BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G38510.1 Length=1576 Score E Sequences producing significant alignments: (Bits) Value Ahg494125 jgi|Araly1|494125|fgenesh2_kg.7__3558__AT5G38510.1 2237 0.0 > Ahg494125 jgi|Araly1|494125|fgenesh2_kg.7__3558__AT5G38510.1 Length=1435 Score = 2237 bits (1211), Expect = 0.0 Identities = 1367/1442 (95%), Gaps = 12/1442 (1%) Strand=Plus/Plus Query 44 TAAACGTAATTTTCACAAGTCACTGCTTCG-TTATTCGAACTC-CAATTTTTCCTAATCC 101 ||||||||||||||||||| |||||||||| |||||||||||| ||||| |||||||||| Sbjct 1 TAAACGTAATTTTCACAAGACACTGCTTCGTTTATTCGAACTCGCAATTCTTCCTAATCC 60 Query 102 TCGCAACCACAAATCTTCAATCTTCAAGATTAGGATCAGGTTTCTTCGTTCAAAGGACCT 161 |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 61 TCGCAACCACAAATCTTCAATCTTTAAGATTAGGATCAGG-TTCTTCGTTCAAAGGACCT 119 Query 162 GAAGATGGCACTGTTTCCTCTTCACCATGAAGTCCCTTGTAAAGGAGAAGTATTGTTTGA 221 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 120 GAAGATGGCACTGTTTCCTCTTCACCATGAAGTCCCTTGTAAAGGAGGAGTATTGTTTGA 179 Query 222 TTCAAATGGTTTAAGACGTTTTTCGTCTGGTCTGAAACATAGAACAATGGCTGAAGCAAC 281 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 TTCAAATGGTTTAAGACGTTTTTCGTCTGGTCTGAAACATAGAACAATGGCTGAAGCAAC 239 Query 282 CACGCTTGGCAGGGATTGTAGGATGAA-GAGTTATATGAAA-TCAATCCCGTATTGTCGT 339 |||||| |||||||||||||||||||| || | | | ||| ||||| |||| ||||| | Sbjct 240 CACGCTAGGCAGGGATTGTAGGATGAAGGA-TCGTCT-AAATTCAATACCGTTTTGTCAT 297 Query 340 TCACCAAGAAGAAGGTTATGTTTAGTTAGAGCGTCATCAGAGAACAAGATTACCAAACAG 399 ||||| ||| |||||||||| || ||||| ||||||||||||||||||||||||||| || Sbjct 298 TCACCGAGAGGAAGGTTATGCTTGGTTAGGGCGTCATCAGAGAACAAGATTACCAAAAAG 357 Query 400 AGACTTAAACTGTTGGATTCTTACTTTGGGAAACTTCAAAACGATGATGAGAAGCCTTCT 459 |||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 358 AGACTTAAGCTGTTGGATTCTTACTTTGGGAAACTTCAAAATGACGATGAGAAGCCTTCT 417 Query 460 ATCTCAACAGGAGATGATATTGATCGCAAAGCTGAACTCAATGTGAATGAAGAGTTGGAT 519 |||||||| ||||||||||||||||| |||||||||||||||| | || ||||||||||| Sbjct 418 ATCTCAACGGGAGATGATATTGATCGGAAAGCTGAACTCAATGCGGATAAAGAGTTGGAT 477 Query 520 TCTTTGAGTGCTTATCTTGACAAACTCCAAAAAGATGCAAAATCTAAAGGTTTAGTCTCG 579 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 TCTTTGAGTGTTTATCTTGACAAACTCCAAAAAGATGCAAAATCTAAAGGTTTAGTCTCG 537 Query 580 TCCACCTTGGACGTGGTAAAATCAGAAGGCGGTTCAGTAGCAAGCAAATTGAGAAAGACT 639 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 TCCACCTTGGACGTGGTAAAATCAGAAGGCGGTTCAGTAGCAAGCAAATTGAGAAAGACT 597 Query 640 GGTATTGAAAACAATAATAGTCCTTTCCAGCAGTTTGATGATGAAGATCAAGCAGAAGAT 699 |||||||||| |||||||||||||||||||||| |||||||||| |||||| |||||||| Sbjct 598 GGTATTGAAAGCAATAATAGTCCTTTCCAGCAGCTTGATGATGATGATCAATCAGAAGAT 657 Query 700 ACATTGAACTTCTATGCTGTGAGCATATTAGCATCCATCAATGTTGGTGTCTGCTTGTTT 759 |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| Sbjct 658 ACATTGAACTTCTATGCTGTGAGCATATTAGCATCCATAAATGTCGGTGTGTGCTTGTTT 717 Query 760 GAGGCGGCAGCGCCAGTTAGGAACAACAATATGGGACT-CTTATCACTCCCTTTGTTATA 818 || |||||||||||||||||||| ||| |||||||||| || ||||||||| |||||||| Sbjct 718 GAAGCGGCAGCGCCAGTTAGGAATAACGATATGGGACTGCT-ATCACTCCCGTTGTTATA 776 Query 819 TGGAGCAAAGATAAATGATCTAATCCTTGCTGGAGAATGGTGGAGGCTGGTCACACCCAT 878 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 777 TGGAGCCAAGATAAATGATCTAATCCTGGCTGGAGAATGGTGGAGGCTGGTCACACCCAT 836 Query 879 GTTTCTGCACTCTGGAATTCCTCATGTAGCCCTTAGCTCCTGGGCTCTGCTTACTTTTGG 938 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 837 GTTTCTGCACTCTGGAGTTCCTCATGTAGCCCTTAGCTCCTGGGCTCTGCTTACTTTTGG 896 Query 939 ACCAAAAGTCTGCCGTGACTATGGATTATTCACGTTTTGTCTCATTTACATTCTCGGAGG 998 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 897 ACCAAAAGTCTGCCGTGACTATGGACTATTCACGTTTTGTCTCATTTACATTCTCGGAGG 956 Query 999 AGTCTCTGGAAATTTCATGAGCTTTCTGCATACAGCAGATCCTACAGTTGGAGGAACTGG 1058 ||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 957 AGTCTCTGGTAATTTCATGAGCTTTCTTCATACACCAGATCCTACAGTTGGAGGAACTGG 1016 Query 1059 ACCAGCATTTGCGTTAATAGGAGCTTGGCTCGTTGACCAAAATCAGAACAAAGAGATGAT 1118 |||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 1017 ACCAGCATTTGCATTAATAGGAGCTTGGCTCGTCGACCAAAATCAGAACAAGGAGATGAT 1076 Query 1119 CAAAAGCAACGAATATGAGGACTTGTTTCAGAAGGCCATTATAATGACAGGATTTGGTCT 1178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1077 CAAAAGCAACGAATATGAGGACTTGTTTCAGAAGGCCATTATAATGACAGGATTTGGTCT 1136 Query 1179 CATATTAAGCCATTTCGGTCCAATTGATGACTGGACAAATCTGGGAGCACTTATAGCAGG 1238 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 1137 CATATTAAGCCATTTCGGCCCAATTGATGACTGGACAAATCTGGGAGCACTTATAGCCGG 1196 Query 1239 GATTGTATACGGGTTTTTCACTTGTCCGGTGCTACAACTTGGTAGCGGCGGAAGTGAAAG 1298 |||||||||||| || ||||||||||| ||||| |||||||| || | ||||||||| Sbjct 1197 GATTGTATACGGATTCTTCACTTGTCCAGTGCTCCAACTTGGAAGAGA---AAGTGAAAG 1253 Query 1299 GCAAGAAGGGATTGTGACGGTTGGACCAGAGAAACAAAACAGCGCTGACCCGTGTAAATC 1358 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1254 ACAAGAAGGGATTGTAACGGTAGGACCAGAGAAACAAAACAGCGCTGACCCGTGTAAATC 1313 Query 1359 GTTTCTGCTTTTCACAATCTTCGTCGCGGTTATTGTGACTTCTCTGCTACTGATTGGGGA 1418 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 1314 GTTTCTGCTTTTCACAATCTTTGTCGCGGTTATTGTGACTTCTCTGCTACTTATTGGGGA 1373 Query 1419 CGGTCCATTGGACTTCCCAACGTACGATGATGTTGTGTATTCTCTCATTTAGTGTATCAT 1478 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1374 CGGACCATTGGACTTCCCAACGTACGATGATGTTGTGTATTCTCTCATCTAGTGTATCAT 1433 Query 1479 CA 1480 || Sbjct 1434 CA 1435 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59039879750 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5