BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39090.1
Length=1514
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494079 jgi|Araly1|494079|fgenesh2_kg.7__3512__AT5G39090.1 1895 0.0
Ahg947925 jgi|Araly1|947925|scaffold_704154.1 712 0.0
Ahg494080 jgi|Araly1|494080|fgenesh2_kg.7__3513__AT5G39050.1 682 0.0
> Ahg494079 jgi|Araly1|494079|fgenesh2_kg.7__3512__AT5G39090.1
Length=1354
Score = 1895 bits (1026), Expect = 0.0
Identities = 1248/1356 (92%), Gaps = 12/1356 (1%)
Strand=Plus/Plus
Query 5 aaaaaaTGAATCCATCACTAAACTTCATCCACGTGTCACGAGTCACGCCATCAAACTCTA 64
||||||||| ||||||||||||| | |||||||||||||||||||| || || |||||||
Sbjct 2 AAAAAATGAGTCCATCACTAAACATGATCCACGTGTCACGAGTCACACCTTCCAACTCTA 61
Query 65 ACTCGTCGGCGTCACTCACTCTCCCGCTCACTTTCTTTGACCTTCTCTGGCTCAAACACA 124
||||||| | |||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 62 ACTCGTCCGAGTCACTTACTCTCCCGCTCACCTTCTTTGACCTTCTATGGCTCAAACACA 121
Query 125 AAGCCGTCGAACGAGTCATCTTCTACAAACTCACCGACGTAAATCGCTC-TTTATTCGAC 183
|||||||||||||||||||||||||||||||||||||||||| ||| || ||| |||||
Sbjct 122 AAGCCGTCGAACGAGTCATCTTCTACAAACTCACCGACGTAACTCG-TCCTTTCTTCGAA 180
Query 184 TCAGTCATCGTCCCCAAcctcaaatcctctctctcctcatccctctctcactacctccca 243
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 TTAGTCATCGTCCCCAACCTCAAATCCTCTCTCTCCTCATCCCTCTCTCACTATCTCCCA 240
Query 244 ctcGCCGGCCATATCATCTGGGAACCACATGATCCAAAACCGAAA-ATCGTCTACAC-CC 301
||||||||||| ||| ||||||| ||| |||||||||||| ||| ||||||||| | ||
Sbjct 241 CTCGCCGGCCAAATCCTCTGGGAGTCACTTGATCCAAAACC-AAACATCGTCTACTCACC 299
Query 302 AAAACGACGCCGTTTCATTCACCGTAGCTGAGTCAAACTCGGATTTCTCCCTTTTAACCG 361
||| ||| |||||||||||||||| || ||||| ||| | |||||||| | |||||| |
Sbjct 300 AAA-CGATACCGTTTCATTCACCGTCGCCGAGTCCAACGCCGATTTCTCTCGTTTAACAG 358
Query 362 GAAAAGAACCTTTCTCCTCCACCGAGTTACACCCATTAGTCCCGGAGTTACAAAACTCCG 421
| |||||||| |||||||||| |||||| |||||||||||||| ||||||||||||||||
Sbjct 359 GCAAAGAACCATTCTCCTCCAACGAGTTGCACCCATTAGTCCCCGAGTTACAAAACTCCG 418
Query 422 ACGACTCAGCAGCAGTCGTGTCGTTTCAAGTCACGTTATTTCCAAACCAAGGGTTTTGCA 481
||||||| || | ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 419 ACGACTCGGCTTCCGTCATGTCGTTTCAAGTCACATTATTTCCAAACCAAGGGTTTTGCA 478
Query 482 TCGGCGTAACCACACACCATGCCGTTTCTGATGGGAAAACGACAACCACGTTTCTCAAAT 541
|||| || ||| |||||||||||||||| ||||| |||||||| ||||| ||||||||||
Sbjct 479 TCGGTGTCACCGCACACCATGCCGTTTCCGATGGAAAAACGACGACCACTTTTCTCAAAT 538
Query 542 CTTGGGCTCACTTATGTAAACATCAAGACTCTTCTCTACCGGATGATCTAATTCCGTTTT 601
|||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |
Sbjct 539 CTTGGGCTCACTTATGTAAACATCAAGATTCTTCTCTACCGGAGGATCTAATCCCGTTCT 598
Query 602 ACGATCGTACGGTCATAAAAGGTCCACCGGAGATTGATACTAAAGTCTTGAAAATTTGGC 661
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ACGATCGTACGGTCATTAAAGGTCCACCGGAGATTGATACTAAAGTCTTGAAAATTTGGC 658
Query 662 ACTCTATTCATAAACCAAAAAGCTTGAAGTTGTTACCGAGACCGGAGATAGAATCCGACG 721
|||||||| |||||||||||||||||||| ||||||||| |||||||||||| |||||||
Sbjct 659 ACTCTATTGATAAACCAAAAAGCTTGAAGCTGTTACCGAAACCGGAGATAGATTCCGACG 718
Query 722 TCGTTCGATACACATTCGAACTCACTCGTGAAAACATCGAAAAGCTTCGAGATAAACTCA 781
||||||||||||||| |||||||||||||||||| |||||||||||||| || | |||||
Sbjct 719 TCGTTCGATACACATACGAACTCACTCGTGAAAATATCGAAAAGCTTCGTGAGAGACTCA 778
Query 782 AGAGAGAGTCTTCTTCGTTT-TCCTCGGTTAGATTGTCAACGTTTGTGATTACGTTTTCG 840
|||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||
Sbjct 779 AGAGAGAGTCTTCTTC-TTCCTCCTCGCTTAGATTGTCAACGTTTGTGATTACGTTTTCG 837
Query 841 TACGTTTTCACGTGCTTAATAGGATCCGGAGGCGATGATCCGAATAGACCGGTCGGGTAT 900
||| |||||||||| ||||| ||||||||||||||||||||| ||||||| |||||||||
Sbjct 838 TACATTTTCACGTGTTTAATCGGATCCGGAGGCGATGATCCGGATAGACCCGTCGGGTAT 897
Query 901 AGATTCGCGGTGGATTGTCGAAGGCTTATCGATGATCCACCGATCCCGTTGACTTATTTC 960
||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 898 AGATTCGCGGTGGATTGTCGAAGCCTTATCGATGATCCACCGATTCCGTTAACTTATTTC 957
Query 961 GGAAACTGTGTTTACTCTGCTGTGAAAATCCCGCTAGATG-CGGGGATGTTTCTTGGTGA 1019
|||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 958 GGAAACTGTGTTTACTCTGCTGTGAAAATCCCGCTA-ATGGCGGGGTTGTTTCTTGGTGA 1016
Query 1020 ACAAGG-TTTCGTGGTTGCTGCGAGATTGATTAGTGATTCGGTTGAGGAATTGGATTCAA 1078
|||||| ||| |||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1017 ACAAGGATTT-GTGGCGGCTGCGAGATTGATCAGTGATTCGGTTGAGGAATTGGATTCAA 1075
Query 1079 ATGTGGCTTGGAAGATACCGGAGCTTTTGGAAACGTATGAGAAAGCTCCTGTGGACTCAC 1138
|||||||||||||||| || |||||||||||||||| |||||| ||||| ||||| ||||
Sbjct 1076 ATGTGGCTTGGAAGATTCCAGAGCTTTTGGAAACGTGTGAGAATGCTCCAGTGGAGTCAC 1135
Query 1139 AATTTGTGTCGGTTGCCGGGTCAACCCGGTTTGGTATATACGGGTTGGATTTCGGGTGGG 1198
||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||
Sbjct 1136 AATTTGTGTCGGTTGCCGGGTCAACCCGGTTCGGTATGTACGGGTTGGATTTTGGGTGGG 1195
Query 1199 GAAAACCTTTTAAGTCGTTGTTGGTGTCGATTGATCAGAGAGGAAAGATATCAATTGCGG 1258
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 1196 GAAAACCTTTTAAGTCGTTGTTGGTGTCGATTGATCAAAGAGGAAAGATATCAATGGCTG 1255
Query 1259 AGAGTAGAGATGGAAGTGGAGGTGTTGAGATTGGCTTCTCGCTCAAGAAACAAGAAATGA 1318
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1256 AGAGTAGAGATGGAAGTGGAGGTGTTGAGATTGGCTTCTCCCTCAAGAAACAAGAAATGA 1315
Query 1319 ATGTTTTGATTGATTTGCTACACAAGGGGATAAAAT 1354
||||||||||||||||||| || || || || ||||
Sbjct 1316 ATGTTTTGATTGATTTGCTTCATAAAGGAATCAAAT 1351
> Ahg947925 jgi|Araly1|947925|scaffold_704154.1
Length=1411
Score = 712 bits (385), Expect = 0.0
Identities = 582/676 (86%), Gaps = 18/676 (3%)
Strand=Plus/Plus
Query 1 ACC-aaaa-aaaTGAATCCATCACTAAACTTCATCCACG-TGTCACGAGTCACGCCATCA 57
||| |||| ||||| | ||||||| ||| ||||| ||| || |||||||||| || |||
Sbjct 10 ACCAAAAAGAAATGGTTTCATCACTTAACATCATCGACGTTG-CACGAGTCACCCCTTCA 68
Query 58 AACTCT-AACTCG-TCGGCGTCACTCACTCTCCCGCTCACTTTCTTTGACCTTCTCTGGC 115
|||||| || ||| || | |||||||||||||| || || ||||| ||||| ||||||
Sbjct 69 AACTCTGAA-TCGACCGAC-TCACTCACTCTCCCACTAACCTTCTTCGACCTCCTCTGGT 126
Query 116 TCAA-ACACAAAGCCGTCGAACGAGTCATCTTCTACAAACTCACCGACGTAAATCGCTCT 174
|||| | | | ||||| ||||||||||||||||||| ||||| ||||| || | |||||
Sbjct 127 TCAAGATTC-ACGCCGTGGAACGAGTCATCTTCTACAGACTCAACGACGCAACTTGCTCT 185
Query 175 TTATTCGACTCAGTCATCGTCCCCAAcctcaaatcctctctctcctcatccctctctcac 234
|| || |||||||||||||||||||| |||||| |||||||||||| |||||||||||||
Sbjct 186 TTCTTTGACTCAGTCATCGTCCCCAATCTCAAAACCTCTCTCTCCTTATCCCTCTCTCAC 245
Query 235 tacctcccactcGCCGGCCATA-TCATCTGGGAACCACATGATCCAAAACCGAA-AATCG 292
|| |||||||||||||| | | || ||||| ||||| ||| || ||||| || || |
Sbjct 246 TATCTCCCACTCGCCGG-AAAACTCGTCTGGAAACCATTTGAACCCAAACC-AAGCATTG 303
Query 293 TCTACACCCAAAACGACGCCGTTTCATTCACCGTAGCTGAGTCAAACTCGGATTTCTCCC 352
| ||||||| |||||||||||||||||||||||| || ||||||||| | ||||||||||
Sbjct 304 TATACACCCCAAACGACGCCGTTTCATTCACCGTCGCCGAGTCAAACGCCGATTTCTCCC 363
Query 353 TTTTAACCGGAAAAGAACCTTTCTCCTCCACCGAGTTACACCCATTAGTCCCGGAGTTAC 412
|||||||||| |||||| |||||||||| |||||| |||||||||||||| |||||||
Sbjct 364 GCTTAACCGGAATAGAACCATTCTCCTCCAACGAGTTGCACCCATTAGTCCCCGAGTTAC 423
Query 413 AAAACTCCGACGACTCAGCAGCAGTCGTGTCGTTTCAAGTCACGTTATTTCCAAACCAAG 472
|||||||||||||||| || | ||| |||| ||||||||||||||||||||||||||||
Sbjct 424 AAAACTCCGACGACTCGGCTTCCGTCATGTCATTTCAAGTCACGTTATTTCCAAACCAAG 483
Query 473 GGTTTTGCATCGGCGTAACCACACACCATGCCGTTTCTGATGGGAAAACGACAACCACGT 532
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 484 GGTTTTGCATCGGCGTAACCGCACACCATGCCGTTTCTGATGGGAAAACGACAACCACTT 543
Query 533 TTCTCAAATCTTGGGCTCACTTATGTAAACATCAAGACTCTTCTCTACCGGATGATCTAA 592
|||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||| |
Sbjct 544 TTCTCAAATCTTGGGCTCACTTCTGTAAACACCAAGATTCTTCTCTACCGGAGGATCTGA 603
Query 593 TTCCGTTTTACGATCGTACGGTCATAAAAGGTCCACCGGAGATTGATACTAAAG-TCTTG 651
||||||||||||||||||||||||||||| ||||||| | | ||||| |||| | |||
Sbjct 604 TTCCGTTTTACGATCGTACGGTCATAAAAAATCCACCGAATAGTGATA-TAAAACTTTTG 662
Query 652 AAAATT-TGGCACTCT 666
|| | |||||||||
Sbjct 663 AAC-TCATGGCACTCT 677
> Ahg494080 jgi|Araly1|494080|fgenesh2_kg.7__3513__AT5G39050.1
Length=1452
Score = 682 bits (369), Expect = 0.0
Identities = 574/672 (85%), Gaps = 18/672 (3%)
Strand=Plus/Plus
Query 1 ACCaaaaaaaTGAATCCATCAC-TAAACTTCATCCACGTGTCACGAGTCACGCCATCAAA 59
|||||| ||||| || |||||| |||| ||||| ||||| ||| |||| | ||||||||
Sbjct 15 ACCAAAGAAATGGATTCATCACTTAAA-ATCATCGACGTGGCACAAGTCCCTCCATCAAA 73
Query 60 CTCTAACTCGTCGGCGTCACTCACTCTCCCGCTCACTTTCTTTGACCTTCTCTGGCT-CA 118
|||| ||||||| | ||||||||||||||| ||||| ||||| ||||| |||||| | |
Sbjct 74 CTCTGACTCGTCCGAGTCACTCACTCTCCCACTCACCTTCTTCGACCTCCTCTGG-TATA 132
Query 119 AAC-ACAAAGCCGTCGAACGAGTCATCTTCTACAAACTCACCGACGTAAATCGCT-CTTT 176
||| | | |||||||||||||||||||||||||||||||| |||| || ||| | ||||
Sbjct 133 AACTTC-ACGCCGTCGAACGAGTCATCTTCTACAAACTCACTGACGCAACTCG-TCCTTT 190
Query 177 ATTCGACTCAGTCATCGTCCCCAAcctcaaatcctctctctcctcatccctctctcacta 236
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 191 CTTCGACTCAGTCATCGTCCCCAACCTCAAAACCTCTCTCTCCTCCTCCCTCTCTCACTA 250
Query 237 cctcccactcGCCGGCCATA-TCATCTGGGAACCACATGATCCAAAACCGAAAATCGTCT 295
||||||||||||||| | | || |||||||||||| |||||| ||||| |||||| |||
Sbjct 251 CCTCCCACTCGCCGG-AAAACTCGTCTGGGAACCACTTGATCCCAAACCAAAAATCATCT 309
Query 296 ACACCCAAAACGACGCCGTTTCATTCACCGTAGCTGAGTCAAACTCGGATTTCTCCCTTT 355
|||||| |||||||||||||||||||||||| || ||||||||| | || ||||| | ||
Sbjct 310 ACACCCCAAACGACGCCGTTTCATTCACCGTCGCCGAGTCAAACGCCGACTTCTCACGTT 369
Query 356 TAACCGGAAAAGAACCTTTCTCCTCCACCGAGTTACACCCATTAGTCCCGGAGTTACAAA 415
|| |||| || ||||| | | || || |||||||| |||| |||||||| |||||||||
Sbjct 370 TATCCGGCAACGAACCATACCCCACCGCCGAGTTATACCCGTTAGTCCCCGAGTTACAAG 429
Query 416 ACTCCGACGACTCAGCAGCAGTCGTGTCGTTTCAAGTCACGTTATTTCCAAACCAAGGGT 475
||||| |||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 430 TTTCCGATGACTCAGCCTCCGCCGTGTCGTTTCAAGTCACGTTATTTCCAAACCAAGGGT 489
Query 476 TTTGCATCGGCGT-AACCACACACCATGCCGTTTCT-GATGGGAAAACGACAACCACGTT 533
|||||||| |||| ||| |||| |||||||||| | ||||| ||||||||||||| |||
Sbjct 490 TTTGCATCTGCGTTAACG-CACATCATGCCGTTT-TAGATGGAAAAACGACAACCATGTT 547
Query 534 TCTCAAATCTTGGGCTCACTTATGTAAACATCAAGACTCTTCTCTACCGGATGATCTAAT 593
||||||||||||||| ||| ||||||| ||||||| |||||||||||||| ||||| ||
Sbjct 548 TCTCAAATCTTGGGCACACACATGTAAAAATCAAGATTCTTCTCTACCGGACGATCTTAT 607
Query 594 TCCGTTTTACGATCGTACGGTCATAAAAGGTCCACCGGAGATT-GATACTAAAGTCTTGA 652
|| |||||||||||||||||||||||| |||| |||| || ||||| |||||||| |
Sbjct 608 CCCAATTTACGATCGTACGGTCATAAAAGATCCAACGGAT-TTAGATACAAAAGTCTT-A 665
Query 653 AAAT-TTGGCAC 663
|| |||||||
Sbjct 666 AACGCTTGGCAC 677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56678284560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5