BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39530.1
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947862 jgi|Araly1|947862|scaffold_704091.1 1175 0.0
Ahg947863 jgi|Araly1|947863|scaffold_704092.1 573 1e-162
> Ahg947862 jgi|Araly1|947862|scaffold_704091.1
Length=769
Score = 1175 bits (636), Expect = 0.0
Identities = 714/752 (95%), Gaps = 3/752 (0%)
Strand=Plus/Plus
Query 499 TCTGATATCTGAGAGAGATAATGGGAGAAATGACGGCGAGGTCTTCGGTTTTATCGTCGG 558
|||||| | ||||| |||||||| |||||||||| ||||||||| |||||||||||||||
Sbjct 1 TCTGATCTTTGAGATAGATAATGAGAGAAATGACAGCGAGGTCTGCGGTTTTATCGTCGG 60
Query 559 GGATGTTCAGAAGTTACCACCGGCCGGTGACGACGGAGGTGAGATCACTATTACGGTCGA 618
||||||||||| |||||||||||||||||| |||||||||||||||| || ||||||| |
Sbjct 61 GGATGTTCAGAGGTTACCACCGGCCGGTGAAGACGGAGGTGAGATCAATAATACGGTCTA 120
Query 619 GAGTGATGTGCCAAGTGTCATCCGTAAAACCCGCCACGTATTCATCGAGACTCTCCACAG 678
|||||| |||||||||||| ||||||||||||||||| |||||||| | |||||||||||
Sbjct 121 GAGTGAAGTGCCAAGTGTCTTCCGTAAAACCCGCCACATATTCATCAAAACTCTCCACAG 180
Query 679 ATATTCCTCTCAACGAGTCTCCTCAGGCTTTGTTCGATGAGTATTTAGAGGATAAATCAA 738
||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 181 ATATTCCTCTCCACGAGTCTCCTCAGGCTTTGTTCGATGAGTATTTGGAAGATAAATCAA 240
Query 739 GAGTATTCGAAGCAATGTTTCCAGATAAGCCCAGAAGTCATAGGCTTAACGAGGAAGAAT 798
|| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 241 GATTATTCGAAGCAATGTTTCCAGATAAACCCAGAAGTTATAGGCTTAACGAGGAAGAAT 300
Query 799 GGAGAATTCAGATGTTACCAATAAACTTCCTCTTCCTTACTGTGTGGCCTGTGGTAGATA 858
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 301 GGAGAATTCAGATGTTACCAATAAACTTCCTCTTCCTTACTGTGTGGCCGGTGGTAGATA 360
Query 859 TGAGGTTAAGATGCAAATCCAACGGTCAAGATTATCCGCCAGATGTACCTTTAGATATAA 918
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGCGGTTAAGATGCAAATCCAACGGTCAAGATTATCCGCCAGATGTACCTTTAGATATAA 420
Query 919 CCAAAGTTCTTGAGCTCAACATGATGAGATGGAAGCTTCAAGGGCTTGACCGAGTAATGG 978
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 421 CCAAAGTTCTTGAGCTCAACATGATGAGATGGAAGCTTAAAGGGCTTGATCGAGTAATGG 480
Query 979 AACCAG-CTGATTTCAGTTTGGAAGTCAAAGGAGCATTGTACCCTGACCGAAGAGGAAAG 1037
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AACC-GTCTGATTTCAGTTTGGAAGTCAAAGGAGCATTGTACCCTGACCGAAGAGGAAAG 539
Query 1038 CACACAAGGCTCAGAGGTCAACTAGAGATGAACATAAGCTTTGTTCTTCCTCCGGTTCTT 1097
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 540 CAAACAAGGCTCAGAGGTCAACTAGAGATGAACATAAGCTTTGTGCTTCCTCCGGTTCTT 599
Query 1098 GAGTTGGTACCTGAAGATGTTCGAAGAAACTTGGCCAATGCGGTTTTGACCGGTTTAGTG 1157
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 600 GAGTTAGTACCTGAAGATGTTCGGAGAAACTTGGCCAATGCGGTTTTGACCGGTTTAGTG 659
Query 1158 GAGAATATGAAGCATAAGGTTAATGGGAGCTTGCTTTCTGATTATAGCAGGTTCAAGAAT 1217
|| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 660 GAAAACATGAAGCATAAGGTTAATGGGAGCTTGCTTGCTGATTATAGCAGGTTCAAGAAT 719
Query 1218 GAAAGAAAATTACAAAGA-TAATCGAGTAAAC 1248
|||||||| ||||||| | |||||||||||||
Sbjct 720 GAAAGAAAGTTACAAAAAGTAATCGAGTAAAC 751
> Ahg947863 jgi|Araly1|947863|scaffold_704092.1
Length=736
Score = 573 bits (310), Expect = 1e-162
Identities = 533/639 (83%), Gaps = 21/639 (3%)
Strand=Plus/Plus
Query 597 GTGAGATCACTATTACGGTCGAGAGTGATGTGCCAAG-TGTCATCC-GTAAAACCCGCCA 654
||||||||| | ||||| |||||||| ||| | || ||||| || |||||||| ||||
Sbjct 78 GTGAGATCA--A-AACGGTGGAGAGTGAAGTGTC-AGTTGTCA-CCTGTAAAACCGGCCA 132
Query 655 CGTATTCATCGAGACTCTCCACAGATATTC-CTCTCAACGAGTCTCCTCAGGCTTTGTTC 713
||||| || | | | || || |||| || ||||| |||||||||||||||||||||||
Sbjct 133 AATATTCCTCTAAAATATCAACCGATA-TCGCTCTCCACGAGTCTCCTCAGGCTTTGTTC 191
Query 714 GATGAGTATTTAGAGGATAAATCAAGAGTATTCGAAGCAATGTTTCCAGATAAGCCCAGA 773
||||||||||||||||| ||||| || || ||||||||||||||||| ||||| |||| |
Sbjct 192 GATGAGTATTTAGAGGACAAATCGAGGGTTTTCGAAGCAATGTTTCCGGATAAACCCAAA 251
Query 774 AGTCATAGGCTTAACGAGGAAGAATGGAGAATTCAGATGTTACCAATAAACTTCCTCTTC 833
| ||||||||||| ||||||||||||||||| || |||||||||||||| || |||||
Sbjct 252 AACCATAGGCTTAATGAGGAAGAATGGAGAATCCAAATGTTACCAATAAAATTTTTCTTC 311
Query 834 CTTACTGTGTGGCCTGTGGTAGATATGAGG-TTAAGATGCAAATCCAACGGTCAAGATTA 892
| |||| |||||| ||||| | |||| || ||| |||||||||||||||| || |||||
Sbjct 312 ATCACTGCGTGGCCAGTGGTGGTTATGCGGATTA-GATGCAAATCCAACGGCCAGGATTA 370
Query 893 TCCG-CCAGATGTACCTTTAGATATAACCAAAGTTCTTGAGCTCAACATGATGAGATGGA 951
|| || || |||||| || | | |||||||||||||||||||||||||| || ||||
Sbjct 371 CCCATCC-GACGTACCTCTACACACAACCAAAGTTCTTGAGCTCAACATGACGAAATGGG 429
Query 952 AGCTTCAAGGGCTTGACCGAGTAATGGAACCAGCTGATTTCAGTTT-GGAAGTCAAAGGA 1010
|||||||||||||||||||||||||||||||| ||||||||| | | ||| |||||||||
Sbjct 430 AGCTTCAAGGGCTTGACCGAGTAATGGAACCATCTGATTTCACTCTCGGA-GTCAAAGGA 488
Query 1011 GCATTGTACCCTGACCGAAGAGGAA-AGCACACAAGGCTCAGAGGTCAACTAGAGATGAA 1069
||||||||||| |||||| | |||| | || |||||||||| ||||| |||||| | ||
Sbjct 489 GCATTGTACCCAGACCGACGTGGAAGA-CAAACAAGGCTCAAAGGTCGACTAGAAACGAG 547
Query 1070 CATAAGCTTTGTTCTTCCTCCGGTTCTTG-AGTTGGTACCTGAAGATGTTCGAAGAAACT 1128
||| ||||| || |||||| | ||||| | | ||| |||| ||||||||| | ||||||
Sbjct 548 CATTAGCTTCGTGCTTCCTTCAGTTCTCGCACTTG-TACCAGAAGATGTTAGGAGAAACA 606
Query 1129 TGGCCAATGCGGTTTTGACCGGTTTAGTGGAGAATATGAAGCATAAGGTTAATGGGAGCT 1188
||||||||||| ||||| || |||| ||||||| |||||||||||||||| || |||||
Sbjct 607 TGGCCAATGCGATTTTGGCCAGTTTGGTGGAGAGCATGAAGCATAAGGTTATTGAGAGCT 666
Query 1189 TGCTTTCTGATTATAGCAGGTTCAAGA-ATGAAAGAAAA 1226
|| | |||||||||||| ||||| | |||||||||||
Sbjct 667 TGGTCGCTGATTATAGCAAATTCAA-ATATGAAAGAAAA 704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53631064960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5