BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G38410.3 Length=999 Score E Sequences producing significant alignments: (Bits) Value Ahg494137 jgi|Araly1|494137|fgenesh2_kg.7__3570__AT5G38410.1 1147 0.0 Ahg494136 jgi|Araly1|494136|fgenesh2_kg.7__3569__AT5G38430.1 817 0.0 Ahg475805 jgi|Araly1|475805|fgenesh2_kg.2__935__AT1G67090.1 664 0.0 > Ahg494137 jgi|Araly1|494137|fgenesh2_kg.7__3570__AT5G38410.1 Length=787 Score = 1147 bits (621), Expect = 0.0 Identities = 749/807 (93%), Gaps = 24/807 (3%) Strand=Plus/Plus Query 20 GGTTCTCATTATATAAAGATGA-CAACACCAGTAGGA-AAACAAGTCAGTAAGT-AAACG 76 |||||||| ||||||||||||| ||| |||| || || |||||||| ||||||| ||| | Sbjct 1 GGTTCTCACTATATAAAGATGACCAA-ACCAATA-GACAAACAAGTAAGTAAGTGAAAAG 58 Query 77 AGCAAAAGAAGAAGAGAAACAACAAGAAGTAGTAATGGCTTCCTCTATGCTCTCCTCCGC 136 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 59 AGCAAAAGAAGAAGAGAAACAACAAGAAGAAGTAATGGCTTCCTCTATGCTCTCCTCGGC 118 Query 137 CGCTGTGGTTACATCCCCGGCTCAGGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTC 196 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 119 CGCTGTGGTTACCTCCCCGGCTCAAGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTC 178 Query 197 ATCCGCTGCATTCCCGGTCACCCGCAAGACCAACAAGGACATCACTTCCATCGCAAGCAA 256 ||||||||| |||||||||||||||||| ||||||| ||||| ||||||||||||||||| Sbjct 179 ATCCGCTGCTTTCCCGGTCACCCGCAAGGCCAACAACGACATTACTTCCATCGCAAGCAA 238 Query 257 CGGGGGAAGAGTTAGCTGCATGAAGGTGTGGCCACCAATTGGAAAGAAGAAGTTTGAGAC 316 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 239 CGGGGGAAGAGTTAGCTGCATGAAGGTGTGGCCACCAATCGGAAAGAAGAAGTTTGAGAC 298 Query 317 TCTATCTTACCTCCCTGACCTTAGTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCT 376 | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 299 TTTATCTTACCTCCCTGACCTTACTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCT 358 Query 377 CCGCAACAAGTGGATTCCTTGTGTTGAATTCGAGTTAGAGGTAATAAACACAAAACACGG 436 |||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 359 CCGCAACAAGTGGATTCCTTGTGTTGAATTCGAGTTAGAG--------CAC-------GG 403 Query 437 ATTTGTGTACCGTGAGCACGGAAACACTCCCGGATACTACGATGGACGGTACTGGACAAT 496 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 404 ATTTGTGTACCGTGAACACGGAAACACTCCCGGATACTACGATGGACGGTACTGGACAAT 463 Query 497 GTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGCTCAAGTGTTGAAGGAAGTTG-AAG 555 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 464 GTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGCTCAAGTGTTGAAGGAAGT-GCAAG 522 Query 556 AATGCAAGAAGGAGTACCCGGGCGCCTTCATTAGGATCATCGGATTCGACAACACCCGTC 615 ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 523 AATGCAAGAAGGAGTACCCTAATGCCTTCATTAGGATCATCGGATTCGACAACAACCGTC 582 Query 616 AAGTCCAATGCATCAGTTTCATTGCCTACAAGCCCCCAAGCTTCACCGAAGCTTAATTTC 675 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| | Sbjct 583 AAGTCCAATGCATCAGTTTCATCGCCTACAAGCCCCCAAGCTTCACCGATGCTTAATTCC 642 Query 676 TTTTCTAAAACATTCTTATGAATTATCTCTGCTCATTTCATTTCCTATTGTCTGTGTTCT 735 |||||||||||||| ||| |||||||||| ||||||||||| ||||||||||||||| | Sbjct 643 CTTTCTAAAACATTCATATAAATTATCTCTACTCATTTCATT-CCTATTGTCTGTGTTGT 701 Query 736 TTTTCTCTTTATGAGACAATTTCTATCGGATTGTCAAATGTCTGATTTATGAATATGTAA 795 ||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 702 TTT-CTCTTTATGAGACATTTTATATCGGATTGTCAAATGTCTGATTTATGAATATGTAT 760 Query 796 TTTATATATCCGTGCGTCTTGATTTTT 822 ||||||||| | ||||||||||||||| Sbjct 761 TTTATATATTCTTGCGTCTTGATTTTT 787 > Ahg494136 jgi|Araly1|494136|fgenesh2_kg.7__3569__AT5G38430.1 Length=596 Score = 817 bits (442), Expect = 0.0 Identities = 541/586 (92%), Gaps = 17/586 (3%) Strand=Plus/Plus Query 97 AACAAGAAGTAGTAATGGCTTCCTCTATGCTCTCCTCCGCCGCTGTGGTTACATCCCCGG 156 ||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||| | Sbjct 4 AACAAGACGTAGTGATGGCTTCCTCTATGCTCTCCTCTGCCGCTGTGGTTACCTCCCCAG 63 Query 157 CTCAGGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTCATCCGCTGCATTCCCGGTCA 216 |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 64 CTCAAGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTCATCCGCTGCTTTCCCCGTCA 123 Query 217 CCCGCAAGACCAACAAGGACATCACTTCCATCGCAAGCAACGGGGGAAGAGTTAGCTGCA 276 |||||||| | ||||| ||||| ||||| ||| ||||||| || |||||||||||||||| Sbjct 124 CCCGCAAGGCTAACAACGACATTACTTCTATCTCAAGCAATGGCGGAAGAGTTAGCTGCA 183 Query 277 TGAAGGTGTGGCCACCAATTGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACC 336 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 184 TGAAGGTGTGGCCACCAATTGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACC 243 Query 337 TTAGTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTT 396 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 244 TTACTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTT 303 Query 397 GTGTTGAATTCGAGTTAGAGGTAATAAACACAAAACACGGATTTGTGTACCGTGAGCACG 456 |||||||||||||||||||| | | |||||||||||||||||||||| Sbjct 304 GTGTTGAATTCGAGTTAGAGC-A-T-------------GGATTTGTGTACCGTGAGCACG 348 Query 457 GAAACACTCCCGGATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCG 516 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 349 GAAACACTCCCGGATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCG 408 Query 517 GATGCACCGACTCCGCTCAAGTGTTGAAGGAAGTTG-AAGAATGCAAGAAGGAGTACCCG 575 |||||||||| || |||||||||||||||||||| | |||||||||||||||||||||| Sbjct 409 GATGCACCGATTCTGCTCAAGTGTTGAAGGAAGT-GCAAGAATGCAAGAAGGAGTACCCT 467 Query 576 GGCGCCTTCATTAGGATCATCGGATTCGACAACACCCGTCAAGTCCAATGCATCAGTTTC 635 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 468 AATGCCTTCATTAGGATCATCGGATTCGACAACAACCGTCAAGTCCAATGCATCAGTTTC 527 Query 636 ATTGCCTACAAGCCCCCAAGCTTCACCGAAGCTTAATTTCTTTTCT 681 ||||||||||||||||||||||||||||| |||||||| | ||||| Sbjct 528 ATTGCCTACAAGCCCCCAAGCTTCACCGATGCTTAATTCCCTTTCT 573 > Ahg475805 jgi|Araly1|475805|fgenesh2_kg.2__935__AT1G67090.1 Length=993 Score = 664 bits (359), Expect = 0.0 Identities = 510/579 (88%), Gaps = 25/579 (4%) Strand=Plus/Plus Query 100 AAGAAGTAGTAATGGCTTCCTCTATGCTCTCCTCCGCCGCTGTGGTTACATCCCCGGCTC 159 |||||| | ||||||||||||||||||||| ||||| || ||||| | || ||||||| Sbjct 166 AAGAAG-AACAATGGCTTCCTCTATGCTCTCTTCCGCTACTATGGTTGCCTCTCCGGCTC 224 Query 160 AGGCCACCATGGTCGCTCCATTCACCGG-CTTGAAGTCATCCGCTGCATTCCCGGTCACC 218 ||||||| ||||||||||| |||||||| ||| ||||| |||||||| ||||| | |||| Sbjct 225 AGGCCACAATGGTCGCTCCTTTCACCGGACTT-AAGTCCTCCGCTGCCTTCCCAGCCACC 283 Query 219 CGCAAGACCAACAAGGACATCACTTCCATCGCAAGCAACGGGGGAAGAGTTAGCTGCATG 278 |||||| ||||||| ||||| ||||||||| |||||||||| |||||||||| ||||||| Sbjct 284 CGCAAGGCCAACAACGACATTACTTCCATCACAAGCAACGGCGGAAGAGTTAACTGCATG 343 Query 279 AAGGTGTGGCCACCAATTGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACCTT 338 |||| ||||| || |||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 344 CAGGTATGGCCTCCCATTGGAAAGAAGAAGTTTGAGACTCTCTCTTACCTTCCTGACCTT 403 Query 339 AGTGACGT-CGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTTG 397 | || | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 404 ACCGA-TTCCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTTG 462 Query 398 TGTTGAATTCGAGTTAGAGGTAATAAACACAAAACACGGATTTGTGTACCGTGAGCACGG 457 ||||||||||||||| ||| ||| ||||||||||||||||||||||| Sbjct 463 TGTTGAATTCGAGTTGGAG--------CAC-------GGATTTGTGTACCGTGAGCACGG 507 Query 458 AAACACTCCCGGATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGG 517 ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 508 TAACACCCCCGGATACTATGATGGACGGTACTGGACAATGTGGAAGCTTCCCTTGTTCGG 567 Query 518 ATGCACCGACTCCGCTCAAGTGTTGAAGGAAGTTG-AAGAATGCAAGAAGGAGTACCCGG 576 |||||||||||||||||||||||||||||||| | |||| ||||||||||||||||| Sbjct 568 TTGCACCGACTCCGCTCAAGTGTTGAAGGAAGT-GCAAGAGTGCAAGAAGGAGTACCCTC 626 Query 577 GCGCCTTCATTAGGATCATCGGATTCGACAACACCCGTCAAGTCCAATGCATCAGTTTCA 636 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 627 AAGCCTTCATTAGGATCATCGGATTCGACAACACCCGTCAAGTGCAGTGCATCAGTTTCA 686 Query 637 TTGCCTACAAGCCCCCAAGCTTCACCGAAGCTTAATTTC 675 ||||||||||||| ||||||||||||| | |||||||| Sbjct 687 TTGCCTACAAGCCACCAAGCTTCACCG--G-TTAATTTC 722 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37131721158 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5