BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38480.1
Length=1141
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494127 jgi|Araly1|494127|fgenesh2_kg.7__3560__AT5G38480.1 1559 0.0
Ahg477486 jgi|Araly1|477486|fgenesh2_kg.3__187__AT3G02520.1 586 1e-166
Ahg922661 jgi|Araly1|922661|scaffold_103942.1 388 4e-107
Ahg942561 jgi|Araly1|942561|scaffold_603105.1 381 6e-105
> Ahg494127 jgi|Araly1|494127|fgenesh2_kg.7__3560__AT5G38480.1
Length=1063
Score = 1559 bits (844), Expect = 0.0
Identities = 972/1030 (94%), Gaps = 23/1030 (2%)
Strand=Plus/Plus
Query 40 TCTCTTCTTATTCCATTTTTTCAAACCACTTGCAAAATTCGAATCAGATCTTCTCTTC-- 97
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1 TCTCTTCTTATTCCATTTTTTCAAACCACTTGC-AAATTCGAATCAGATCTTC-AAACGA 58
Query 98 AATCGaaaaaaaaGAAAGGATTTGCTCTAGATTGTT-GAATCGAAGATGT---C----G- 148
|| ||||||| | |||||||||||||||||||||| |||||||||||| | |
Sbjct 59 AAAAGAAAAAAGA-AAAGGATTTGCTCTAGATTGTTAAAATCGAAGATGTCGACTGAAGC 117
Query 149 A-CAAGGGAAGAGAATGTTTACATGGCGAAATTAGCCGAACAAGCTGAACGTTACGAAGA 207
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 118 ATCAAGGGAAGAGAATGTTTACATGGCGAAATTAGCCGAACAAGCTGAACGTTATGAAGA 177
Query 208 AATGGTTGAATTCATGGAGAAAGTTGCGAAAACTGTTGATGTTGAGGAACTTTCAGTTGA 267
||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 178 AATGGTTGAATTCATGGAGAAAGTTGCGAAAACTGTTGATGTTGAAGAACTCTCTGTTGA 237
Query 268 AGAGAGGAATCTTCTCTCTGTTGCTTACAAGAACGTGATTGGAGCGAGAAGAGCTTCGTG 327
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AGAGAGGAACCTTCTCTCTGTTGCTTACAAGAACGTGATTGGAGCGAGAAGAGCTTCGTG 297
Query 328 GAGAATCATTTCTTCGATTGAGCAGAAAGAAGAGAGCAAAGGGAACGAAGATCATGTTGC 387
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 298 GAGAATCATTTCTTCGATTGAGCAGAAAGAAGAGAGCAAAGGGAACGAGGATCATGTTGC 357
Query 388 TATTATCAAGGATTACAGAGGAAAGATTGAATCCGAGCTTAGCAAAATCTGTGATGGGAT 447
|||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct 358 TATTATCAAGGATTACAGGGGAAAGATCGAAACCGAGCTTAGCAAAATCTGTGATGGGAT 417
Query 448 TTTGAATGTTCTTGAAGCTCATCTTATTCCTTCTGCTTCACCAGCTGAATCTAAAGTGTT 507
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 418 TTTGAATGTTCTTGAAGCTCATCTTATTCCATCTGCTTCACCTGCTGAATCTAAAGTGTT 477
Query 508 TTATCTTAAGATGAAGGGTGATTATCATAGGTATCTTGCTGAGTTTAAGGCTGGTGCTGA 567
||| || || |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 478 TTACCTAAAAATGAAGGGAGATTATCATAGGTATCTTGCCGAGTTTAAGGCTGGTGCTGA 537
Query 568 AAGGAAAGAAGCTGCTGAAAGCACTTTGGTTGCTTACAAGTCTGCTTCCGACATTGCCAC 627
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GAGGAAAGAAGCTGCTGAAAGCACTTTGGTTGCTTACAAGTCTGCTTCCGACATTGCCAC 597
Query 628 TGCTGAGTTAGCTCCTACTCACCCGATAAGGCTTGGTCTTGCACTCAACTTCTCTGTGTT 687
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 598 TGCTGAGTTAGCTCCCACTCACCCGATAAGGCTTGGTCTTGCCCTCAACTTCTCTGTGTT 657
Query 688 TTACTATGAAATCCTCAACTCGCCTGATCGTGCTTGCAGCCTCGCAAAGCAGGCGTTTGA 747
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 658 TTACTATGAAATCCTCAACTCGCCTGATCGTGCTTGCAGCCTCGCAAAGCAGGCATTTGA 717
Query 748 TGATGCAATCGCTGAGTTAGATACATTGGGTGAGGAATCATACAAGGACAGTACACTGAT 807
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TGATGCTATCGCTGAGTTGGATACATTGGGTGAGGAATCATACAAGGACAGTACACTGAT 777
Query 808 TATGCAGCTTCTTAGAGACAATCTCACTCTCTGGACTTCAGATATGACTGACGAAGCAGG 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TATGCAGCTTCTTAGAGACAATCTCACTCTCTGGACTTCAGATATGACTGACGAAGCAGG 837
Query 868 AGATGAGATTAAGGAGGCATCAAAGCCCGATGGTGCCGAGTAAACCCGAAGAAGAGGAAG 927
||||||||| ||||||||||| |||||||| |||||||||| |||| ||||||||||||
Sbjct 838 AGATGAGATCAAGGAGGCATCGAAGCCCGAAGGTGCCGAGTGAACCTGAAGAAGAGGAA- 896
Query 928 AGTCATTTTATAATGGTAGAAAACTTTCATGTGATAATCTGAGTGAGGGATAGCTCAGGA 987
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 897 A-TCATTTTATAATGGTAGAAA-CTTTCATGTGATAATCTGAGTGAGGGATAGCTCAGGA 954
Query 988 TTCTTATAAGAGACACAGTTTTATTGTTGTTTGTTTGTTTTGAAA--CTACTTGCGATTT 1045
|||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 955 TTCTTATAAG-GACACAGTTTTATTGTTGTTTGTTTGTTTGGAAAAACTACTTGCGATTT 1013
Query 1046 ATCATT-CCT 1054
|| ||| |||
Sbjct 1014 AT-ATTTCCT 1022
> Ahg477486 jgi|Araly1|477486|fgenesh2_kg.3__187__AT3G02520.1
Length=1145
Score = 586 bits (317), Expect = 1e-166
Identities = 605/746 (81%), Gaps = 11/746 (1%)
Strand=Plus/Plus
Query 153 GGGAAGAGAATGTTTACATGGCGAAATTAGCCGAACAAGCTGAACGTTACGAAGAAATGG 212
||||||||||||| ||| | || || ||||| || |||||||||||||| || |||||||
Sbjct 95 GGGAAGAGAATGTGTACTTAGCCAAGTTAGCTGAGCAAGCTGAACGTTATGAGGAAATGG 154
Query 213 TTGAATTCATGGAGAAAGTTGCGAAAACTGTTGATGTTGAGGAACTTTCAGTTGAAGAGA 272
||||||||||||||||||||||||| |||||||| || || ||| | || ||||||
Sbjct 155 TTGAATTCATGGAGAAAGTTGCGAAGACTGTTGACACCGATGAGCTTACTGTCGAAGAGC 214
Query 273 GGAATCTTCTC-TCTGTTGCTTACAAGAACGTGATTGGAGCGAGAAGAGCTTCGTGGAGA 331
| || || || |||||||| ||||||||||| ||||| || || |||||||| |||||
Sbjct 215 GAAACCT-CTTGTCTGTTGCGTACAAGAACGTCATTGGTGCTAGGAGAGCTTCCTGGAGG 273
Query 332 ATCATTTCTTCGATTGAGCAGAAAGAAGAGAGCAAAGGGAACGAAGATCATGTTGCTATT 391
||||| ||||| ||||| ||||| ||||| |||| ||| ||||| ||||||||| | |||
Sbjct 274 ATCATATCTTCCATTGAACAGAAGGAAGAAAGCAGAGGAAACGATGATCATGTTTCCATT 333
Query 392 ATCAAGGATTACAGAGGAAAGATTGAATCCGAGCTTAGCAAAATCTGTGATGGGATTTTG 451
|||||||| |||||||| ||||| ||| |||| || ||||||||||||||||| || |
Sbjct 334 ATCAAGGACTACAGAGGGAAGATCGAAACCGAACTCAGCAAAATCTGTGATGGAATACTC 393
Query 452 AATGTTCTTGAAGCTCATCTTATTCCTTCTGCTTCACCAGCTGAATCTAAAGTGTTTTAT 511
||| |||| || |||| ||| |||| |||| || ||||| || ||||| |||||
Sbjct 394 AATCTTCTGGATTCTCACCTTGTTCCCACTGCATCTTTGGCTGAGTCCAAAGTCTTTTAC 453
Query 512 CTTAAGATGAAGGGTGATTATCATAGGTATCTTGCTGAGTTTAAGGCTGGTGCTGAAAGG 571
|| || ||||| || ||||| || ||||| ||||||||||||||| |||||||||| |||
Sbjct 454 CTCAAAATGAAAGGAGATTACCACAGGTACCTTGCTGAGTTTAAGACTGGTGCTGAGAGG 513
Query 572 AAAGAAGCTGCTGAAAGCACTTTGGTTGCTTACAAGTCTGCTTCCG-ACATTGCCACT-G 629
|| ||| |||| || |||||| |||||||||||||||| ||| | | | ||||| ||| |
Sbjct 514 AAGGAATCTGCAGAGAGCACTCTGGTTGCTTACAAGTCAGCT-CAGGATATTGC-ACTTG 571
Query 630 CTGAGTTAGCTCCTACTCACCCGATAAGGCTTGGT-CTTGCACTCAACTTCTCTGTGTTT 688
|||| |||||||||||||||||||| || |||| ||||| || ||||||||||| ||
Sbjct 572 CTGATTTAGCTCCTACTCACCCGATTAGA-TTGGGACTTGCTCTTAACTTCTCTGTCTTC 630
Query 689 TACTATGAAATCCTCAACTCGCCTGATCGTGCTTGCAGCCTCGCAAAGCAGGCGTTTGAT 748
||||| || || |||||||| ||||||||||| ||||| |||||||| ||||| ||||||
Sbjct 631 TACTACGAGATTCTCAACTCACCTGATCGTGCCTGCAGTCTCGCAAAACAGGCTTTTGAT 690
Query 749 GATGCAATCGCTGAGTTAGATACATTGGGTGAGGAATCATACAAGGACAGTACACTGATT 808
|| || || ||||| | || ||||| || || ||||||||||| ||||||||||||||
Sbjct 691 GAGGCTATTTCTGAGCTCGACACATTAGGAGAAGAATCATACAAAGACAGTACACTGATA 750
Query 809 ATGCAGCTTCTTAGAGACAATCTCACTCTCTGGACTTCAGATATGACTGACGAAGCAGGA 868
||||| ||||| | |||||||| || || |||| ||| || || | ||| || || ||
Sbjct 751 ATGCAACTTCTCCGTGACAATCTGACCCTATGGAATTCTGACATCAATGATGAGGCGGGT 810
Query 869 G---ATGAGATTAAGGAGGCATCAAA 891
| ||||||| |||||||| |||||
Sbjct 811 GGTGATGAGATCAAGGAGGCGTCAAA 836
> Ahg922661 jgi|Araly1|922661|scaffold_103942.1
Length=845
Score = 388 bits (210), Expect = 4e-107
Identities = 560/724 (77%), Gaps = 44/724 (6%)
Strand=Plus/Plus
Query 152 AGGGAAGAGAAT-GTTTACATGGCGAAATTAGCCGAACAAGCTGAACGTTACGAAGAAAT 210
||||||||| | |||||| | || ||| | || |||||||| |||||||||||||||||
Sbjct 52 AGGGAAGAG-TTCGTTTACCTCGCAAAACTCGCTGAACAAGCGGAACGTTACGAAGAAAT 110
Query 211 GGTTGAATTCATGGAGAAAGTTGC-GAAAACTGTTGATGTTGAGGAACTTTCAGTTGAAG 269
||||||||||||||| ||||| || ||| | || || || ||||| | || ||||
Sbjct 111 GGTTGAATTCATGGAAAAAGTCGCTGAAGCC-GTCGACAAAGACGAACTCACCGTCGAAG 169
Query 270 AGAGG-AATCTTCTCTCTGTTGCTTACAAGAACGTGATTGGAGCGAGAAGAGCTTCGTGG 328
| | | ||||| ||||| || |||||||| ||||| || || || | | ||||| |||
Sbjct 170 A-ACGTAATCTCCTCTCCGTCGCTTACAAAAACGTCATCGGCGCTCGTCGTGCTTCCTGG 228
Query 329 AGAATCATTTCTTCGATTGAGCAGAAAG-AAGAGAG-CAAAGGGAACGAAGATCATGTTG 386
|||||||| ||||| ||||| || |||| ||||||| | || ||||| || |||||
Sbjct 229 AGAATCATCTCTTCCATTGAACA-AAAGGAAGAGAGTCGT-GGTAACGATGACCATGTAA 286
Query 387 CTATTATCAAG-GATTACAGAGGAAAGATTGAATCCGAGCTTAGC-AAAATCTGTGATGG 444
| | ||| | ||||||||| | ||||| ||||| ||| ||| | ||||||||||| ||
Sbjct 287 CCACGATCC-GTGATTACAGAAGCAAGATCGAATCTGAG-TTATCGAAAATCTGTGACGG 344
Query 445 GATT-TTGAATG-TTCTTGA-AGCTC-ATCTTATTCC---TTCTGCTTCACCAGCTGAAT 497
||| || || | ||||||| | || | ||| |||| ||||||| | | || |
Sbjct 345 TATTCTT-AA-GCTTCTTGATA-CTAGA-CTTGTTCCAGCTTCTGCTA-ATG-GA-GATT 397
Query 498 CTAAAGTGTTTTATCTTAAGATGAAGGGTGATTATCATAGGTATCTTG-CTGAGTTTAAG 556
| || || ||||| |||||||||||||| ||||||||||||||| ||| |||||||||||
Sbjct 398 CGAAGGTTTTTTACCTTAAGATGAAGGGAGATTATCATAGGTAT-TTGGCTGAGTTTAAG 456
Query 557 GCTGGTGCT-GAAAGGAAAGAAGCTGCTGAA-AGCACTTTGGTTGCTTACAA-GTCTGCT 613
||||| | || |||||||| ||||||||| | ||| | |||||||| | | |||
Sbjct 457 ACTGGT-CAAGAGAGGAAAGATGCTGCTGAACAT-ACTCTCACCGCTTACAAAGCC-GCT 513
Query 614 TCCG-ACATTGCCACTGCTGAGTTAGCTCCTACTCACCCGATAAGGCTTGGTCTTG-CAC 671
| | | ||||| | | |||| || ||||| || || ||||| | |||||| ||| |
Sbjct 514 -CAGGATATTGCTAATTCTGAATTGGCTCCAACGCATCCGATTCGTCTTGGT-TTGGCTT 571
Query 672 TCAACTTCTCTGTGTTTTACTATGAAATCCTCAACTCGCCTGATCGTGCTTGCAGCCTCG 731
| ||||||||||||||||||||||| || || || || ||||| |||||||| | ||||
Sbjct 572 TGAACTTCTCTGTGTTTTACTATGAGATTCTTAATTCTCCTGACCGTGCTTGTAATCTCG 631
Query 732 CAAAGCAGGCGTTTGATGATGCAATCGCTGAGTTAGATACA-TTGGGTGAGGAATCATAC 790
| ||||||||||||||||| || || |||||||| ||||| |||| ||||| ||||||
Sbjct 632 CTAAGCAGGCGTTTGATGAAGCCATTGCTGAGTTGGATACTCTTGGA-GAGGAGTCATAC 690
Query 791 AAGGACAGTACACT-GATTATGCAGCTTCTTAGAGACAATCTCACTCTCTGGACTTCAGA 849
||||| ||||| || ||| |||||||||||| | |||||||| |||||||||||||| ||
Sbjct 691 AAGGATAGTAC-CTTGATCATGCAGCTTCTTCGTGACAATCTTACTCTCTGGACTTCTGA 749
Query 850 TATG 853
|||
Sbjct 750 CATG 753
> Ahg942561 jgi|Araly1|942561|scaffold_603105.1
Length=848
Score = 381 bits (206), Expect = 6e-105
Identities = 563/729 (77%), Gaps = 50/729 (7%)
Strand=Plus/Plus
Query 150 CAAGGGAAGAGAAT-GTTTACATGGCGAAATTAGCCGAACAAGCTGAACGTTACGAAGAA 208
|||| ||||| | | || |||||||||||| | || |||||||| || ||||||||||||
Sbjct 53 CAAGAGAAGA-ATTCGTATACATGGCGAAACTCGCTGAACAAGCAGAGCGTTACGAAGAA 111
Query 209 ATGGTTGAATTCATGGAGAAAGTTGCGAAAA-CTGTTGATGTTGAGGAACTTTCAGTTGA 267
||||||||||||||||| ||||| || |||| ||||||| || ||||| | || ||
Sbjct 112 ATGGTTGAATTCATGGAAAAAGTCGC-AAAAGCTGTTGACAAAGACGAACTCACCGTCGA 170
Query 268 AGAGAGG-AATCTTCTCTCTGTTGCTTACAAGAACGTGATTGGAGCGAGAAGAGCTTCGT 326
||| | | ||||| ||||| || |||||||| ||||| || ||||| | | ||||| |
Sbjct 171 AGA-ACGTAATCTCCTCTCCGTCGCTTACAAAAACGTCATCGGAGCTCGTCGTGCTTCAT 229
Query 327 GGAGAATCATTTCTTCGATTGAGCAGAAAG-AAGAGAGCAAAG-GG-AACGAAGATCATG 383
|||||||||| || ||||| || || |||| ||||| | | || ||||| || || |
Sbjct 230 GGAGAATCATCTCATCGATCGAACA-AAAGGAAGAGT-CTC-GTGGTAACGATGACCACG 286
Query 384 TTGCTATT-ATCAAG-GATTACAGAGG-AAAGATTGAATCCGAGCTTAGCAAA-ATCTGT 439
|| | || ||| | || |||||| | ||| || ||| | |||||| | | ||||||
Sbjct 287 TTTCG-TTGATCC-GTGACTACAGAAGCAAA-ATCGAAACGGAGCTTT-CTGATATCTGT 342
Query 440 GATGGGATT-TTGAATG-TTCTTGA-AGCTCAT-CTTATTCCTTCTGCTTCACCAGCTGA 495
|| || || || || | |||| || | | || || |||| ||||| | | | ||
Sbjct 343 GACGGAATCCTT-AA-GCTTCTCGATA-CG-ATTCTCGTTCCCGCTGCTGCTTCTGGAGA 398
Query 496 ATCTAAAG-TGTTTTATCTT-AAGATGAAGGGTGATTATCATAGGTATCTTG-CTGAGTT 552
|| |||| ||||||| ||| |||||||| |||||||||||||| || |||| |||||||
Sbjct 399 TTC-AAAGGTGTTTTA-CTTGAAGATGAAAGGTGATTATCATAGATA-CTTGGCTGAGTT 455
Query 553 TAAGGCTGGTGCT-GAAAGGAAAGAAGCTGCTGAA-AG-CACTTTGGTTGCTTACAA-GT 608
||| ||||| | || |||||||| ||||||||| | |||| | |||||||| |
Sbjct 456 TAAATCTGGT-CAAGAGAGGAAAGATGCTGCTGAACATACACTCAC-T-GCTTACAAAG- 511
Query 609 CTGCTTCCG-ACATTGCCA-CTGCTGAGTTAGCTCCTACTCACCCGATAAGGCTTGGTCT 666
||||| | | | ||||| | || |||| || ||||| || || ||||| | |||||| |
Sbjct 512 CTGCT-CAGGATATTGCTAACT-CTGAATTGGCTCCAACGCATCCGATTCGTCTTGGT-T 568
Query 667 T-GCACTCAACTTCTCTGTGTTTTACTATGAAATCCTCAACTCGCCTGATCGTGCTTGCA 725
| || | ||||||||||||||||||||||| || ||||| || |||||||||||||| |
Sbjct 569 TAGCGTTGAACTTCTCTGTGTTTTACTATGAGATTCTCAATTCTCCTGATCGTGCTTGTA 628
Query 726 GCCTCGCAAAGCAGGCGTTTGATGATGCAATCGCTGAGTTAGATACA-TTGGGTGAGGAA 784
||||| ||||||||||||||||| ||||| ||||| || ||||| |||| ||| ||
Sbjct 629 ATCTCGCTAAGCAGGCGTTTGATGAAGCAATTGCTGAATTGGATACTCTTGG-TGAAGAG 687
Query 785 TCATACAAGGACAGTACACTGATTATGCAGCTTCTTAGAGACAATCTCACTCTCTGGACT 844
||||||||||||||||| ||||||||||||||||| | || || |||||||||||||||
Sbjct 688 TCATACAAGGACAGTACTTTGATTATGCAGCTTCTTCGTGATAACCTCACTCTCTGGACT 747
Query 845 TCAGATATG 853
|| ||||||
Sbjct 748 TCTGATATG 756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42545175372
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5