BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G38430.1 Length=808 Score E Sequences producing significant alignments: (Bits) Value Ahg494137 jgi|Araly1|494137|fgenesh2_kg.7__3570__AT5G38410.1 933 0.0 Ahg494136 jgi|Araly1|494136|fgenesh2_kg.7__3569__AT5G38430.1 913 0.0 Ahg475805 jgi|Araly1|475805|fgenesh2_kg.2__935__AT1G67090.1 726 0.0 > Ahg494137 jgi|Araly1|494137|fgenesh2_kg.7__3570__AT5G38410.1 Length=787 Score = 933 bits (505), Expect = 0.0 Identities = 554/578 (96%), Gaps = 2/578 (0%) Strand=Plus/Plus Query 19 aagaagaagTAATGGCTTCCTCTATGCTCTCCTCTGCCGCTGTGGTTACCTCCCCGGCTC 78 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 82 AAGAAGAAGTAATGGCTTCCTCTATGCTCTCCTCGGCCGCTGTGGTTACCTCCCCGGCTC 141 Query 79 AAGCCACCATGGTCGCTCCATTCACTGGTTTGAAGTCATCCGCTTCTTTCCCGGTCACCC 138 ||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||| Sbjct 142 AAGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTCATCCGCTGCTTTCCCGGTCACCC 201 Query 139 GCAAGGCCAACAACGACATTACTTCCATCACAAGCAATGGGGGAAGAGTTAGCTGCATGA 198 ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| Sbjct 202 GCAAGGCCAACAACGACATTACTTCCATCGCAAGCAACGGGGGAAGAGTTAGCTGCATGA 261 Query 199 AGGTGTGGCCACCAATCGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACCTTA 258 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 262 AGGTGTGGCCACCAATCGGAAAGAAGAAGTTTGAGACTTTATCTTACCTCCCTGACCTTA 321 Query 259 CTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAATGGATTCCTTGTG 318 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 322 CTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTTGTG 381 Query 319 TTGAATTCGAGTTGGAGCACGGATTTGTGTACCGTGAGCACGGAAACACTCCCGGATACT 378 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 382 TTGAATTCGAGTTAGAGCACGGATTTGTGTACCGTGAACACGGAAACACTCCCGGATACT 441 Query 379 ACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGCTC 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 442 ACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGCTC 501 Query 439 AAGTGTTGAAGGAAGTTG-AAGAATGCAAGAAGGAGTACCCGGGCGCCTTCATTAGGATC 497 |||||||||||||||| | |||||||||||||||||||||| ||||||||||||||| Sbjct 502 AAGTGTTGAAGGAAGT-GCAAGAATGCAAGAAGGAGTACCCTAATGCCTTCATTAGGATC 560 Query 498 ATCGGATTCGACAACACCCGTCAAGTCCAATGCATCAGTTTCATTGCCTACAAGCCCCCA 557 |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 561 ATCGGATTCGACAACAACCGTCAAGTCCAATGCATCAGTTTCATCGCCTACAAGCCCCCA 620 Query 558 AGCTTCACTGATGCTTAAATCCTTTTCTGGAATATTCA 595 |||||||| ||||||||| ||| ||||| || ||||| Sbjct 621 AGCTTCACCGATGCTTAATTCCCTTTCTAAAACATTCA 658 > Ahg494136 jgi|Araly1|494136|fgenesh2_kg.7__3569__AT5G38430.1 Length=596 Score = 913 bits (494), Expect = 0.0 Identities = 561/594 (94%), Gaps = 2/594 (0%) Strand=Plus/Plus Query 13 aagaagaagaagaagTAATGGCTTCCTCTATGCTCTCCTCTGCCGCTGTGGTTACCTCCC 72 ||||| |||| | ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAGAACAAGACGTAGTGATGGCTTCCTCTATGCTCTCCTCTGCCGCTGTGGTTACCTCCC 60 Query 73 CGGCTCAAGCCACCATGGTCGCTCCATTCACTGGTTTGAAGTCATCCGCTTCTTTCCCGG 132 | ||||||||||||||||||||||||||||| || ||||||||||||||| ||||||| | Sbjct 61 CAGCTCAAGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTCATCCGCTGCTTTCCCCG 120 Query 133 TCACCCGCAAGGCCAACAACGACATTACTTCCATCACAAGCAATGGGGGAAGAGTTAGCT 192 ||||||||||||| ||||||||||||||||| ||| |||||||||| ||||||||||||| Sbjct 121 TCACCCGCAAGGCTAACAACGACATTACTTCTATCTCAAGCAATGGCGGAAGAGTTAGCT 180 Query 193 GCATGAAGGTGTGGCCACCAATCGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTG 252 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 181 GCATGAAGGTGTGGCCACCAATTGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTG 240 Query 253 ACCTTACTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAATGGATTC 312 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 241 ACCTTACTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTC 300 Query 313 CTTGTGTTGAATTCGAGTTGGAGCACGGATTTGTGTACCGTGAGCACGGAAACACTCCCG 372 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 301 CTTGTGTTGAATTCGAGTTAGAGCATGGATTTGTGTACCGTGAGCACGGAAACACTCCCG 360 Query 373 GATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACT 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 361 GATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGATT 420 Query 433 CCGCTCAAGTGTTGAAGGAAGTTG-AAGAATGCAAGAAGGAGTACCCGGGCGCCTTCATT 491 | |||||||||||||||||||| | |||||||||||||||||||||| ||||||||| Sbjct 421 CTGCTCAAGTGTTGAAGGAAGT-GCAAGAATGCAAGAAGGAGTACCCTAATGCCTTCATT 479 Query 492 AGGATCATCGGATTCGACAACACCCGTCAAGTCCAATGCATCAGTTTCATTGCCTACAAG 551 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 480 AGGATCATCGGATTCGACAACAACCGTCAAGTCCAATGCATCAGTTTCATTGCCTACAAG 539 Query 552 CCCCCAAGCTTCACTGATGCTTAAATCCTTTTCTGGAATATTCAATGTTGACTA 605 |||||||||||||| ||||||||| ||| ||||| |||| |||| |||||||| Sbjct 540 CCCCCAAGCTTCACCGATGCTTAATTCCCTTTCTTGAATGTTCAGCGTTGACTA 593 > Ahg475805 jgi|Araly1|475805|fgenesh2_kg.2__935__AT1G67090.1 Length=993 Score = 726 bits (393), Expect = 0.0 Identities = 499/550 (91%), Gaps = 7/550 (1%) Strand=Plus/Plus Query 19 aagaagaagTAATGGCTTCCTCTATGCTCTCCTCTGCCGCTGTGGTTACCTCCCCGGCTC 78 |||||||| ||||||||||||||||||||| || || || ||||| |||| ||||||| Sbjct 166 AAGAAGAA-CAATGGCTTCCTCTATGCTCTCTTCCGCTACTATGGTTGCCTCTCCGGCTC 224 Query 79 AAGCCACCATGGTCGCTCCATTCACTGG-TTTGAAGTCATCCGCTTCTTTCCCGGTCACC 137 | ||||| ||||||||||| ||||| || || ||||| |||||| | ||||| | |||| Sbjct 225 AGGCCACAATGGTCGCTCCTTTCACCGGACTT-AAGTCCTCCGCTGCCTTCCCAGCCACC 283 Query 138 CGCAAGGCCAACAACGACATTACTTCCATCACAAGCAATGGGGGAAGAGTTAGCTGCATG 197 |||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||| Sbjct 284 CGCAAGGCCAACAACGACATTACTTCCATCACAAGCAACGGCGGAAGAGTTAACTGCATG 343 Query 198 AAGGTGTGGCCACCAATCGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACCTT 257 |||| ||||| || || ||||||||||||||||||||||| |||||||| ||||||||| Sbjct 344 CAGGTATGGCCTCCCATTGGAAAGAAGAAGTTTGAGACTCTCTCTTACCTTCCTGACCTT 403 Query 258 ACTGACGT-CGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAATGGATTCCTTG 316 || || | ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 404 ACCGA-TTCCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTTG 462 Query 317 TGTTGAATTCGAGTTGGAGCACGGATTTGTGTACCGTGAGCACGGAAACACTCCCGGATA 376 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 463 TGTTGAATTCGAGTTGGAGCACGGATTTGTGTACCGTGAGCACGGTAACACCCCCGGATA 522 Query 377 CTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGC 436 ||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 523 CTATGATGGACGGTACTGGACAATGTGGAAGCTTCCCTTGTTCGGTTGCACCGACTCCGC 582 Query 437 TCAAGTGTTGAAGGAAGTTG-AAGAATGCAAGAAGGAGTACCCGGGCGCCTTCATTAGGA 495 |||||||||||||||||| | |||| ||||||||||||||||| ||||||||||||| Sbjct 583 TCAAGTGTTGAAGGAAGT-GCAAGAGTGCAAGAAGGAGTACCCTCAAGCCTTCATTAGGA 641 Query 496 TCATCGGATTCGACAACACCCGTCAAGTCCAATGCATCAGTTTCATTGCCTACAAGCCCC 555 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | Sbjct 642 TCATCGGATTCGACAACACCCGTCAAGTGCAGTGCATCAGTTTCATTGCCTACAAGCCAC 701 Query 556 CAAGCTTCAC 565 |||||||||| Sbjct 702 CAAGCTTCAC 711 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29850244011 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5