BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38900.1
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494088 jgi|Araly1|494088|fgenesh2_kg.7__3521__AT5G38900.1 1386 0.0
> Ahg494088 jgi|Araly1|494088|fgenesh2_kg.7__3521__AT5G38900.1
Length=966
Score = 1386 bits (750), Expect = 0.0
Identities = 901/973 (93%), Gaps = 13/973 (1%)
Strand=Plus/Plus
Query 12 TTTTGACTTGTCTCTCCATTAATTAGAGGTTTCACGATCTTCTTCCTCCAATCTTTTTCC 71
||||||||| ||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 1 TTTTGACTTCTCTCTCC----ATTAGAGGATTCACGATCTTCTTCCTCCATTCTTTTTCC 56
Query 72 AGGAAAAGTCATTATGGCTGAGTCTGCAAGCAACACCGCTTCAAAAAAGCTCATTCAAAT 131
||||| | |||| ||||||||||||||||||||||||| ||||| |||||| ||||| ||
Sbjct 57 AGGAACACTCATAATGGCTGAGTCTGCAAGCAACACCGGTTCAAGAAAGCTTATTCAGAT 116
Query 132 CGACGTAAGCTCGGATTCGGTGTGTCCATGGTGCTTTGTAGGAAAGAAGAATCTTGACAA 191
|| || |||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 117 TGATGTGAGCTCGGATTCGGTGTGTCCATGGTGCTTTGTGGGCAAGAAGAATCTTGACAA 176
Query 192 AGCTATTGAAGCATCTAAAGATCAATACAACTTCGAGATTCGATGGCGTCCGTTTTTCCT 251
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 177 AGCCATTGAAGCATCTAAAGATCAATACAACTTTGAGATTCGATGGCGTCCGTTTTTCCT 236
Query 252 TGATCCATCTGCACCTAAAGAAGGTGTGAGTAAGAAAGAGTTTTATCTACAGAAATATGG 311
||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 237 TGATCCATCTGCACCGAAAGACGGTGTGAGTAAGAAAGAGTTTTATCGACAGAAATATGG 296
Query 312 AAACAGATATCAAGGAATGTTTGCAAGAATGTCCGAGGTCTTTAAAGGTCTTGGCTTAGA 371
|||||||||| |||||||||| || |||||||||||| |||||||||||||||| |||||
Sbjct 297 AAACAGATATGAAGGAATGTTCGCCAGAATGTCCGAGATCTTTAAAGGTCTTGGATTAGA 356
Query 372 GTTTGACACAGCTGGTCTCACAGGAAACAGTCTGGATAGTCATAGACTTATACATTATAC 431
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 357 GTTTGACACAGCCGGTCTCACAGGCAACAGTCTGGATAGTCATAGACTTATACATTACAC 416
Query 432 CGGTAAACAAGCGCCGGAGAAGCAACATACACTTGTTGAGGAACTGTTTATCGGTTACTT 491
|||||||||||||||||| || ||||||| ||||||||||||| ||||||||||||||||
Sbjct 417 CGGTAAACAAGCGCCGGACAAACAACATAAACTTGTTGAGGAATTGTTTATCGGTTACTT 476
Query 492 TACGCAGGGAAAGTTCATCGGTGATAGAGAGTTTTTGGTAGAGACGGCTAACAAGGTTGG 551
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 477 CACGCAGGGAAAGTTCATCGGTGACAGGGAGTTTTTGGTAGAGACGGCTAAAAAGGTTGG 536
Query 552 GATAGAAGGAGCAGAAGAATTCCTCTCAGACCCCAACAATGGAGTTACAGAGGTGAAAGA 611
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 537 GATAGAAGGAGCAGAAGAATTCCTCTCAGACCCCAACAATGGACTCACAGAGGTGAAAGA 596
Query 612 AGAACTGGCAAAGTATTCGAAAAATATCACCGGAGTTCCAAATTACACTATCAATGGGAA 671
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 597 AGAACTGGCAAAGTATTCGCGAAATATCACCGGAGTTCCAAATTACACTATCAATGGGAA 656
Query 672 GGTGAAGCTGAGTGGTGCGCAACCGCCCGAGACATTCCAGAGTGCGTTTAAAGCGGCCTC 731
|||||| ||||| || || |||||||| || |||||||||||||||||||||||||||||
Sbjct 657 GGTGAAACTGAGCGGCGCACAACCGCCGGAAACATTCCAGAGTGCGTTTAAAGCGGCCTC 716
Query 732 GGCTTGAAACACAATCAGTGTACTCAAGAGTTGTTGAAGTTTTACATCTATGGAGATTCT 791
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 717 AGCTTGAAACACAAACAGTGAACTCAAGAGTTGTTGAAGTTTTACATCTATGGAGATAGT 776
Query 792 CTGTTTCTGTTGTTTGAGCTTTAAGTTATTGACTTTTCAAAGAAGTTGGTGTAATAAGAT 851
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||
Sbjct 777 CTGTTTCTGTTGTTTGAACTTTAAGTTATTGACTTTTCAA-GAAGTTGGTGTAATAA-AT 834
Query 852 TT-TTCTTT-ATTGGTTTGTCTAA-TAATTCAGAGAAGTTGATTTCAAGCA--CT-CTTC 905
|| |||| | || ||||||||||| ||||||||||||||||||||||| || || ||||
Sbjct 835 TTGTTCTGTGAT-GGTTTGTCTAAATAATTCAGAGAAGTTGATTTCAAACATTCTTCTTC 893
Query 906 TTCTTCTTGCTCTGATCTCAAAACAATGTTCTAGATAACAATTTTTTGAATGATTCAAAC 965
|||||||||||||||||||||| |||||||||||||||||| || ||||| |||||||||
Sbjct 894 TTCTTCTTGCTCTGATCTCAAAGCAATGTTCTAGATAACAAATTCTTGAAAGATTCAAAC 953
Query 966 TACTTTTCCTTCC 978
|| ||||||||||
Sbjct 954 TATTTTTCCTTCC 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36331139901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5