTA 296 ||| ||||||||||||| ||| ||||||||||||||||||||||||| |||||||||| Sbjct 240 TCCCCGAGAAGACAAGATCTACGAAGGAACAAACGTTGGACTCTCCAAAGACAGCTATTT 299 Query 297 TATGGCTAGCTCCGGAAACTGGCTCTTGATGGTAGATTCTCATCTCGGTTTCTACATTTT 356 ||||||| ||||||| || |||||||||||||||||||||||||||| ||| |||||||| Sbjct 300 TATGGCTGGCTCCGGGAATTGGCTCTTGATGGTAGATTCTCATCTCGATTTTTACATTTT 359 Query 357 TAACCTGTTAACG-AGCAAAAGAATTGATCTTCCATCAATGGAGTCTTCAATTCGCGGTG 415 ||||||||||||| | ||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 360 TAACCTGTTAACGTA-CAAAAGAATCGATCTTCCATCTATGGAGTCTTCAATTCGCGGTG 418 Query 416 GAAAAGTGAGATTCGAGCAAAACCACGAGCATGGATTCA---ACTGGGGACACTTTGTCG 472 | || ||||||||||||| ||||| |||||||||||||| | |||||||||||||| | Sbjct 419 GGAATGTGAGATTCGAGCGAAACCGCGAGCATGGATTCAGCGAGTGGGGACACTTTGTTG 478 Query 473 AACCTTCTCGTAAGGTTACCGTGTCA-AAAATA-ACCATCACACG-GGAAAGTA-GAGCT 528 | || | |||||||| | |||| | ||| | | ||||| | | | ||| | |||| Sbjct 479 ATCCATGTCGTAAGG--ATTGTGTGAGGAAAGACATCATCATATGCCG-AAG-ATCAGCT 534 Query 529 GTTCTGTGGATAGACGAGAGAACAGGAGATTTTGTGGTTGCTTGGATTTTTAACTATCGT 588 ||| | |||||||| |||| ||||||||||| |||||||||||||||||| || |||| | Sbjct 535 GTTTTATGGATAGATGAGAAAACAGGAGATTATGTGGTTGCTTGGATTTTCAATTATCAT 594 Query 589 TACTTGTTCTCATACAAGAAAGGAGATGATTCGTGGTGGAACTGGAATAACCATTGGAAT 648 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 595 TACTTATTCTCATACAAGAAAGGAGATGATTCGTGGTGGAACTGGAATAACCATTTGAGT 654 Query 649 ATGGAAAGCTTGAATTTAAGTTTTTTGGATTTGGCTTACAGAAACAGCAAGCTTTATATC 708 ||||||||| | ||||| ||||||||||| |||||||| |||||||||||||||||| || Sbjct 655 ATGGAAAGCCTAAATTTCAGTTTTTTGGACTTGGCTTATAGAAACAGCAAGCTTTATCTC 714 Query 709 TACATTACTAA-GAGTCACATCAAAGTTGTTGATTTCTCTGGAAATGATCCCATAGAAGT 767 || | ||||| | ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 715 TATACCACTAATG-GTCACATCAAAATTGTTGATTTCTCTGGAAATGATCCCATAGAAGT 773 Query 768 AATC-GATAAAAACCCGTATTGGGAACATCCGTTTCGATACTTAACCAAAAAAGGGGAAT 826 |||| || |||||||| |||||||||||||||||||||||||| | ||||||||||||| Sbjct 774 AATCGGA-AAAAACCCATATTGGGAACATCCGTTTCGATACTTTTCAAAAAAAGGGGAAT 832 Query 827 AC-ATTAATAAGAGGAGAATAG-CGATTCAGAAATCAGGAGACGTTTTGATTATCTTGAG 884 || ||| || | || ||||| | ||||||||||||||||||||||||||||||||||| Sbjct 833 ACAATT-GCAAAAAGAAAATAGTC-ATTCAGAAATCAGGAGACGTTTTGATTATCTTGAG 890 Query 885 TGTATTAGCACA-AAGATCAAAAGAGAAAGTTTTATTTTACATCTTTAAGATGAATCTTG 943 || ||||| | ||||| || || ||| |||| |||||||||||||||||||| | || Sbjct 891 TGCATTAG-TGATGAGATCGAAGGACAAAATTTTGTTTTACATCTTTAAGATGAACCCTG 949 Query 944 CGAGTAAAATATGGGAAAGAGTAGAATCTATTGGAGATGATGAGATGTTGATCTTTGGTC 1003 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 950 AGAGTAACATATGGGAAAGAGTAGAATCTATTGGAGATGATGAGATGTTGATCTTTGGTC 1009 Query 1004 ATGGGGTTACGATAAGAGCACCGGTTCA--A-G---ATGTTGGTGATG--G-AATCAAGA 1054 |||||||||| ||||||||||| ||||| | | |||||||||||| | |||||||| Sbjct 1010 ATGGGGTTACAATAAGAGCACCCGTTCACGATGTTGATGTTGGTGATGATGGAATCAAGA 1069 Query 1055 GTGGTTCAATATGTTTCG-TC-AG-TGACGTATGGCCACCATATTATTCTCCTGCTGCTA 1111 |||||||||| | ||||| | || |||| || |||| |||| ||| || ||||| | Sbjct 1070 GTGGTTCAATCTATTTCGCTGTAGATGACTTACAGCCA--ATAT-ATTATCATGCTGTTT 1126 Query 1112 CAAATTGGGGTGTCTTCGATCTTGCAACAAGTATAATCAAATGGTCTAAGAAAGACAGTT 1171 ||||||| |||||||| ||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1127 CAAATTGCGGTGTCTTTGATCTTGCAACAAGTATAATCAAATGGCCTAAGGAAGACAGTT 1186 Query 1172 TTAATAATAGATATGTTCAAACTTATTTGTTTTTTCCAGGATTTGCTTAG 1221 |||||||||||| |||| ||||| | | |||| ||||||||||||||||| Sbjct 1187 TTAATAATAGATTTGTTAAAACTCAGTGGTTTGTTCCAGGATTTGCTTAG 1236 > Ahg940704 jgi|Araly1|940704|scaffold_601248.1 Length=1186 Score = 743 bits (402), Expect = 0.0 Identities = 919/1155 (80%), Gaps = 89/1155 (8%) Strand=Plus/Plus Query 43 AAAGTGTTTGTAAATCACGATTGGTCCAAACTTTGTCCCGATATCTTACGGT-CGATCCT 101 ||| ||| || |||||| ||||||||||| | |||| ||||| | |||| || |||| | Sbjct 20 AAA-TGTCTGAAAATCAAGATTGGTCCAATCATTGTGCCGATCTTTTAC-GTCCGATAAT 77 Query 102 CGAAAGCTTGAGCTCTACTGATTTTCACCGAGCAAAAACTGTTTGCTCAGATTGGTATTC 161 ||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||| || Sbjct 78 CGAAAGCTTGAGCACTATTGATTATCACCGAGCAAAAAAAGTTTGCTCAGATTGGTACTC 137 Query 162 AAATTGGAAAACATGCGTGAA---GCCTCTTTGTCCATGGCGGA-TCATGTA-CGTAAAA 216 |||||||||||||||||| |||||| | |||||||| | |||| || | | | Sbjct 138 CGTTTGGAAAACATGCGTGAAGCGGCCTCTGTATCCATGGC-AATTCATATACCAT-GAT 195 Query 217 GATTCATT-GATG-TTGTTCAAACCCGGAGAAGACAAGATTTACAA-AGGAACAAACGTT 273 ||||| || || | |||||| | |||||||| |||||||||||||| | ||| | |||| Sbjct 196 GATTC-TTCGA-GTTTGTTCGATCCCGGAGAGGACAAGATTTACAACACGAA-ACTCGTT 252 Query 274 GGACTCTCCAACGACAGCTATTATATGGCTAGCTCCGGAAACTGGCTCTTGATGGTAGAT 333 ||| ||||| || | ||||| ||||||||||||| |||||| || || |||||||||||| Sbjct 253 GGAATCTCCGACAAAAGCTACTATATGGCTAGCTTCGGAAATTGCCTATTGATGGTAGAT 312 Query 334 TCTCATCTCGGTTTCTACATTTTTAACCTGTTAACGAGCAAAAGAATTGATCTTCCATCA 393 |||| |||| |||||| || ||||| |||||||| || ||||||| ||||||||||| Sbjct 313 TCTCTTCTCCATTTCTATATCGTTAACATGTTAACGTGCGAAAGAATCAATCTTCCATCA 372 Query 394 ATGGAGTCTTCAATTCGCGGTGGAAAAGTGAGATTCGAGCAAAACCACGAGCATGGAT-T 452 |||||| | ||||| |||||||| | |||||||| | |||| | ||| || | Sbjct 373 ATGGAGACGTCAATACGCGGTGGGCACGTGAGATT----C-AAACGA--AGC--GG-TGA 422 Query 453 CAACTGGGGACACTTTGTCGAAC-CTTCTCGTAAGGTTAC-CGTGTCAAAAATA-ACCAT 509 | | ||||| |||| || | || || |||||||| | | ||||| ||| | | | | Sbjct 423 CGAGTGGGGTTACTTCGTTG-ACTTTTATCGTAAGGAT-CGAGTGTC-TAAAGACATCTT 479 Query 510 CACACGGGAAAGTA-GAGCTGTTCTGTGGATAGACGAGAGAACAGGAGATT-TTGTGGTT 567 | | ||||| | |||||||||||||||| |||| ||||||||||||| || | ||| Sbjct 480 TGGAAGCGAAAG-ATCAGCTGTTCTGTGGATAAACGAAAGAACAGGAGATTATT-TCGTT 537 Query 568 GCTTGGATTTTTAACT-ATCGTT-ACTTGTTCTCATACAAGAAAGGAGATGATTCGTGGT 625 ||||||||||| || | | | || | |||||| || |||||||||||||||||| |||| Sbjct 538 GCTTGGATTTTCAA-TAAGC-TTGAGTTGTTCACACACAAGAAAGGAGATGATTATTGGT 595 Query 626 GGAACTGGAATAACCATTGGAATATGGAAAGCTTGAATTTAAGTTTTTTGGATTTGGCTT 685 |||| ||| || | | || | || || ||||| |||| ||||||||||||| Sbjct 596 GGAATTGGTAT-A-C-----AAGA-GG--TGC--AAATTTGGGTTTCTTGGATTTGGCTT 643 Query 686 A-CAGAAACAGCAAGCTTTATATCTACATTACT-AAGAGTCACATCAAAG-TTGTTGATT 742 | || ||||||||||||||| | || ||| || | || ||||||| ||| |||| |||| Sbjct 644 ATAAG-AACAGCAAGCTTTATCTGTATATTTCTGATGA-TCACATC-AAGATTGTCGATT 700 Query 743 TCTCTGGA-AATGATCCCATAGAAGTAA-TCGATAAAAACCCGTATTGGGAACATCCGTT 800 |||||||| | || |||| ||||| || |||| ||||||||||||||||| |||||||| Sbjct 701 TCTCTGGAGATTG-CCCCAAAGAAG-AAGTCGAGAAAAACCCGTATTGGGATCATCCGTT 758 Query 801 TCGA-TAC-TTAACCAAAAAAG-GGGAATACATTAATAAGAGGAGAATAGCGATTCAGAA 857 | || ||| || ||||| || |||| ||| || |||| |||||||| ||||||||| Sbjct 759 T-GATTACGTT--TCAAAACAGTGGGAGTACGTTTGGAAGACGAGAATAGTGATTCAGAA 815 Query 858 ATCAGGAGACGTTTTGATTATCTTGAGTGTATTAGCACAAAG--ATCAAAAGAGAAAGTT 915 | ||||||| ||||| || ||||||||| |||||| | |||| || |||||||| | | Sbjct 816 AACAGGAGAGGTTTTCATCATCTTGAGTTTATTAG-A-AAAGCTATTAAAAGAGACACAT 873 Query 916 TTATTTTACATCTTTAAGATGAATCTTGCGAGTAA-AATATGGGAAAGAGTAGAATCTAT 974 || ||||||||||||||||||||| ||| |||||| || ||||||||||||||| ||||| Sbjct 874 TTGTTTTACATCTTTAAGATGAATTTTGAGAGTAACAA-ATGGGAAAGAGTAGATTCTAT 932 Query 975 TGGAGATGATGAGATGTTGATCTTTGGTCATGGGGTTACGA-TAAGAGCACCGGTTCAAG 1033 ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 933 TGGAGATGATGAGATGTTGATCTTTGGTCATGGGGTTAC-ACTAAGAGCACCGGTTCAAG 991 Query 1034 ATGTTGGTGATGGAATCAAGAGTGGTTCAATATGTTTCGTC-A-G-TGACGTAT---GGC 1087 | ||||||||||||||||||||||||||||| |||||||| | | |||| | | ||| Sbjct 992 AAGTTGGTGATGGAATCAAGAGTGGTTCAATCTGTTTCGTTGAAGATGACCTTTTTTGGC 1051 Query 1088 CACCATATTATTCTCCTGCTGCTACAAATTGGGGTGTCTTCGATCTTGCAACAAGTATAA 1147 | |||||| ||| | || | | ||||| ||||||||||| ||||| ||||||| || Sbjct 1052 TAA-ATATTAGTCTTC--CT--T-CGAATTGTGGTGTCTTCGAACTTGCCACAAGTAGAA 1105 Query 1148 TCAAATGGTCTAAGA 1162 ||||||||| ||||| Sbjct 1106 TCAAATGGTTTAAGA 1120 > Ahg896331 jgi|Araly1|896331|Al_scaffold_0005_297 Length=1398 Score = 466 bits (252), Expect = 2e-130 Identities = 669/859 (78%), Gaps = 73/859 (8%) Strand=Plus/Plus Query 61 GATTGGTCCAAACTTTGTCCCGATATCTTACGGTCGATCCTCGAAAGCTTGAGCTCTACT 120 ||||||||||| |||||||| || | || || ||| |||||||||||| ||||| | Sbjct 52 GATTGGTCCAAGCTTTGTCCTGACCTTTTGCGAAAGATTATCGAAAGCTTGAACTCTATT 111 Query 121 GATTTTCACCGAGCAAAAACT-GTTTGCTCAGATTGGTATTCAAATTGGAAAACATGCGT 179 || | |||||||| |||||| |||||||||||||||||||| ||||||||||||||| Sbjct 112 GACTACCACCGAGC-AAAACTCGTTTGCTCAGATTGGTATTCGGTTTGGAAAACATGCGT 170 Query 180 GAA---GCCTCTTTGTCCATGGCGGATCATGTACGTA--A--AAGATTCATT-GATG-TT 230 ||| |||||| | ||||||||||||||| ||| || | | ||||| || || | || Sbjct 171 GAAGCGGCCTCTGTATCCATGGCGGATCATATAC-TATGATGATGATTC-TTCGA-GTTT 227 Query 231 GTTCAAACCCGGAGAAGACAAGATTTAC-AAAGGAACAA-ACGTTGGACTCTCCAACGAC 288 |||| | ||| ||||| ||||| ||||| ||| || || | | ||||| || || | Sbjct 228 GTTCGATCCCAGAGAAAACAAGTTTTACGAAA-CAA-AACTCCTCGGACTTTCTGACAAT 285 Query 289 AGCTATTATATGGCTAGCTCCGGAAACTGGCTCTTGATGGTAGATTCTCATCTCGGTTTC 348 |||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||| Sbjct 286 AGCTATTATATGGCTAGCTCCGGAAACTGGCTCTTGATGGTACATTCTCGTCTCGATTTC 345 Query 349 TACATTTTTAACCTGTTAACGAGC-AAAAGAATTGATCTTCCATCAATGGAGTCTTCAAT 407 || |||||||||||||||||| || |||||| | ||||||| ||||||||||| ||||| Sbjct 346 TATATTTTTAACCTGTTAACGTGCGAAAAGA-TCAATCTTCCCTCAATGGAGTCGTCAAT 404 Query 408 TCGCGGTGGAAAAGTGAGATTCGAGCAAAAC--C-AC-G-AG-CATGGATTCAACTGGGG 461 ||||||||||||||| |||||||||| || | | || | || || || ||| ||||| Sbjct 405 TCGCGGTGGAAAAGTAAGATTCGAGCCAAGCAGCGACTGTAGACAAGG---CAAGTGGGG 461 Query 462 ACACTTTGTCGAACCTTCTCGTAAGGTTACCGTGTCAAAAATAACCATCACACGGG-A-A 519 |||||| ||||| | || | ||||| | ||||||| ||| | | ||| ||| | | Sbjct 462 ACACTTGGTCGATCATTTTTGTAAGACTCCCGTGTCGAAAG-A-C-ATCTTG-GGGTACA 517 Query 520 AGTAGAGC--T-GTTCTGTGGATAGACGAGAGAACAGGAGATT-TTGTGGTTGCTTGGAT 575 | ||| | | ||||| |||||| ||||||| |||| |||| || | ||||||||||| Sbjct 518 AA-AGATCAGTTGTTCTTTGGATAAACGAGAGGGCAGGGGATTATT-TCGTTGCTTGGAT 575 Query 576 TTTTAACTATCGTTACT-TGTTCTCATACAAGAAAGGAGATGATTCGTGGTGGAACTGGA 634 ||| || | | || | ||||| || ||||||||||||||||||| ||||||||||||| Sbjct 576 TTTCAAGAACCAATA-TATGTTCACACACAAGAAAGGAGATGATTCTTGGTGGAACTGGA 634 Query 635 ATAACCATTGGAATATGGAAAGCTTGAATTTAAGTTTTTTGGATTTGGCTTACA-GAAAC 693 |||| ||||| ||| | | ||| |||| |||||||||||| | | | | Sbjct 635 ATAATAATTGGGATA-------C--G--TTTC--TTTT--GGATTTGGCTTATAAGCA-C 678 Query 694 AGCAAGCTTTATATCTACA-TTACTAAGAGTCACATCAA-AGTTGTTGATTTCTCTGGAA 751 | |||||||||| | || | |||| | || || |||||| | || |||||||||||||| Sbjct 679 AACAAGCTTTATCTGTATACTTACCACGATTC-CATCAAGA-TTATTGATTTCTCTGGAG 736 Query 752 ATGATCCCATA--GAAGTAATCGATAAAAA-CCCGTATTGGGAACATCCGTTTCGA-TAC 807 || |||| || |||| ||| | ||||| |||||||||||| |||||||||| | ||| Sbjct 737 AT--TCCCCTAAAGAAGAAATAAAAAAAAAACCCGTATTGGGATCATCCGTTTC-ACTAC 793 Query 808 TTA-ACCAAAAAAGGGGAATACATTAATAAGAGGAGAATAGCGATTCAGAAATCAGGAGA 866 | | |||||||||| ||| |||||||||||||| ||||||||||||||||| Sbjct 794 C-ACATTTCGCAAGGGGAATATATTTGGAAGAGGAGAATAGCCATTCAGAAATCAGGAGA 852 Query 867 CGTTTTGATTATCTTGAGT 885 |||||| | ||||||||| Sbjct 853 GGTTTTGGTCATCTTGAGT 871 Score = 104 bits (56), Expect = 2e-21 Identities = 106/128 (83%), Gaps = 12/128 (9%) Strand=Plus/Plus Query 1017 AAGAGCACCGGTTCAAGATGTTGGTGATGGAATCAAGAGTGGTTCAATATGTTTCGTCA- 1075 ||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||| | Sbjct 882 AAGGGCACCGGTTCAAGATGTTGGTGATGGAATCAAGACTGGTTCAATCTGTTTCGTTAA 941 Query 1076 -G-TGACGTATGGCCACCATATTATTCTCCTGCTGCTACAAATTGGGGTGTCTTCGATCT 1133 | |||||| | |||| |||||| | || | | ||||||| |||||||||||||| Sbjct 942 AGATGACGTTTCGCCA---TATTATA-TG-TG-T--T-CAAATTGCGGTGTCTTCGATCT 992 Query 1134 TGCAACAA 1141 ||| |||| Sbjct 993 TGCCACAA 1000 > Ahg936150 jgi|Araly1|936150|scaffold_500341.1 Length=1187 Score = 459 bits (248), Expect = 3e-128 Identities = 571/719 (79%), Gaps = 54/719 (8%) Strand=Plus/Plus Query 383 ATCTTCCATCAATGGAGTCTTCAATTCGCGGTGGAAAAGTGA-GATTCGAGCAAAACCAC 441 |||| |||||||| |||||| ||||||| |||| | |||| | |||| |||| || | Sbjct 334 ATCTACCATCAATAGAGTCTCCAATTCGTGGTGCACAAGT-ACGATTTGAGCGAAGCGGT 392 Query 442 GAG-CATGGATTCAAC-TGGGGACACTTTGTCGAACCTTCTCGTAAGGTTACCGTGTCAA 499 ||| || ||| | || ||||||||||||||||| |||| |||||||| || ||||| Sbjct 393 GAGTCA-AGATAC-ACGTGGGGACACTTTGTCGAGCCTTGTCGTAAGGATAATGTGTC-G 449 Query 500 AAATAACCATC--ACAC-GGGAAAG-T-A-GAGCTGTTCTGTGGATAGACGAGAGAACAG 553 ||| | |||| ||| | |||| | | ||| ||||||||||||| |||||||||||| Sbjct 450 AAA-GA-CATCTTGCACTGCAAAAGATCAGGAGTTGTTCTGTGGATAAACGAGAGAACAG 507 Query 554 GAGATTTTGTGGTTGCTTGGATTTT-TAACTATCGTTACTTGTTCTCATACAAGAAAGGA 612 | |||| ||| |||||||||||||| ||| | |||||||||| |||||||||||||| Sbjct 508 GGGATTATGTCGTTGCTTGGATTTTGAAAC-GGCATTACTTGTTCACATACAAGAAAGGA 566 Query 613 GATGATTCGTGGTGGAACTGGAATAACCATTGGAATA-TGGAAAGC-TTGAATTTAAGTT 670 ||||||||||||||||| |||||||| |||||| || || || ||||| ||| Sbjct 567 GATGATTCGTGGTGGAATTGGAATAAGGATTGGATTACCGG--TGCGAAAAATTTGGGTT 624 Query 671 TTTTGGATTTGGCTTA-CAGAAACAGCAAGCTTTATATCTACATTACTAAGAGTCACATC 729 ||||||| ||||||| || ||||| ||||||||| |||||| || | | |||||| Sbjct 625 ATTTGGATGTGGCTTATAAG-AACAGTAAGCTTTATCTCTACACCACCGATAACCACATC 683 Query 730 AAAG-TTGTTGATTTCTCTGGAAATGATCCCAT-A-GAAGTAATCGATAAA-AACCCGTA 785 ||| || | |||||||||||| || |||| | | |||| |||||| ||| |||||||| Sbjct 684 -AAGATTATCGATTTCTCTGGAGAT-TTCCC-TAAGGAAGAAATCGA-AAATAACCCGTA 739 Query 786 T-TGGGAACATCCGTTTCGATACT-T-AACC-AAAAAAGGGGAA--TACATTAATAAGAG 839 | | ||| ||||| ||| | ||| | || | | ||| ||| || ||||| Sbjct 740 TCT-GGATCATCC-TTT-TA-ACTATGCTCCGCGTGGATGTGAAGTTAC-TT-CGAAGAG 793 Query 840 GAGAATAGCGATTCAGAAATCAGGAGACGTTTTGATTATCTTGAGTGTATTAGCAC-AA- 897 ||||||||| ||||||||||||||||| |||||||| ||||||| | |||| || || Sbjct 794 GAGAATAGCCATTCAGAAATCAGGAGAGGTTTTGATCATCTTGA--AT-TTAGTACTAAT 850 Query 898 AGATCAAAAGAGAAAGTTTTATTTTACATCTTTAAGATGAATCTTGCGAGT-AAAATATG 956 | | |||| ||| |||| ||||||||||||||||||||||||| |||| || ||| Sbjct 851 TGGT-GAAAG-CAAACTTTTGTTTTACATCTTTAAGATGAATCTTGAGAGTGGCAA-ATG 907 Query 957 GGAAAGAGTAG-AATCTATTGGAGATGATGAGATGTTGATCTTTGGTCATGGGGTTACGA 1015 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 908 GGAAAGAGT-GCAATCTATTGGAGATGATGAGATGTTGATCTTTGGTCATGGGGTTACAA 966 Query 1016 TAAGAGCACCGGTTCAAGATGTTGGTGATGGAATCAAGAGTGGTTCAATATGTTTCGTC 1074 |||||||||||||||||||||||||||| ||||||||||||||||| || | ||||||| Sbjct 967 TAAGAGCACCGGTTCAAGATGTTGGTGACGGAATCAAGAGTGGTTCTATCTTTTTCGTC 1025 > Ahg936152 jgi|Araly1|936152|scaffold_500343.1 Length=1216 Score = 412 bits (223), Expect = 2e-114 Identities = 466/576 (81%), Gaps = 45/576 (8%) Strand=Plus/Plus Query 525 AGCTGTTCTGTGGATAGACGAG-AGAACAGGAGATTTTGTGGTTGCTTGGATTTTT-AAC 582 |||||||||||||||| ||||| || || || |||| ||||||||||||||||||| ||| Sbjct 617 AGCTGTTCTGTGGATAAACGAGAAG-ACGGGTGATTATGTGGTTGCTTGGATTTTTAAAC 675 Query 583 TATCGTTACTTGTTCTCATACAAGAAAGGAGATGATTCGTGGTGGAACTGGAATAACCAT 642 | | |||||||||| ||||||||||||||||||| || ||||||||||||||||| | Sbjct 676 -AGCATTACTTGTTCACATACAAGAAAGGAGATGAATCATGGTGGAACTGGAATAATAAC 734 Query 643 TGG-AATAT-GG--AA--A-GCTTGAATTTAAGTTTTTTGGATTTGGCTTACAG-AAACA 694 ||| ||| | || || | || | ||||| ||| ||||||||||||||| | ||||| Sbjct 735 TGGAAAT-TCGGTCAAGGACGCGTAAATTTGGGTTATTTGGATTTGGCTTA-TGAAAACA 792 Query 695 GCAAGCTTTATATCTACATTA-CTAAGAGTCACATCAAAG-TTGTTGATTTCTCTGGAAA 752 ||||||||||| |||| | || | | | |||||||| ||| || | ||||||||||| | Sbjct 793 GCAAGCTTTATCTCTATACTACCGATG-GTCACATC-AAGATTATCAATTTCTCTGGAGA 850 Query 753 TGATCCCAT-A-GAAGTAATCGATAAA-AACCCGTAT-TGGGAACATCCGTTTCGATACT 808 | |||| | | |||| |||||| ||| ||||||||| | ||| ||||| ||| | ||| Sbjct 851 T-TTCCC-TAAGGAAGAAATCGA-AAATAACCCGTATCT-GGATCATCC-TTT-TA-ACT 903 Query 809 -T-AACC-AAAAAAGGGGAA-TACATTAATAAGAGGAGAATAGCGATTCAGAAATCAGGA 864 | || | | |||| | ||| | |||||||||||| ||||||||||||||| Sbjct 904 ATGCTCCGCATGGATTGGAACT-TATTTCGAGGAGGAGAATAGCCATTCAGAAATCAGGA 962 Query 865 GACGTTTTGATTATCTTGAGTGTATT---AGCAC-AA-AGATCAAAAGAGAAAGTTTTAT 919 || |||||||| ||| ||||| |||| || || || ||| |||||| | |||| | Sbjct 963 GAGGTTTTGATCATCGTGAGTTTATTAGAAGTACGAATTGAT-GAAAGAG-CACTTTTGT 1020 Query 920 TTTACATCTTTAAGATGAATCTTGCGAGT-AAAATATGGGAAAGAGTAG-AATCTATTGG 977 |||||||||||||||||||||||| |||| || ||||||||||| || | |||||||| Sbjct 1021 TTTACATCTTTAAGATGAATCTTGAGAGTGGCAA-ATGGGAAAGAG-AGCATTCTATTGG 1078 Query 978 AGATGATGAGATGTTGATCTTTGGTCATGGGGTTACGATAAGAGCACCGGTTCAAGATGT 1037 ||||||||||||| | || ||||||||||||||||| ||||||||||||||||||||||| Sbjct 1079 AGATGATGAGATGATAATATTTGGTCATGGGGTTACAATAAGAGCACCGGTTCAAGATGT 1138 Query 1038 TGGTGATGGAATCAAGAGTGGTTCAATATGTTTCGT 1073 ||||||||||||||||| ||||||||| |||||||| Sbjct 1139 TGGTGATGGAATCAAGACTGGTTCAATCTGTTTCGT 1174 > Ahg896329 jgi|Araly1|896329|Al_scaffold_0005_295 Length=852 Score = 198 bits (107), Expect = 7e-50 Identities = 282/362 (78%), Gaps = 30/362 (8%) Strand=Plus/Plus Query 238 CCCGGAG-AAGACAAGATTTACAAAGGAACAAA--C-GTT-GGACTCTCCAACGACAGCT 292 ||| ||| |||| |||||||||||| || ||| | || |||||||| || | ||| Sbjct 78 CCCAGAGAAAGA-AAGATTTACAAA--AA-AAAGCCTCTTCGGACTCTCTGACAATAGCC 133 Query 293 ATTATATGGCTAGCTCCGGAAACTGGCTCTTGATGGTAGATTCTCATC-TCGGTTTCTAC 351 ||||| |||||||||| ||||| ||| ||||||||||| ||||| || | | |||||| Sbjct 134 ATTATGTGGCTAGCTCAGGAAATTGGTTCTTGATGGTATATTCTTGTCAT-GATTTCTAT 192 Query 352 ATTTTTAACCTGTTAACGA-GC-AAAAGAATTGATCTTCCATCAATGGAGTCTTCAATTC 409 ||||||||||| || || | || ||||||| | ||||||||||||| ||| ||| |||| Sbjct 193 ATTTTTAACCTATTCAC-AGGCAAAAAGAACAG-TCTTCCATCAATGAAGTATTCCATTC 250 Query 410 GCGGTGGAAAAGTGAGATTCGAGCAAAACCACGAGC-ATGGA-T-T-CAACTGGGGACAC 465 |||||||||||||||||||||||| || | || | || || | | ||| ||||||||| Sbjct 251 GCGGTGGAAAAGTGAGATTCGAGCCAAGCGGTGA-CTATAGACTCTACAATTGGGGACAC 309 Query 466 TTTGTCGAACCTTCTCGTAAGG-TT-ACCGTGTCAAAA-ATAACCATCACACGGGAAAG- 521 || ||||| | || ||||| || || || ||||| ||| | | || || | | |||| Sbjct 310 TTCGTCGATCATTTTCGTA-GGATTTAC-GTGTCGAAAGACA-CCTTCGGATGCAAAAGA 366 Query 522 TAGAGCTGTTCTGTGGATAGACGAGAGAACAGGAGATT-TTGTGGTTGCTTGGATTTTTA 580 | ||||||||| ||||||||||| || ||||| |||| || | ||||| |||||||| | Sbjct 367 TC-AGCTGTTCTTTGGATAGACGAAAGGACAGGGGATTATT-TCGTTGCATGGATTTTGA 424 Query 581 AC 582 || Sbjct 425 AC 426 Score = 67.6 bits (36), Expect = 2e-10 Identities = 36/36 (100%), Gaps = 0/36 (0%) Strand=Plus/Plus Query 603 CAAGAAAGGAGATGATTCGTGGTGGAACTGGAATAA 638 |||||||||||||||||||||||||||||||||||| Sbjct 477 CAAGAAAGGAGATGATTCGTGGTGGAACTGGAATAA 512 > Ahg480113 jgi|Araly1|480113|fgenesh2_kg.3__2814__AT2G04840.1 Length=1197 Score = 182 bits (98), Expect = 7e-45 Identities = 416/561 (74%), Gaps = 55/561 (10%) Strand=Plus/Plus Query 525 AGCTGTTCTGTGGATAGACGAGAGAACAGGAGATTTTGTGGTTGCTTGGATTTTTA-ACT 583 ||||||||| |||||| |||||| |||||| |||| ||| |||||||||| || | || Sbjct 504 AGCTGTTCTATGGATAAACGAGACAACAGGGGATTATGTCGTTGCTTGGACATTCATAC- 562 Query 584 ATCGTTACTTGTTCTCATACAAGAAAGGAGATGATTCGTGGTGGAA-CTGGAATAACCAT 642 | | |||||||||||||||||||||||||||| ||| ||||| || || ||| || || Sbjct 563 AGCATTACTTGTTCTCATACAAGAAAGGAGATTCTTCTTGGTGTAATCTA-AATCACAAT 621 Query 643 TGGAATATGGAAAGCTTGAATTTAAGTTTTTTGGATTTGGCTTAC-AGAAACAGCAAGCT 701 |||| | || ||| ||| |||| | || |||||| |||| || ||||| Sbjct 622 GGGAAAA-GG-----TTGG-TTTC-GTTT---G-ATATGGCTTGTGAGAA-CAATAAGCT 668 Query 702 TTATATCTACATTA-CTAAG-AGTCACATCAAAG-TTGTTGATTTCTCTGGAAATGATCC 758 |||| | ||| | |||| | |||||| || | || |||||||||||||| | ||| Sbjct 669 TTATCTTTACGC-AGCTAATCA-TCACAT-AAGGATTTTTGATTTCTCTGGAGTTTTTCC 725 Query 759 CATAGAA--GTAATC-GATAAAAACCCGTATTGGGAACATCCGTTT--CGATACTTAACC 813 ||||||| | || | || ||| |||||||| | || |||||||| || || | Sbjct 726 CATAGAAAAGAAAACCGA-AAA--CCCGTATTCGAAATATCCGTTTAACGCGG-TTGAGG 781 Query 814 AAAAAAGGGGAATACATTAATAAGAGGAGAATAGCGATTCAGAAATCA---GGAGACGTT 870 || | | ||||| || ||||||| ||||||||||||||||||| || || ||| Sbjct 782 AACCGTGCG-AATACGTTTGGAAGAGGAAAATAGCGATTCAGAAATCATCAGGTGAGGTT 840 Query 871 TTGATTATCTTGAGTGTATTAGCACAAA-GATC----AA-AAGAGAAAGTTTTATTTTAC 924 ||||| |||||||| | | | |||| | | || |||||||| |||| |||||| Sbjct 841 TTGATCATCTTGAGCCT-TAA--ACAAGTGTTTTGTGAAGAAGAGAAACTTTTGTTTTAC 897 Query 925 ATCTTTAAGATGAATCTTGCGAGTAA-AATATGGGAAAGAGTAGAATCTATTGGAGATGA 983 ||||||||||||||||||| |||| || ||||||||||| | |||||||||||||| Sbjct 898 ATCTTTAAGATGAATCTTGAGAGTTGCAAG-TGGGAAAGAGTTTATTCTATTGGAGATGA 956 Query 984 TGAGATGTTGATCTTTGGTCATGGGGTTACGATAAGAGCACCGGT-TCAA-GATGTTGGT 1041 || ||||| | |||||||| || ||||| ||| | || | | | || ||| ||||| Sbjct 957 -GA--TGTTGGTTTTTGGTCAAGGTGTTACAATA-GCT-ACTGCTCTTAAAGATCTTGGT 1011 Query 1042 GATGGAATCAAGAGTGGTTCA 1062 ||||||||||||||| |||| Sbjct 1012 CATGGAATCAAGAGTGATTCA 1032 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45595008732 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5