BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38520.2
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
Ahg356132 jgi|Araly1|356132|fgenesh1_pg.C_scaffold_7003305 736 0.0
> Ahg356132 jgi|Araly1|356132|fgenesh1_pg.C_scaffold_7003305
Length=1038
Score = 736 bits (398), Expect = 0.0
Identities = 487/530 (92%), Gaps = 6/530 (1%)
Strand=Plus/Plus
Query 33 ATGAGAGCTCTAACATGGACGGCAATGTCGCCGCCG-----G-TGATGTCACGGACGGCG 86
|||||||||||||||||||||| |||||| |||||| | || |||||| || |||
Sbjct 1 ATGAGAGCTCTAACATGGACGGGAATGTCACCGCCGTCAATGATGGTGTCACAAACAGCG 60
Query 87 ACTTCTACGGTTAACTTACGACGTATCAGCCTACGGAGAGATCGCGTCTGTGTTAGAGCC 146
||||||||||||||| ||| |||||||||||| |||||||||| ||||||||||||||||
Sbjct 61 ACTTCTACGGTTAACATACAACGTATCAGCCTCCGGAGAGATCTCGTCTGTGTTAGAGCC 120
Query 147 ACGGCTTCGTCTAGCGCCACGGTTTCCGGCGGAGGAGTAGTAGAGGCGGTAGAATTGGCA 206
|| || ||| | ||| | ||||||| || ||||||||||||||||| |||||| ||| |
Sbjct 121 ACTGCGTCGGCGAGCACGGCGGTTTCAGGTGGAGGAGTAGTAGAGGCAGTAGAACTGGTA 180
Query 207 GAGATAGGAGAAAGAAGCAAGAAATGGAAGTGGAAAGGAGAATATTCTGTTAACTACTTT 266
||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 GAGATAGGAGAGAGAAGTAAGAAATGGAAGTGGAAAGGAGAATATTCTGTTAATTACTTT 240
Query 267 GTCAAAGATTCGCCGGAGGAAGTTACTCCGGCGAGTCAAACTGTTCTTTTGGTTCATGGC 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTCAAAGATTCGCCGGAGGAAGTTACTCCGGCGAGTCAAACTGTTCTTTTGGTTCATGGC 300
Query 327 TTTGGTGCTTCTATTCCTCACTGGCGAAGGAACATAAATGCTTTGTCTAAAAACCATACA 386
||||||||||| |||||||||||| ||||||||||||||||| |||| ||||||||||||
Sbjct 301 TTTGGTGCTTCAATTCCTCACTGGAGAAGGAACATAAATGCTCTGTCCAAAAACCATACA 360
Query 387 GTGTATGCAATTGATCTTCTCGGGTTTGGTGCTTCGGATAAGCCACCTGGTTTTAGCTAT 446
|||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 361 GTGTATGCAATTGATCTTCTTGGATTTGGTGCTTCGGATAAGCCTCCTGGTTTTAGCTAT 420
Query 447 ACCATGGAGTCATGGGCTGAGTTGATACTCAACTTCTTGGAGGAAGTGGTTCAGAAACCG 506
|||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||
Sbjct 421 ACCATGGAGTCATGGGCTGAATTGATAATCAACTTCTTAGAGGAAGTGGTTCAGAAACCG 480
Query 507 ACTATTTTGATTGGAAACTCTGTTGGAAGCCTTGCTTGTGTCATCGCTGC 556
|| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 ACGATTTTGATTGGAAACTCTGTTGGAAGCCTTGCTTGTGTCATTGCTGC 530
Score = 634 bits (343), Expect = 0.0
Identities = 393/418 (94%), Gaps = 0/418 (0%)
Strand=Plus/Plus
Query 595 CAGAATCACGAGGAGATCTGGTCAAAGGTCTTGTTCTATTGAATTGTGCTGGTGGTATGA 654
||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 536 CAGAATCACAACGAGATCTGGTCAAAGGTCTTGTTCTATTGAACTGTGCTGGTGGTATGA 595
Query 655 ACAACAAAGCTGTCTTTGATGACTGGAGAATCAAGCTACTGATGCCTTTACTCTTACTTA 714
|||| ||||| || ||||| |||||| |||||||||| ||||||||||||||||| ||||
Sbjct 596 ACAATAAAGCGGTGTTTGACGACTGGCGAATCAAGCTGCTGATGCCTTTACTCTTGCTTA 655
Query 715 TCGACTTCTTACTCAAGCAAAGAGGAATTGCTTCTGCACTCTTCAACCGTGTTAAAGACA 774
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TCGACTTTTTACTCAAGCAAAGAGGAATTGCTTCTGCACTCTTCAACCGTGTTAAAGACA 715
Query 775 GGGAAAATCTGAAGAACATCTTGACAAATGTTTACGGGAACAAGGACAATGTAGATGACA 834
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 716 GAGAAAATCTCAAGAACATCTTGACAAATGTTTACGGGAACAAGGACAATGTAGATGATA 775
Query 835 CCCTTGTAGAGATCATTGCTGGACCAGCAAATACCGAAGGTGCACTAGATGCTTTTGTTT 894
| |||||||||||||||||||||||||||||| ||||||| || |||||||| |||||||
Sbjct 776 CTCTTGTAGAGATCATTGCTGGACCAGCAAATTCCGAAGGCGCGCTAGATGCATTTGTTT 835
Query 895 CAATCTTAACGGGTCCTCCTGGACCAAATCCGATTAAGCTGATACCGGAAATAACCAAAC 954
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 836 CAATCTTAACGGGTCCACCTGGACCAAACCCGATTAAGCTGATACCGGAAATAACCAAAC 895
Query 955 CGGTTCTTGTCTTATGGGGAGATCAAGATGGACTAACCCCTCTTGATGGTCCAGTAGG 1012
|||||||||| ||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 896 CGGTTCTTGTTTTATGGGGAGACCAAGATGGACTAACCCCTCTCGACGGTCCAGTAGG 953
Score = 147 bits (79), Expect = 3e-34
Identities = 85/88 (97%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 1070 AGGCGTTGGACATTGCCCGCAAGATGATCGTCCGGATCTTGTCCATGAGCGTCTCCTTCC 1129
|||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 951 AGGCGTTGGACATTGCCCACAAGATGATCGCCCGGATCTTGTTCATGAGCGTCTCCTTCC 1010
Query 1130 ATGGCTGGCTCAACTTTCTTCCACCTAG 1157
||||||||||||||||||||||||||||
Sbjct 1011 ATGGCTGGCTCAACTTTCTTCCACCTAG 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50665356693
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5