BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G39050.1 Length=1480 Score E Sequences producing significant alignments: (Bits) Value Ahg494080 jgi|Araly1|494080|fgenesh2_kg.7__3513__AT5G39050.1 2141 0.0 Ahg947925 jgi|Araly1|947925|scaffold_704154.1 845 0.0 Ahg494079 jgi|Araly1|494079|fgenesh2_kg.7__3512__AT5G39090.1 664 0.0 Ahg891837 jgi|Araly1|891837|Al_scaffold_0007_3823 219 6e-56 > Ahg494080 jgi|Araly1|494080|fgenesh2_kg.7__3513__AT5G39050.1 Length=1452 Score = 2141 bits (1159), Expect = 0.0 Identities = 1360/1458 (93%), Gaps = 10/1458 (1%) Strand=Plus/Plus Query 3 AACACATCATGGTGAACGAAGAAATGGAGTCATCACTTAAAGTCATCGACGTGGCACGAG 62 |||||||||| ||| | |||||||||| |||||||||||| ||||||||||||||| || Sbjct 1 AACACATCATAATGACCAAAGAAATGGATTCATCACTTAAAATCATCGACGTGGCACAAG 60 Query 63 TCACACCATCAAACTCCGACTCGTCCGAGTCACTCACTCTCCCACTCACCTTCTTCGACC 122 || | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCCCTCCATCAAACTCTGACTCGTCCGAGTCACTCACTCTCCCACTCACCTTCTTCGACC 120 Query 123 TCCTCTGGTACAAACTTCACGCCGTCGAACGAGTCATCTTCTACAAACTCACCGACGCAA 182 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 121 TCCTCTGGTATAAACTTCACGCCGTCGAACGAGTCATCTTCTACAAACTCACTGACGCAA 180 Query 183 GTCGTCCTTTCTTTGACTCAGTCATCGTCCCAAACCTCAAAACATCTCTCTCCTCATCCC 242 |||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||| Sbjct 181 CTCGTCCTTTCTTCGACTCAGTCATCGTCCCCAACCTCAAAACCTCTCTCTCCTCCTCCC 240 Query 243 TCTCTCACTACCTCCCACTCGCCGGAAAACTCGTGTGGGAACCACTTGATCCCAAACCGA 302 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 241 TCTCTCACTACCTCCCACTCGCCGGAAAACTCGTCTGGGAACCACTTGATCCCAAACCAA 300 Query 303 AAATCGTCTACACCCCAAACGACGCCGTTTCATTCACCGTCGCCGAGTCAAACGCAGACT 362 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 301 AAATCATCTACACCCCAAACGACGCCGTTTCATTCACCGTCGCCGAGTCAAACGCCGACT 360 Query 363 TCTCACGTTTAACCGGCAAAGAACCGTTCCCCACCACCGAGTTATACCCGTTAGTCCCCG 422 ||||||||||| ||||||| ||||| | ||||||| |||||||||||||||||||||||| Sbjct 361 TCTCACGTTTATCCGGCAACGAACCATACCCCACCGCCGAGTTATACCCGTTAGTCCCCG 420 Query 423 AGTTACATGTCTCCGACGACTCAGCTTCCGCCGTGTCGTTTCAAGTCACGTTATTTCCAA 482 ||||||| || ||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 421 AGTTACAAGTTTCCGATGACTCAGCCTCCGCCGTGTCGTTTCAAGTCACGTTATTTCCAA 480 Query 483 ACCAAGGGTTTTGCATCAGCGTTAATGCACATCATGCCGTTTTAGATGGAAAAACGACAA 542 ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 481 ACCAAGGGTTTTGCATCTGCGTTAACGCACATCATGCCGTTTTAGATGGAAAAACGACAA 540 Query 543 CCAACTTTCTCAAATCTTGGGCACGCACATGTAAAAACCAAGATTCTTTTCTACCGCAGG 602 ||| ||||||||||||||||||| |||||||||||| |||||||||| ||||||| | | Sbjct 541 CCATGTTTCTCAAATCTTGGGCACACACATGTAAAAATCAAGATTCTTCTCTACCGGACG 600 Query 603 ATCTAATCCCAGTTTACGATCGTACGGTCATAAAAGATCCAATGGATTTAGATAC-AAAG 661 |||| |||||| |||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 601 ATCTTATCCCAATTTACGATCGTACGGTCATAAAAGATCCAACGGATTTAGATACAAAAG 660 Query 662 ATCTTAAACGCTTGGCACAGAGTAGCCAAAGTGTTCACCGGTGGTAAAGAACCAGAAAAC 721 |||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| Sbjct 661 -TCTTAAACGCTTGGCACAAAGTAGGCAAAGTCTTCACCGGTGGTAAAGAACCAGAAAAC 719 Query 722 CCCAAGAGTTTAAAGCTTTTATGGTCGCCGG-AGATTGGTCCTGACGTTTTCCGATACAC 780 || || ||||||||||||||||||||||||| || ||||||| ||||||||||||||||| Sbjct 720 CCTAAAAGTTTAAAGCTTTTATGGTCGCCGGAAG-TTGGTCCCGACGTTTTCCGATACAC 778 Query 781 TCTCAATCTCACTAGAGAAGATATCCAAAAGCTTCGAGAGAGACTCAAGAAAGAGTCTTC 840 ||||||||| |||| |||| |||||||||||||| |||| |||||||||||||||||||| Sbjct 779 TCTCAATCTTACTAAAGAAAATATCCAAAAGCTTAGAGAAAGACTCAAGAAAGAGTCTTC 838 Query 841 TTCTTCCTCTGTTTCCTCATCACCCAAAGAGCTTCGTTTATCAACGTTTGTGATTGTTTA 900 | ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 839 --C-TCCTCTGTTTCATCATCACCAAAAGAGCTTCGTTTATCAACGTTTGTGATTGTTTA 895 Query 901 CTCTTATGCTTTAACGTGTTTAATCAAAGCTCGAGGCGGTGATCCGAGTAGACCAGTCGG 960 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 896 CTCTTATGCTTTAACGTGTTTAATCAAAGCTCGAGGCGGTGATCCGAATAGACCAGTCGG 955 Query 961 GTACGGATTCGCTGTGGATTGTCGAAGCCTTATGGTTCCACCGGTTCCATCGAGTTATTT 1020 |||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 956 GTACGGATTCGCGGTGGATTGTCGAAGCCTTATGGTTCCACCAGTTCCTTCTAGTTATTT 1015 Query 1021 TGGTAATTGTGTATCTGCTTGTTTTAAAATGTCGT-TAACGGCAGAGACTTTTATGAGTG 1079 |||||||||||| |||||||||||||||||| | | ||| |||||||| ||||||||||| Sbjct 1016 TGGTAATTGTGTCTCTGCTTGTTTTAAAATGCC-TATAAAGGCAGAGAGTTTTATGAGTG 1074 Query 1080 AAGAAGGGTTTTTAGCTGCTGCGAGAATGGTTAGTGATTCTGTTGAGGCATTGGATGAGA 1139 ||||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||||||| Sbjct 1075 AAGAAGGATTTTTAGCTGCTGCAAGATTGGTTAGTGATTCGGTTGAGGCATTGGATGAGA 1134 Query 1140 ATGTTGCATTGAAGATTCCAGAGATTTTGGAAGGGTTTACGACTCTTTCACCAGGAACAC 1199 |||| |||| ||||||||||||| ||||||||||||||||||||||| |||||||| ||| Sbjct 1135 ATGTAGCATGGAAGATTCCAGAGCTTTTGGAAGGGTTTACGACTCTTCCACCAGGAGCAC 1194 Query 1200 AGGTTTTGTCTGTTGCCGGGTCGACCCGGTTCGGAGTTTACGGGTTGGATTTTGGGTGGG 1259 | ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| Sbjct 1195 AAGTTTTGTCTGTTGCCGGGTCGACCCGGTTTGGAGTATACGGGTTGGATTTCGGGTGGG 1254 Query 1260 GTAGACCGGAGAAAGTGGTGGTTGTGTCAATTGACCAAGGTGAAGCGATTTCTTTTGCGG 1319 |||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||| Sbjct 1255 GTAGACCGGAGAAAGTGGTGGTTGTGTCGATTGATCAAGGTGAAGCGATTTCTATTGCGG 1314 Query 1320 AGAGTAGAGATGGGAGTGGTGGTGTAGAGCTTGGCTTCTCCCTCAAGAAACATGAAATGG 1379 ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| Sbjct 1315 AGAGTAGAGATGGGAATGGTGGTGTAGAGATTGGCTTCTCGCTCAAGAAACATGAAATGG 1374 Query 1380 ATGTTCTTGTTGATTTGCTTCACAAGGGACTAGAAAATTAAATCAt-ttttttCTTTCTT 1438 ||||||||||||| |||||||| || |||||||||||||||||||| ||||||| ||||| Sbjct 1375 ATGTTCTTGTTGAGTTGCTTCATAAAGGACTAGAAAATTAAATCATATTTTTTCCTTCTT 1434 Query 1439 CAGAAGAGTAAAATAATA 1456 || ||||||||||||||| Sbjct 1435 CATAAGAGTAAAATAATA 1452 > Ahg947925 jgi|Araly1|947925|scaffold_704154.1 Length=1411 Score = 845 bits (457), Expect = 0.0 Identities = 708/827 (86%), Gaps = 26/827 (3%) Strand=Plus/Plus Query 21 AAGAAATGGAGTCATCACTTAA-AGTCATCGACGTGGCACGAGTCACACCATCAAACTCC 79 ||||||||| ||||||||||| | |||||||||| ||||||||||| || |||||||| Sbjct 16 AAGAAATGGTTTCATCACTTAACA-TCATCGACGTTGCACGAGTCACCCCTTCAAACTCT 74 Query 80 GACTCGTCCGAGTCACTCACTCTCCCACTCACCTTCTTCGACCTCCTCTGGTACAA-ACT 138 || ||| |||| ||||||||||||||||| |||||||||||||||||||||| ||| | | Sbjct 75 GAATCGACCGACTCACTCACTCTCCCACTAACCTTCTTCGACCTCCTCTGGTTCAAGA-T 133 Query 139 TCACGCCGTCGAACGAGTCATCTTCTACAAACTCACCGACGCAAGTCGTC-CTTTCTTTG 197 ||||||||| ||||||||||||||||||| ||||| |||||||| | | | ||||||||| Sbjct 134 TCACGCCGTGGAACGAGTCATCTTCTACAGACTCAACGACGCAACTTG-CTCTTTCTTTG 192 Query 198 ACTCAGTCATCGTCCCAAACCTCAAAACATCTCTCTCCTCATCCCTCTCTCACTACCTCC 257 |||||||||||||||| || |||||||| |||||||||| ||||||||||||||| |||| Sbjct 193 ACTCAGTCATCGTCCCCAATCTCAAAACCTCTCTCTCCTTATCCCTCTCTCACTATCTCC 252 Query 258 CACTCGCCGGAAAACTCGTGTGGGAACCACTTGATCCCAAACCGAA-AATCGTCTACACC 316 ||||||||||||||||||| ||| ||||| |||| |||||||| || || || |||||| Sbjct 253 CACTCGCCGGAAAACTCGTCTGGAAACCATTTGAACCCAAACC-AAGCATTGTATACACC 311 Query 317 CCAAACGACGCCGTTTCATTCACCGTCGCCGAGTCAAACGCAGACTTCTCACGTTTAACC 376 ||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||| Sbjct 312 CCAAACGACGCCGTTTCATTCACCGTCGCCGAGTCAAACGCCGATTTCTCCCGCTTAACC 371 Query 377 GGCAA-AGAACCGTTCCCCACCACCGAGTTATACCCGTTAGTCCCCGAGTTACATGTCTC 435 || || |||||| ||| || ||| |||||| |||| ||||||||||||||||| ||| Sbjct 372 GG-AATAGAACCATTCTCCTCCAACGAGTTGCACCCATTAGTCCCCGAGTTACAAAACTC 430 Query 436 CGACGACTCAGCTTCCGCCGTGTCGTTTCAAGTCACGTTATTTCCAAACCAAGGGTTTTG 495 ||||||||| ||||||| | |||| ||||||||||||||||||||||||||||||||||| Sbjct 431 CGACGACTCGGCTTCCGTCATGTCATTTCAAGTCACGTTATTTCCAAACCAAGGGTTTTG 490 Query 496 CATCAGCGTTAAT-GCACATCATGCCGTTT-TAGATGGAAAAACGACAACCAACTTT-CT 552 |||| |||| || ||||| |||||||||| | ||||| ||||||||||||| |||| || Sbjct 491 CATCGGCGT-AACCGCACACCATGCCGTTTCT-GATGGGAAAACGACAACCA-CTTTTCT 547 Query 553 CAAATCTTGGGCACGCA-CATGTAAAAACCAAGATTCTTTTCTACCGCAGGATCTAATCC 611 |||||||||||| | | | |||||| |||||||||||| ||||||| ||||||| || | Sbjct 548 CAAATCTTGGGCTCACTTC-TGTAAACACCAAGATTCTTCTCTACCGGAGGATCTGATTC 606 Query 612 CAGTTT-ACGATCGTACGGTCATAAAAGATCCAATGGATT-TAGATACAAAGA-TCTTAA 668 | |||| |||||||||||||||||||| ||||| | || | |||| ||| | | || | Sbjct 607 C-GTTTTACGATCGTACGGTCATAAAAAATCCACCGAATAGT-GATATAAA-ACTTTTGA 663 Query 669 ACGCTTGGCACAGAGTAGCCAAAGTGTTCACCGGTGGTAAAGAACCAGAAAACCCCAAGA 728 || | |||||| |||||||| ||||| |||| |||||||||||| |||||||||||| Sbjct 664 ACTCATGGCACTCTTTAGCCAAAATGTTCTCCGGCGGTAAAGAACCACAAAACCCCAAGA 723 Query 729 GTTTAAAGCTTT-TATGGTCGCCGGAGATTGGTCCTGACGTTTTCCGATACACTCTCAAT 787 |||| |||||| | ||||||| ||||| ||||||||| || ||||||||||| | Sbjct 724 GTTTGAAGCTTCCTCCA-TCGCCGGTGATTGATCCTGACGTCTTACGATACACTCTTGAG 782 Query 788 CTCACTAGAGAAGATATCCAAAAGCTTCGAGAGAGACTCAAGAAAGA 834 || ||| | ||||||||||||| |||||||||||||||||||| ||| Sbjct 783 CTAACTCGCGAAGATATCCAAATGCTTCGAGAGAGACTCAAGAGAGA 829 > Ahg494079 jgi|Araly1|494079|fgenesh2_kg.7__3512__AT5G39090.1 Length=1354 Score = 664 bits (359), Expect = 0.0 Identities = 568/667 (85%), Gaps = 22/667 (3%) Strand=Plus/Plus Query 24 AAATGGAGT-CATCACTTAAA-GTCATCGACGTGGCACGAGTCACACCATCAAACTCCGA 81 |||| |||| |||||| |||| | ||| ||||| ||||||||||||| || ||||| | Sbjct 5 AAAT-GAGTCCATCAC-TAAACATGATCCACGTGTCACGAGTCACACCTTCCAACTCTAA 62 Query 82 CTCGTCCGAGTCACTCACTCTCCCACTCACCTTCTTCGACCTCCTCTGG-TACAAACTTC 140 ||||||||||||||| |||||||| ||||||||||| ||||| || ||| | ||||| | Sbjct 63 CTCGTCCGAGTCACTTACTCTCCCGCTCACCTTCTTTGACCTTCTATGGCT-CAAAC-AC 120 Query 141 -ACGCCGTCGAACGAGTCATCTTCTACAAACTCACCGACGCAAGTCGTCCTTTCTTTGAC 199 | ||||||||||||||||||||||||||||||||||||| || |||||||||||| || Sbjct 121 AAAGCCGTCGAACGAGTCATCTTCTACAAACTCACCGACGTAACTCGTCCTTTCTTCGAA 180 Query 200 TCAGTCATCGTCCCAAACCTCAAAACATCTCTCTCCTCATCCCTCTCTCACTACCTCCCA 259 | |||||||||||| ||||||||| | |||||||||||||||||||||||||| |||||| Sbjct 181 TTAGTCATCGTCCCCAACCTCAAATCCTCTCTCTCCTCATCCCTCTCTCACTATCTCCCA 240 Query 260 CTCGCCGGA-AAACTCGTGTGGGAACCACTTGATCCCAAACCGAAA-ATCGTCTACACCC 317 |||||||| ||| || | ||||| |||||||||| ||||| ||| ||||||||| | | Sbjct 241 CTCGCCGGCCAAA-TCCTCTGGGAGTCACTTGATCCAAAACC-AAACATCGTCTACTCAC 298 Query 318 CAAACGACGCCGTTTCATTCACCGTCGCCGAGTCAAACGCAGACTTCTCACGTTTAACCG 377 ||||||| ||||||||||||||||||||||||| ||||| || ||||| |||||||| | Sbjct 299 CAAACGATACCGTTTCATTCACCGTCGCCGAGTCCAACGCCGATTTCTCTCGTTTAACAG 358 Query 378 GCAAAGAACCGTTCCCCACCACCGAGTTATACCCGTTAGTCCCCGAGTTACATGTCTCCG 437 |||||||||| ||| || ||| |||||| |||| ||||||||||||||||| ||||| Sbjct 359 GCAAAGAACCATTCTCCTCCAACGAGTTGCACCCATTAGTCCCCGAGTTACAAAACTCCG 418 Query 438 ACGACTCAGCTTCCGCCGTGTCGTTTCAAGTCACGTTATTTCCAAACCAAGGGTTTTGCA 497 ||||||| ||||||| | |||||||||||||||| ||||||||||||||||||||||||| Sbjct 419 ACGACTCGGCTTCCGTCATGTCGTTTCAAGTCACATTATTTCCAAACCAAGGGTTTTGCA 478 Query 498 TCAGCGTTAATGCACATCATGCCGTTTTAGATGGAAAAACGACAACCAACTTT-CTCAAA 556 || | || | ||||| |||||||||| |||||||||||||| |||| |||| |||||| Sbjct 479 TCGGTGTCACCGCACACCATGCCGTTTCCGATGGAAAAACGACGACCA-CTTTTCTCAAA 537 Query 557 TCTTGGGCACGCACATGTAAAAACCAAGATTCTTTTCTACCGCAGGATCTAATCCCAGTT 616 |||||||| | | ||||||| | |||||||||| ||||||| ||||||||||||| ||| Sbjct 538 TCTTGGGCTCACTTATGTAAACATCAAGATTCTTCTCTACCGGAGGATCTAATCCC-GTT 596 Query 617 -TACGATCGTACGGTCATAAAAGATCCAATGGAT-TTAGATAC-AAAGATCTT-AAACGC 672 ||||||||||||||||| |||| |||| ||| || ||||| |||| |||| ||| Sbjct 597 CTACGATCGTACGGTCATTAAAGGTCCACCGGAGATT-GATACTAAAG-TCTTGAAAAT- 653 Query 673 TTGGCAC 679 ||||||| Sbjct 654 TTGGCAC 660 > Ahg891837 jgi|Araly1|891837|Al_scaffold_0007_3823 Length=1254 Score = 219 bits (118), Expect = 6e-56 Identities = 163/185 (88%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 26 ATGGAGTCATCACTTAA-AGTCATCGACGTGGCACGAGTCACACCATCAAACTCCGACTC 84 ||||| ||||||||||| | ||||||||||||||| |||||| || |||||||| ||||| Sbjct 1 ATGGATTCATCACTTAACA-TCATCGACGTGGCACAAGTCACTCCTTCAAACTCTGACTC 59 Query 85 GTCCGAGTCACTCACTCTCCCACTCACCTTCTTCGACCTCCTCTGGTACAAACTTCACGC 144 | | ||||||||||||||||||||||||||||||||||| | | | |||||||| ||| Sbjct 60 GGCGGAGTCACTCACTCTCCCACTCACCTTCTTCGACCTTATTTATTTCAAACTTCGCGC 119 Query 145 CGTCGAACGAGTCATCTTCTACAAACTCACCGACGCAAGTCGTCCTTTCTTTGACTCAGT 204 |||||||||||||||||||||| |||||| ||||||| ||| |||||||| |||||||| Sbjct 120 TGTCGAACGAGTCATCTTCTACAGACTCACTGACGCAACTCGCCCTTTCTTCGACTCAGT 179 Query 205 CATCG 209 ||||| Sbjct 180 CATCG 184 Score = 200 bits (108), Expect = 2e-50 Identities = 164/190 (86%), Gaps = 8/190 (4%) Strand=Plus/Plus Query 281 GAACCACTTGATCCCAAACCGAA-AATCGTCTACACCCCAAACGACGCCGTTTCATTCAC 339 ||||| ||||||| |||||| || |||||||| ||| ||||||||||||||||||||| Sbjct 184 GAACCTCTTGATCTCAAACC-AAGCATCGTCTATTCCCAAAACGACGCCGTTTCATTCAC 242 Query 340 CGTCGCCGAGTCAAACGCAGACTTCTCACGTTTAACCGGCAA-AGAACCGTTCCCCACCA 398 ||||||||| ||||||| || ||||| |||||| ||||||| | |||| |||||| ||| Sbjct 243 TGTCGCCGAGACAAACGCTGAGTTCTCTCGTTTATCCGGCAACA-AACCATTCCCCTCCA 301 Query 399 CCGAGTTATACCCGTTAGTCCCCGAGTTAC--ATGTCTCCGACGACTCAGCTTCCGCCGT 456 |||||||||||||||||||||||||||||| | | ||||||||||||||| |||| || Sbjct 302 CCGAGTTATACCCGTTAGTCCCCGAGTTACTCA-G-CTCCGACGACTCAGCCTCCGTTGT 359 Query 457 GTCGTTTCAA 466 |||||| ||| Sbjct 360 GTCGTTCCAA 369 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55383216230 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5