BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38830.1
Length=1823
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494092 jgi|Araly1|494092|fgenesh2_kg.7__3525__AT5G38830.1 2627 0.0
Ahg898573 jgi|Araly1|898573|Al_scaffold_0005_2539 929 0.0
> Ahg494092 jgi|Araly1|494092|fgenesh2_kg.7__3525__AT5G38830.1
Length=1810
Score = 2627 bits (1422), Expect = 0.0
Identities = 1675/1797 (93%), Gaps = 18/1797 (1%)
Strand=Plus/Plus
Query 28 AAAAAAGGGttttttcgtttttGTTAACTTCGCCGTGTAGTTGTGGTGGTGAGATTGTGA 87
||||||||| |||||||||||||| ||||||||||| | | | ||||||||||||
Sbjct 28 AAAAAAGGG--TTTTCGTTTTTGTTTACTTCGCCGTG-A----AGCT-GTGAGATTGTGA 79
Query 88 GAGATATGGAGGCGGAGAAAATGGAATTGAAGCTCTACAACACGATGACGCAACAGAAAG 147
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 80 GAG--ATGGAGGCGGAGAAAATGGAATTGAAGCTCTACAACACGATGACGCAACAGAAGG 137
Query 148 AAGTTTTGATTCCAATCACTCCTGGCAAAATCGGATTATACGTCTGTGGTATCACCGCTT 207
|||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 138 AAGTGTTGATTCCAATCACTCCCGGCAAAATCGGATTATATGTCTGTGGAATCACCGCTT 197
Query 208 ACGATTTCAGCCATATCGGCCATGCTCGCGCCGCCGTTTCCTTCGATGTTCTTTACAGAT 267
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 198 ACGATTTCAGCCATATCGGCCATGCACGCGCCGCCGTTTCCTTTGATGTTCTTTACAGAT 257
Query 268 ACTTGAAGCATTTGGATTATGATGTTACTTTTGTCCGCAATTTCACTGATGTTGATGACA 327
||||||||||||||| |||||| |||| |||||| || ||||||||||||||||||||||
Sbjct 258 ACTTGAAGCATTTGGGTTATGAAGTTAATTTTGTACGGAATTTCACTGATGTTGATGACA 317
Query 328 AGATTATTGA-TCGTGCTAATAAGAATGGAGAAGACCCGTTAGATTTGAGTAATCGGTTT 386
|||||| | | |||||||||| |||||||||| |||||| |||||||||||||||| |||
Sbjct 318 AGATTA-TCATTCGTGCTAATGAGAATGGAGAGGACCCGCTAGATTTGAGTAATCGCTTT 376
Query 387 TGCGATGAATATTTGGTAGATATGGGTGCTCTGCAGTGCCTCCCTCCCACCCACCAGCCT 446
||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 377 TGCGAGGAATATTTGGTAGATATGGGTGCTCTTCAGTGCCTCCTTCCCACCCACCAGCCT 436
Query 447 CGTGTCAGCGAACATATGGACAACATCATTAAGATGATAGAAAAGATCATTGAGAAAGAT 506
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 437 CGTGTCAGCGAACATATGGACCACATTATTAAGATGATAGAAAAGATCATTGAGAAAGAT 496
Query 507 TGTGGGTATGTAGTGGAAGGGGATGTGTTCTTCTCCGTTGACAAATCACCGAATTATGGG 566
||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 497 TGTGGGTATGTTGTGGAAGGGGATGTATTCTTCTCCGTTGACAAATCGCCAAATTATGGT 556
Query 567 AAATTATCTGGGCAGTTGTTGGAACATACACGAGCTGGTGAGCGTGTTGCTGTTGATTCG 626
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 AAATTATCTGGGCAATTGTTGGAACATACACGAGCTGGTGAGCGTGTTGCTGTTGATTCG 616
Query 627 AGAAAGCGTAACCCTGCTGATTTTGCATTATGGAAGGCGGCAAAGCCTGATGAGCCAAGT 686
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 AGAAAGCGTAACCCCGCTGATTTTGCATTATGGAAGGCGGCAAAGCCTGATGAGCCAAGT 676
Query 687 TGGGAGAGCCCTTGGGGTCCAGGAAGACCAGGATGGCACATCGAGTGCAGTGCAATGAGT 746
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 TGGGAGAGCCCGTGGGGTCCAGGAAGACCAGGATGGCACATCGAGTGCAGTGCAATGAGT 736
Query 747 GTTCATTATCTGTCTCCGAAATTTGATATTCATGGAGGTGGTGCAGATCTTAAATTCCCG 806
| ||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||
Sbjct 737 GCTCATTATCTGTCTCCGAAATTCGACATTCATGGGGGTGGTGCAGATCTGAAATTCCCA 796
Query 807 CATCATGAAAATGAGATCGCCCAGACATGTGCTGCATGTGAGGATAGTGGTGTAAATTAC 866
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 797 CATCATGAAAATGAGATCGCCCAAACATGTGCTGCATGTGAGGATAGTGGTGTGAATTAC 856
Query 867 TGGTTGCATAATGGGCATGTCACTATCAACAACGAGAAGATGGCAAAATCAAAGCACAAC 926
||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||
Sbjct 857 TGGTTGCATAATGGGCATGTCACTATCAATAACGAGAAGATGGCAAAATCAAAGAAAAAC 916
Query 927 TTTAAAACGATTAGAGAAATAACCGCTAGCTACCATCCATTGGCTCTGAGGCACTTCTTG 986
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 917 TTTAAAACGATTAGAGAAATCACAGCTAGCTACCATCCATTGGCTCTGAGGCACTTCTTG 976
Query 987 ATGAGTGCACAGTACCGGTCTCCTCTGAGTTTCACTGCCTCGCAGCTAGAGAGTTCGTCA 1046
||||||||||||||||||||||||||||| ||| | || |||||||||||||||||||||
Sbjct 977 ATGAGTGCACAGTACCGGTCTCCTCTGAGCTTCTCGGCGTCGCAGCTAGAGAGTTCGTCA 1036
Query 1047 GAAGCTTTATACTATGTTTACCAGACTTTACAAGATCTTGATGAAGGTCTGTCACCATAT 1106
|| ||||| || |||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1037 GACGCTTTGTATTATGTTTATCAGACTTTACAAGATCTTGATGAAGATCTGTCACCATAT 1096
Query 1107 CAAGACGCATTGTCTGAAGATGGTGGAAAATCTGAACAAACTGCAGAAGGAAAAGACATC 1166
| ||| |||||||||||||||||||||||| ||||||| ||| ||||||| |||||||||
Sbjct 1097 CGAGAAGCATTGTCTGAAGATGGTGGAAAAGCTGAACAGACTCCAGAAGGGAAAGACATC 1156
Query 1167 ATTAAGAAGCTAAAAACTGAGTTTGAATCAAAGATGTTAGACGATTTGAATACTGCCCAT 1226
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1157 ATTAAGAAGCTAAAAAGTGAGTTTGAATCAAAGATGTTAGACGATTTGAATACCGCCCAT 1216
Query 1227 ATACTAACTGGTGCTTACCAAGATGCATTGAAATTCATCAATGCTTCACT-CAGCAAGCT 1285
||||| |||||||||||||||||||||||||||||||| || ||| || |||||||||
Sbjct 1217 ATACTTACTGGTGCTTACCAAGATGCATTGAAATTCATAAACGCTA-ACCGCAGCAAGCT 1275
Query 1286 CAAGAAAATGCAGAAGAAGCAGCGAATGTCAATGCTTGTGTCACTCGTTGAGATTGAGAA 1345
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1276 CAAGAAAATGCAGAAGAAGCAGCGAATGTCGATGCTTGTGTCACTAGTTGAGATTGAGAA 1335
Query 1346 AGCAGCAAGGGAAGTTCTTGATGTACTTGGTTTACTCACTACACTGAGCTATGCCGAGAT 1405
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1336 AGCAGCAAGGGAAGTTCTTGATGTACTTGGTTTGCTCACTACACTGAGCTATGCCGAGGT 1395
Query 1406 TTTGAAAGAAATGAAACTAAAAACACTAATAAGAGCAGAAATTGGAGAAGAAGGTATTTC 1465
|||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||
Sbjct 1396 TTTGAAAGAAATGAAACTAAAAACCCTAATAAGAGCAGAAATGGGAGAAGAAGATATTTT 1455
Query 1466 GCAGTTAATAGAAGAAAGGATAACAGCCAGGAAGAATAAAGATTTCGCGAAAAGTGATGA 1525
| | ||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 1456 ACGGGAAATAGAAGATAGGATAACAGCGAGGAACAATAAAGATTTTGCGAAAAGTGATGA 1515
Query 1526 GATTAGAGAGAAACTGACAAGAAAAGGAATAGCGTTAATGGACATT-GGCAAAGAAACTG 1584
||| ||| | |||||| | ||||||||||||||||||||||| || |||||||||||||
Sbjct 1516 GATCAGAAAAAAACTGTCGAGAAAAGGAATAGCGTTAATGGAT-TTCGGCAAAGAAACTG 1574
Query 1585 TATGGAGACCATGCTTCCCTTCTCAGGCTGATTCCAGCACTTGAGCT-TAGAGCAGAGTC 1643
||||||| ||||| ||||||||||||||||||||||||| |||||| | || |||||
Sbjct 1575 TATGGAGGCCATGTTTCCCTTCTCAGGCTGATTCCAGCAATTGAGCAAT-GAACAGAGAG 1633
Query 1644 ATGGAGATAGTTAACGGTTTCTTCATTTCTCTAACTCTTCTTCTTTAGCCTTTTGTTTGA 1703
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1634 ATGGAGATAAACAACGATTTCTTCATTTCTCTAACTCTTCTTCTTTAGCCTTTTGTTTGA 1693
Query 1704 GGCTCTTTCTTTATAACTCTGTTTTTGGAATTGTGCAATGACTTCAAAATATACACTTGT 1763
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1694 GGCTCTTTCTCTATAACTCTGTTTTTGGAATTGTGCAATGACTTCTAAATATACACTTGT 1753
Query 1764 TGCTGTTTGTTGTATTCTTACCATTCACAATGACATTGTAACAATATTGTTACTTTG 1820
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1754 TGCTGTTTGTTGTATTCTTAACATTCACAATGACATTGTAACAATATTGTTACTTTG 1810
> Ahg898573 jgi|Araly1|898573|Al_scaffold_0005_2539
Length=1458
Score = 929 bits (503), Expect = 0.0
Identities = 912/1106 (82%), Gaps = 41/1106 (4%)
Strand=Plus/Plus
Query 93 ATGGAGGCGGAGAAAATGGAATTGA-AGCTCTACAACACGATGACGCAACAGAAAGAAGT 151
||||||| ||||||| ||| |||| | | || ||||||||||| || |||||||||
Sbjct 1 ATGGAGGAGGAGAAACCGGAGTTGACA-TTGTATAACACGATGACTCAGTTGAAAGAAGT 59
Query 152 TTTGATTCCAATCACTCCTGGCAAAATC-GGATTATACGTCTGTGGTATCACCGCTTACG 210
||| | || |||| ||| ||||| ||| ||| | || |||||||| |||||||| ||||
Sbjct 60 TTTTAAGCCGATCAATCCCGGCAAGATCGGGA-TGTATGTCTGTGGCATCACCGCCTACG 118
Query 211 ATT-TCAGCCATATCGGCCATGCTCGCGCCGCCGTTTCCTTCGATGTTCTTTACAGATAC 269
||| | |||||||| || || ||||| |||||||| || || || | |||||||| |||
Sbjct 119 ATTAT-AGCCATATTGGGCACGCTCGTGCCGCCGTCTCTTTTGACCTCCTTTACAGGTAC 177
Query 270 TTGAA-GCATTTGGATTATGATGTTACTTTTGTCCGCAATTTCACTGATGTTGATGACAA 328
|| || ||| |||| |||||| |||| || |||| | ||||| || ||||||||||||||
Sbjct 178 TT-AAGGCACTTGGGTTATGAAGTTAATTATGTCAGAAATTTTACAGATGTTGATGACAA 236
Query 329 GATTATTGATCGTGCTAATAAGAATGGAGAAGACCCGTTAGATTTGAGTAATCGGTTTTG 388
| || | ||| | | ||||||| |||||||||||||||||||| |||||
Sbjct 237 GGCTA--AAAAGTG----T--G--GGGAGAAG--CCGTTAGATTTGAGTAATCGCTTTTG 284
Query 389 CGATGAATAT-TTGGTAGATATGGGTGCTCTGCAGTGCCTCCCTCCCACCCACCAGCCTC 447
||| || ||| || |||||||| |||||| |||||||||| |||||||| ||||||||
Sbjct 285 CGAGGAGTATCTT-CTAGATATGACTGCTCTTCAGTGCCTCCTTCCCACCCGCCAGCCTC 343
Query 448 GTGTCAGCGAACATATGGA-CAACATCATTAAGATGATAGAAAAGATCATTGAGAAA--G 504
||||||| || |||||||| | ||||||||||||||||||||||||||||||| ||| |
Sbjct 344 GTGTCAGTGACCATATGGAGC-ACATCATTAAGATGATAGAAAAGATCATTGA-AAACGG 401
Query 505 ATTGTGGGTATG-TAGTGGAAGGGGATGTGTTCTTCTCCGTTGACAAATCACCGAATTAT 563
| |||||||||| | |||| || |||||||||||||| || || ||||||||||||||
Sbjct 402 A-TGTGGGTATGCT-GTGGGTGGAGATGTGTTCTTCTCAGTGGATAAATCACCGAATTAC 459
Query 564 GGGAAATTATCTGGGCAGTTG-TTGGAACATACACGAGCTGGTGAGCGTGTTGCTGTTGA 622
|| ||||||||||||| | |||| ||||| | ||||||| ||||||||||||||||
Sbjct 460 GGTCAATTATCTGGGCA-ACGACTGGATCATACTCAAGCTGGTAAGCGTGTTGCTGTTGA 518
Query 623 TTCGAGAAAGCGTAACCCTGCTGATTTTGCATTATGGAAGGCGGCAAAGCCTGATGAGCC 682
|| || ||||| || |||||||| ||||||||||||||||| ||||| ||| ||| ||
Sbjct 519 CTCAAGGAAGCGCAATCCTGCTGACTTTGCATTATGGAAGGCTGCAAAATCTGGTGAACC 578
Query 683 AAGTTGGGAGAGCCCTTGGGGTCCAGGAAGACCAGGATGGCACATCGAGTGCAGTGCAAT 742
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 579 AAGTTGGGAGAGTCCTTGGGGTCCAGGAAGACCAGGATGGCACATTGAGTGCAGTGCCAT 638
Query 743 GAGTGTTCATTATCTGTCTCCGAAATTTGATATTCATGGAGGTGGTGCAGATCTTAAATT 802
||||| |||||| ||||||| || |||||| |||||||| ||||| |||||||| |||||
Sbjct 639 GAGTGCTCATTACCTGTCTCAGAGATTTGACATTCATGGTGGTGGCGCAGATCTAAAATT 698
Query 803 CCCGCATCATGAAAATGAGATCGCCCAGACATGTGCTGCATGTGAGGATAGTGGTGTAAA 862
|||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 699 CCCGCACCATGAAAATGAGATCGCCCAGACATGTGCTGCTTGTGAAGATAGTGGTGTGAA 758
Query 863 TTACTGGTTGCATAATGGGCATGTCACTATCAACAACGAGAAGATGGCAAAATCAAAGCA 922
||||||||||||||||||||||||||| | |||||| | |||||||| ||||||| | |
Sbjct 759 TTACTGGTTGCATAATGGGCATGTCACCAACAACAATGTGAAGATGGGAAAATCACTGGA 818
Query 923 CAACTTTAAAACGATTAGAGAAATAACCGCTA-GCTACCATCCATTGGCTCTGAGGCACT 981
||||||| |||||||||||||| || |||| | || |||||| |||||||||| ||||
Sbjct 819 CAACTTTTTTACGATTAGAGAAATCACGGCTAAG-TATCATCCACTGGCTCTGAGACACT 877
Query 982 TCTTGATGAGTGCACAGTACCGGTCTCCTCTGAG-T-TTCACTGCCTCGCAGCTAGAGAG 1039
|||||||||||||||||||||| |||||||||| | ||| || ||||||||||||||
Sbjct 878 TCTTGATGAGTGCACAGTACCGTTCTCCTCTGAACTATTCGGTG--TCGCAGCTAGAGAG 935
Query 1040 TTCGTCAGAAGCTTTATACTATGTTTACCAGACTTTACAAGATCTTGATGAAGGTCTGTC 1099
||| || || |||||||| | |||||| ||||| ||| |||| |||| | ||| ||| ||
Sbjct 936 TTCATCGGATGCTTTATATTGTGTTTATCAGACATTAGAAGACCTTGTTAAAGCTCTATC 995
Query 1100 ACCATATCAAGACGCATTGTCTGAAGATGGTGGAAA-ATCTGAACAAACTGCAGAAGGAA 1158
||||||| ||| | | || || ||||| |||||| | || |||| |||| |||| |
Sbjct 996 GCCATATCGAGAAGAAATGAGTGGAGATGTTGGAAAGA-CTCAACAGTCTGCGGAAGCCA 1054
Query 1159 AAGACATCATTAAGAAGCT-AAAAAC 1183
|||| || || |||||| | ||||||
Sbjct 1055 AAGAGATGATAAAGAAGGTGAAAAAC 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68448170265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5