BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G38530.1 Length=1756 Score E Sequences producing significant alignments: (Bits) Value Ahg494122 jgi|Araly1|494122|fgenesh2_kg.7__3555__AT5G38530.1 2610 0.0 > Ahg494122 jgi|Araly1|494122|fgenesh2_kg.7__3555__AT5G38530.1 Length=1686 Score = 2610 bits (1413), Expect = 0.0 Identities = 1570/1646 (95%), Gaps = 9/1646 (1%) Strand=Plus/Plus Query 48 GATAACAAAGAAATGGCCTCTCAATTGCTTTTACCTCCAAACCAATTCACTAAATCAGTC 107 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 23 GATAACAAAGAAATGGCCTCTCAATTGCTTTTGCCTCCAAACCAATTCACCAAATCAGTC 82 Query 108 TCACCTCAAGTTTTCATT-ACTGGTGATTGTCAAGGATTTAGTGACTTAACTCTGAAAAG 166 ||| || |||||||| || |||||||||| ||||||||||||||||||||| |||| ||| Sbjct 83 TCAGCTAAAGTTTTC-TTCACTGGTGATTATCAAGGATTTAGTGACTTAACCCTGAGAAG 141 Query 167 AAAATCAAACCAAGCTAC-AAGAGTTTC--A-AATGGATCTAGCTTAAGAGTAAAAGCAG 222 |||||| || ||||| || ||| ||||| | ||||||| ||||||||||| |||||||| Sbjct 142 AAAATCTAATCAAGC-ACAAAGGGTTTCAAATAATGGATTTAGCTTAAGAGCAAAAGCAG 200 Query 223 CTTTGAGATCTACTCACAACAAATCAGTGGTTGAGATTCCAAAACAATGGTATAATCTTG 282 ||||||||||||| ||||||||||| ||||||| ||||||||||||||||| ||||||| Sbjct 201 ATTTGAGATCTACTAACAACAAATCATTGGTTGAAATTCCAAAACAATGGTACAATCTTG 260 Query 283 TTGCTGATCTTTCAGTCAAGCCTCCTCCACCGTTGCATCCAAAGACTTTCGAACCGATAA 342 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 261 TTGCTGATCTTTCAGTCAAGCCTCCTCCACCGTTGCATCCAAAGACTTTCCAACCGATAA 320 Query 343 AACCCGAAGATTTGGCTCATCTTTTCCCCAATGAGTTGATTAAACAAGAAGCTACACAAG 402 |||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 321 AACCTGAAGATTTGTCTCATCTTTTCCCCAATGAGTTGATTAAACAAGAAGCAACACAAG 380 Query 403 AGAGGTTTATTGATATCCCTGAGGAAGTTCTTGAAATCTATAAGCTTTGGCGTCCAACTC 462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 381 AGAGGTTTATTGATATCCCTGAGGAAGTTCTTGAAATCTATAAGCTTTGGCGTCCAACTC 440 Query 463 CTCTAATCAGAGCAAAGAGATTAGAGAAGCTTCTTCAAACACCGGCAAGGATTTACTTCA 522 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 441 CTCTAATCAGAGCAAAGAGATTAGAGAAGCTTCTTCAGACACCGGCAAGGATTTACTTCA 500 Query 523 AGTATGAAGGTGGTAGCCCAGCTGGTTCACACAAACCAAACACAGCGGTTCCACAAGCTT 582 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 501 AGTATGAAGGTGGTAGCCCAGCTGGTTCACACAAACCCAACACAGCGGTTCCGCAAGCTT 560 Query 583 ATTACAATGCGAAAGAAGGCGTCAAGAACGTTGTGACGGAAACCGGTGCTGGTCAATGGG 642 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 561 ATTACAATGCGAAAGAAGGCGTCAAGAACGTTGTGACGGAAACCGGTGCTGGCCAATGGG 620 Query 643 GAAGTTCTTTAGCCTTTGCTTCTAGTCTATTTGGTCTCGACTGCGAAGTATGGCAAGTAG 702 | |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 621 GCAGTTCTTTAGCCTTTGCTTCTAGTCTATTTGGCCTTGACTGCGAAGTATGGCAAGTAG 680 Query 703 CCAACTCTTACCATACAAAGCCATATCGCCGGTTAATGATGCAAACTTGGGGTGCAAAGG 762 ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 681 CCAACTCGTACCATACAAAGCCATATCGTCGGTTAATGATGCAAACTTGGGGTGCAAAGG 740 Query 763 TTCATCCGTCGCCATCGGATCTCACTGAGGCGGGTAGAAGAATCCTCGAATCCGATCCAT 822 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 741 TTCATCCATCGCCATCGGATCTCACTGAGGCAGGTAGAAGAATCCTCGAATCCGATCCAT 800 Query 823 CAAGTCCGGGAAGTTTAGGCATTGCGATATCAGAAGCGGTTGAAGTTGCAGCGAGAAACG 882 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 801 CAAGTCCGGGAAGTTTAGGCATTGCGATTTCAGAAGCTGTTGAAGTTGCAGCGAGAAACG 860 Query 883 AGGATACAAAATACTGCCTAGGGAGTGTATTGAACCATGTGTTGTTACACCAAACAATTA 942 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 861 AGGATACAAAATACTGCCTAGGGAGTGTATTGAACCATGTGTTGTTACACCAGACAATTA 920 Query 943 TTGGAGAAGAATGCATTCAACAAATGGAGAATTTTGGTGAAACACCTGACCTGATCATAG 1002 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 921 TTGGAGAAGAATGCATTCAACAAATGGAGAATTTTGGTGAAACACCTGATTTGATCATAG 980 Query 1003 GGTGTACTGGTGGAGGATCAAATTTTGCTGGTTTGAGTTTTCCTTTTATCCGGGAGAAAC 1062 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 981 GGTGTACTGGTGGAGGATCAAATTTTGCTGGTTTGAGTTTTCCTTTTATTCGAGAGAAAC 1040 Query 1063 TCAAAGGCAAA-ATCAACCCTGTTATAAGAGCGGTTGAGCCATCTGCTTGTCCTTCCTTG 1121 ||||||| ||| || |||||||||||||||||||||||||| || ||||||||||||||| Sbjct 1041 TCAAAGG-AAATATAAACCCTGTTATAAGAGCGGTTGAGCCCTCGGCTTGTCCTTCCTTG 1099 Query 1122 ACCAAAGGGGTTTATGCTTATGATTTTGGCGATACGGCTGGATTGACTCCTTTGATGAAG 1181 |||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||| Sbjct 1100 ACCAAAGGGGTTTACGCGTATGATTTTGGCGATACAGCTGGATTGACTCCTTTGATGAAG 1159 Query 1182 ATGCATACTTTGGGACATGACTTCATTCCTGATCCTATCCATGCCGGTGGATTAAGGTAC 1241 ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1160 ATGCATACTTTAGGACATGACTTCATTCCTGATCCTATCCATGCCGGTGGATTACGGTAC 1219 Query 1242 CATGGGATGGCACCATTGATCTCACATGTTTATGAACAAGGATTCATGGAAGCAATTTCA 1301 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1220 CATGGGATGGCACCCTTGATCTCACATGTTTATGAACAAGGATTCATGGAAGCAATTTCA 1279 Query 1302 ATTCCTCAAATTGAGTGTTTCCAAGGTGCTATTCAGTTTGCAAGAACAGAAGGGATCATA 1361 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1280 ATTCCTCAAATCGAGTGTTTCCAAGGTGCTATTCAGTTTGCAAGAACAGAAGGGATAATA 1339 Query 1362 CCCGCACCAGAACCGACCCACGCCATTGCTGCAACCATAAGAGAGGCTCTCCGATGTAAA 1421 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| Sbjct 1340 CCCGCACCAGAACCGACTCACGCCATTGCTGCAACCATAAGAGAAGCTCTCCGATGCAAA 1399 Query 1422 GAGACGGGAGAAGCAAAAGTGATACTAATGGCGATGTGTGGACATGGCCATTTCGACCTT 1481 ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 1400 GAGACAGGAGAAGCAAAAGTGATACTAATGGCTATGTGTGGACATGGCCACTTCGACCTT 1459 Query 1482 ACTTCTTACGACAAGTATTTAAAAGGCGAGTTGGTGGATTTATCATTCAGCGAAGAGAAG 1541 | |||||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 1460 GCCTCTTACGACAAGTATTTAAAAGGCGAGTTGATAGATTTATCATTCAGCGAAGAGAAG 1519 Query 1542 ATACGAGAGTCTTTGTCCAAGGTTCCTCATGTTGTTTAAGCTCGAATGGCCCCATAACCA 1601 ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 1520 ATACGAGAGTCTTTGTCCAAGGTTCCTCATGTTGTTTAAGCTCGAGTGGCTCCATAACCA 1579 Query 1602 CGGGAAACCAATGTCCCATGTTCCAAACTAGACGTGAGACAGAAGTTAGGTTTAATCTTG 1661 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 1580 CGGGAAACCAATGTCCCATGTTCCAAACTAGACGTGTGACAGAAGTTAGGTTTATTCTTG 1639 Query 1662 GCTTTTGAAATGAAGAGTGAGAGAGA 1687 ||||||||||| ||||| ||| |||| Sbjct 1640 GCTTTTGAAATAAAGAGAGAGGGAGA 1665 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65896123850 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5