BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39210.1
Length=686
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947915 jgi|Araly1|947915|scaffold_704144.1 769 0.0
> Ahg947915 jgi|Araly1|947915|scaffold_704144.1
Length=515
Score = 769 bits (416), Expect = 0.0
Identities = 482/513 (94%), Gaps = 7/513 (1%)
Strand=Plus/Plus
Query 93 ATTTTTCAAGATATCAAAATGGAGTGTTCGCTGCAGAAACAGCTTTTCAACAACGGAGAT 152
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 4 ATTTTTCAAGATATCAAAATGGAGTATTCGCTGCAGCAACAGCTTTTCAACAACGGAGAT 63
Query 153 AAGCTCTTTAGTTCTCGACATAACCGACGGGTTTCGATAGAACAAGTCCATGTGACAGAT 212
||||||||||||||||||||||||| || ||||||||| |||||| | ||||| ||||||
Sbjct 64 AAGCTCTTTAGTTCTCGACATAACCAACAGGTTTCGATGGAACAATTTCATGTAACAGAT 123
Query 213 TCTCTT-TCCGTAAACTCGATAAACCTGTTTCATAAACCTATATGTTATCCAATATCATC 271
|||||| || | ||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct 124 TCTCTTCTC-GCAAACTCGATAAACCTGTTTCATAAACCTATAAGTTCTCCAATATTGTC 182
Query 272 CATCATCACTTCAAGAAAGAGCAAAAGCCATTTTAGTGTTTGTGCAACAAGGAGAAGAAG 331
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 183 CATCATCACTTCAAGAAAGAGCAAAAGCCATTTTAGAGTTTGTGCAACAAGGAGAAGAAG 242
Query 332 GGTGCATT---CGAACTCGGATACATACGTACTGTTAGAGGCAGGACAAGATGAGCAGTT 388
|||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 243 GGTGCATTATTCGAACTCGGATACGTACGTACTGTTAGAGGCAGGACAAGACGAGCAGTT 302
Query 389 TGTGACGGAAGACGAACTCAAGGCTAAGCTCAGAGGGTGGCTCGAAAATTGGCCGGTGAA 448
|||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 303 TGTGTCGGAAGACGAACTCAAGGCTAAGCTCAAAGGGTGGCTCGAGAATTGGCCGGTGAA 362
Query 449 CTCTTTGCCACCAGACCTGGCTAGGTTCGATGACCTTGATGAAGCCGTAGATTTCTTGGT 508
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 363 CTCTTTGCCACCAGACCTGGCTAGGTTCAATGACCTTGATGAAGCCGTCGATTTCTTGGT 422
Query 509 TAAAGCTGTATGTGAACTAGAAATTGATGGAGAAGTGGGTTCTGTTCAATGGTACCAAGT 568
|||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct 423 TAAAGCTGTATGTGAACTTGAAATTCATGGAGAAGTAGGTTCTGTTCAATGGTACCAAGT 482
Query 569 TCGTCTTGAGTAATTAAATAAA-CGTATTATGT 600
|||||||||||||||||| ||| ||||||||||
Sbjct 483 TCGTCTTGAGTAATTAAA-AAATCGTATTATGT 514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25199248137
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5