BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G39570.1 Length=1559 Score E Sequences producing significant alignments: (Bits) Value Ahg891774 jgi|Araly1|891774|Al_scaffold_0007_3760 1101 0.0 > Ahg891774 jgi|Araly1|891774|Al_scaffold_0007_3760 Length=1155 Score = 1101 bits (596), Expect = 0.0 Identities = 718/773 (93%), Gaps = 23/773 (3%) Strand=Plus/Plus Query 437 ATCTGGCTATGGTGGACAAACGGAGGTGGAGTATGGTCGGAGACCTGAGCAGAGTTATGG 496 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 405 ATCTGGATACGGTGGACAAACGGAGGTGGAGTATGGTCGGAGACCTGAGCAGAGTTATGG 464 Query 497 ATCTGGTTATGGTGGAAGGACGGAGACTGAATCGGAGTATGGATCTGGTGGTGGTGGAAG 556 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 465 ATCTGGTTATGGTGGAAGGACGGAGACTGAATCGGAGTATGGATCTGGTGGTGGTGGAAG 524 Query 557 AACTGAGGTTGAGTATGGTAGGAGACCTGAATCAGGGCTTGGATCTGGTTATGGTGGGAG 616 ||||||||||||||||||| ||||||||| | |||||||||||||||||| Sbjct 525 AACTGAGGTTGAGTATGGTCGGAGACCTG----A--------ATCTGGTTATGGTGGGAG 572 Query 617 ATCGGAGTCTGAGTATGAGCGTAAGCCTAGCTATGGAAGGTCTGAGGAACAAGAAGAAGG 676 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 573 ATCGGAGACTGAGTATGAGCGTAAGCCTAGCTATGGAAGGTCTGAGGAACAAGAAGAAGG 632 Query 677 TTATAGGAAGCCTAGCTATGGAAGATCTGAAGAACAAGAGGAAGGTTACAGGAAGCCAAG 736 |||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| || Sbjct 633 TTATAGAAAGCCTAGCTATGGAAGATCTGAGGAACAAGAGGAAGGTTATAGGAAGCCTAG 692 Query 737 TTATGGAAGATCTGAGGAGCAGGAAGAAGGATATAGAAAGCCTAGCTATGGAAGATCTGA 796 |||||||||||||| || || || ||||| ||||| ||||| || |||||||||||| Sbjct 693 CTATGGAAGATCTGAAGAACAAGAGGAAGGTTATAGGAAGCCAAGTTATGGAAGATCT-- 750 Query 797 GGAGGAACAAGAGGAAGGTTATAGGAAGCCTAGCTATGGAAGATCTGAGGAACAAGAGGA 856 |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 751 -GAGGAAGAAGAGGAAGGTTATAGGAAGCCTAGCTATGGAAGATCTGAGG---AAGAGGA 806 Query 857 AGGAAGTTACAGGAAACCTAGTTATGGGAGGTCTGATGATCAGGTGGAGAGTTACATTAA 916 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 807 AGGAAGTTACAGGAAACCTAGTTATGGGAGGTCTGAGGATCAGGTGGAGAGTTACATTAA 866 Query 917 GCCTAGCTATGGAAGATCTGAGGAACAGGAGGAGGGAAGTTACAGGAAGCCTAGTTATGG 976 ||||||||||||||| |||||||| |||||||| |||||||| ||||||||||| ||||| Sbjct 867 GCCTAGCTATGGAAGGTCTGAGGATCAGGAGGAAGGAAGTTATAGGAAGCCTAGCTATGG 926 Query 977 GAGGTCTGAGGAACAGGAAGAGGGGAGTTACAGGAAGCAGCCTAGCTATGGCCGTGGCAA 1036 |||||||||||| ||||||||||||||| ||||| | |||||||||||||||||||||| Sbjct 927 GAGGTCTGAGGAGCAGGAAGAGGGGAGTCACAGG-A--AGCCTAGCTATGGCCGTGGCAA 983 Query 1037 TGACGATGATGATGATGAGCAGCGTAGGAACCGTTCTGGTTCTGGTGATGATGAGGAAGG 1096 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 984 TGACGATGATGATGATGAGCAGCGTAGGAACCGTTCTGGTTCTGGTGATGATGAGGAAGG 1043 Query 1097 GAGCTATGGCCGCAAGAAATATGGTGGCAATGACTCTGATGAGGATGAGGAGAAGAAGAA 1156 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1044 GAGCTATGGCCGCAAGAAATATGGTGACAATGACTCTGATGAGGATGAGGAGAAGAAGAA 1103 Query 1157 GCACCGTCACAAGCATCACCACCAGA-AGCGTCGTGACGAAGACGATGAGTAA 1208 ||||||| ||||||| | |||||||| | |||||||| ||||||||||| ||| Sbjct 1104 GCACCGTTACAAGCAGCGCCACCAGAGA-CGTCGTGATGAAGACGATGACTAA 1155 Score = 610 bits (330), Expect = 1e-173 Identities = 377/400 (94%), Gaps = 2/400 (1%) Strand=Plus/Plus Query 63 ATGCCGTACTATACCAGAGATGACA-ACGACGTCGACGATTTCGATGAGTTTGATCCAAC 121 ||||||||||| |||||||| || | |||| ||||||||||| ||||||||||||||||| Sbjct 1 ATGCCGTACTACACCAGAGACGA-AGACGATGTCGACGATTTTGATGAGTTTGATCCAAC 59 Query 122 GCCGTACAGTGGTGGTTACGACATCACGGTGATCTACGGCCGTCCGATTCCACCTTCCGA 181 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 60 GCCGTACAGTGGTGGTTACGACATCACGGTGATTTACGGCCGTCCGATTCCACCTTCCGA 119 Query 182 TGAGACTTGTTATCCTCTCTCATCTGGTGTCGATGATGATTTCGAATACGAGAGACCTGA 241 |||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 120 TGAGACTTGTCACCCTCTCTCATCTGGCGTCGATGATGATTTCGAATACGAGAGACCTGA 179 Query 242 ATTTACTCAGATCCATGAGCCTTCTGCTTACGGTGATGAAGCTCTTAACACAGAGTACAG 301 |||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| Sbjct 180 ATTTACTCAGATCCATGAACCTTCTGCTTATGGAGATGAAGCTCTTAACACAGAGTACAG 239 Query 302 TAGCTATTCTCGACCCAAGCCACGACCCGCATTTCGACCCGATTCAGGTGGTGGTGGTCA 361 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TAGCTACTCTCGACCCAAGCCACGACCCGCATTTCGACCCGATTCAGGTGGTGGTGGTCA 299 Query 362 TGTTCAAGGTGAAAGACCAAATCCTGGTTATGGATCTGAATCCGGTTATGGGAGGAAACC 421 ||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct 300 TGTTCAAGGCGAAAGACCAAATCCTGGTTATGGATCTGGATCCGGTTATGGGAGAAAACC 359 Query 422 GGAATCTGAGTACGGATCTGGCTATGGTGGACAAACGGAG 461 |||||| ||||| ||||| || |||||||| || |||||| Sbjct 360 GGAATCGGAGTATGGATCCGGTTATGGTGGTCAGACGGAG 399 Score = 366 bits (198), Expect = 2e-100 Identities = 296/342 (87%), Gaps = 11/342 (3%) Strand=Plus/Plus Query 639 AAGCCTAGCTATGGAAGGTCTGAGGAACAAGAAGAAGGTTATAGGAAGCCTAGCTATGGA 698 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 640 AAGCCTAGCTATGGAAGATCTGAGGAACAAGAGGAAGGTTATAGGAAGCCTAGCTATGGA 699 Query 699 AGATCTGAAGAACAAGAGGAAGGTTACAGGAAGCCAAGTTATGGAAGATCTGAGGA-GCA 757 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | | Sbjct 700 AGATCTGAAGAACAAGAGGAAGGTTATAGGAAGCCAAGTTATGGAAGATCTGAGGAAGAA 759 Query 758 GGAAGAAGGATATAGAAAGCCTAGCTATGGAAGATCTGAGGAGGAACAAGAGGAAGGTTA 817 | | ||||| ||||| |||||||||||||||||||||||||| || ||| | ||| ||| Sbjct 760 G-AGGAAGGTTATAGGAAGCCTAGCTATGGAAGATCTGAGGAAGAGGAAG-G-AAG-TTA 815 Query 818 TAGGAAGCCTAGCTATGGAAGATCTGAGGAACAAGAGGAAGGAAGTTACAGGAAACCTAG 877 ||||| ||||| ||||| || |||||||| || | ||| | | |||||| || ||||| Sbjct 816 CAGGAAACCTAGTTATGGGAGGTCTGAGGATCAGGTGGA-G-A-GTTACATTAAGCCTAG 872 Query 878 TTATGGGAGGTCTGATGATCAGGTGGA-G-A-GTTACATTAAGCCTAGCTATGGAAGATC 934 ||||| |||||||| ||||||| ||| | | |||| | |||||||||||||| || || Sbjct 873 CTATGGAAGGTCTGAGGATCAGGAGGAAGGAAGTTATAGGAAGCCTAGCTATGGGAGGTC 932 Query 935 TGAGGAACAGGAGGAGGGAAGTTACAGGAAGCCTAGTTATGG 976 |||||| ||||| ||||| ||| ||||||||||||| ||||| Sbjct 933 TGAGGAGCAGGAAGAGGGGAGTCACAGGAAGCCTAGCTATGG 974 Score = 294 bits (159), Expect = 1e-78 Identities = 256/300 (85%), Gaps = 17/300 (6%) Strand=Plus/Plus Query 729 AAGCCAAGTTATGGAAGATCTGAGGAGCAGGAAGAAGGATATAGAAAGCCTAGCTATGGA 788 ||||| || |||||||| |||||||| || |||||||| ||||||||||||||||||||| Sbjct 595 AAGCCTAGCTATGGAAGGTCTGAGGAACAAGAAGAAGGTTATAGAAAGCCTAGCTATGGA 654 Query 789 AGATCTGAGGAGGAACAAGAGGAAGGTTATAGGAAGCCTAGCTATGGAAGATCTGAGGAA 848 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 655 AGATCT---GAGGAACAAGAGGAAGGTTATAGGAAGCCTAGCTATGGAAGATCTGAAGAA 711 Query 849 CAAGAGGAAGGAAGTTACAGGAAACCTAGTTATGGGAGGTCTGATGATCAGGTGGAGAG- 907 ||||||||||| ||| ||||| || |||||||| || ||||| || | | ||| || Sbjct 712 CAAGAGGAAGG---TTATAGGAAGCCAAGTTATGGAAGATCTGAGGAAGAAGAGGA-AGG 767 Query 908 TTACATTAAGCCTAGCTATGGAAGATCTGAGGAACAGGAGGAGGGAAGTTACAGGAAGCC 967 ||| | ||||||||||||||||||||||||||| |||| ||| |||||||||||| || Sbjct 768 TTATAGGAAGCCTAGCTATGGAAGATCTGAGGAAGAGGA--AGG-AAGTTACAGGAAACC 824 Query 968 TAGTTATGGGAGGTCTGAGGAACAGGAAGAGGGGAGTTACAGGAAGCAGCCTAGCTATGG 1027 ||||||||||||||||||||| |||| ||| ||||||| |||| | ||||||||| Sbjct 825 TAGTTATGGGAGGTCTGAGGATCAGGTGGAG---AGTTACATTAAGC--C-TAGCTATGG 878 Score = 226 bits (122), Expect = 4e-58 Identities = 207/248 (83%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 639 AAGCCTAGCTATGGAAGGTCTGAGGAACAAGAAGAAGGTTATAGGAAGCCTAGCTATGGA 698 ||||| || |||||||| ||||||||| |||| ||||||||||||||||||||||||||| Sbjct 730 AAGCCAAGTTATGGAAGATCTGAGGAAGAAGAGGAAGGTTATAGGAAGCCTAGCTATGGA 789 Query 699 AGATCTGAAGAACAAGA-GGAAGGTTACAGGAAGCCAAGTTATGGAAGATCTGAGGAGCA 757 |||||||| ||| | || ||||| ||||||||| || |||||||| || |||||||| || Sbjct 790 AGATCTGAGGAAGAGGAAGGAAG-TTACAGGAAACCTAGTTATGGGAGGTCTGAGGATCA 848 Query 758 GGAAGA-AGGATATAGAAAGCCTAGCTATGGAAGATCTGAGGAGGAACAAGA-GGAAGGT 815 || || || || | ||||||||||||||||| |||||||| | | || ||||| | Sbjct 849 GGTGGAGAGT-TACATTAAGCCTAGCTATGGAAGGTCTGAGGATCAGGAGGAAGGAAG-T 906 Query 816 TATAGGAAGCCTAGCTATGGAAGATCTGAGGAACAAGAGGAAGGAAGTTACAGGAAACCT 875 |||||||||||||||||||| || |||||||| || || || || ||| ||||||| ||| Sbjct 907 TATAGGAAGCCTAGCTATGGGAGGTCTGAGGAGCAGGAAGAGGGGAGTCACAGGAAGCCT 966 Query 876 AGTTATGG 883 || ||||| Sbjct 967 AGCTATGG 974 Score = 211 bits (114), Expect = 1e-53 Identities = 211/255 (83%), Gaps = 17/255 (7%) Strand=Plus/Plus Query 774 AAGCCTAGCTATGGAAGATCTGAGGAGGAACAAGAGGAAGGTTATAGGAAGCCTAGCTAT 833 ||||||||||||||||| ||| ||||||||||| ||||||||||| |||||||||||| Sbjct 595 AAGCCTAGCTATGGAAGGTCT---GAGGAACAAGAAGAAGGTTATAGAAAGCCTAGCTAT 651 Query 834 GGAAGATCTGAGGAACAAGAGGAAGGAAGTTACAGGAAACCTAGTTATGGGAGGTCTGAT 893 |||||||||||||||||||||||||| ||| ||||| ||||| ||||| || ||||| Sbjct 652 GGAAGATCTGAGGAACAAGAGGAAGG---TTATAGGAAGCCTAGCTATGGAAGATCTGAA 708 Query 894 GATCAGGTGGAGAG-TTACATTAAGCCTAGCTATGGAAGATCTGAGGAACAGGAGGAGGG 952 || || | ||| || ||| | ||||| || |||||||||||||||||| | ||||| || Sbjct 709 GAACAAGAGGA-AGGTTATAGGAAGCCAAGTTATGGAAGATCTGAGGAAGAAGAGGAAGG 767 Query 953 AAGTTACAGGAAGCCTAGTTATGGGAGGTCTGAGGAACAGGAAGAGGGGAGTTACAGGAA 1012 ||| ||||||||||| ||||| || ||||||||| |||||| | ||||||||||| Sbjct 768 ---TTATAGGAAGCCTAGCTATGGAAGATCTGAGGAAGAGGAAG-GA--AGTTACAGGAA 821 Query 1013 GCAGCCTAGCTATGG 1027 | ||||| ||||| Sbjct 822 --A-CCTAGTTATGG 833 Score = 97.1 bits (52), Expect = 3e-19 Identities = 114/143 (80%), Gaps = 8/143 (6%) Strand=Plus/Plus Query 873 CCTAGTTATGGGAGGTCTGATGATC-AGGTGGAGAGTTACATTAAGCCTAGCTATGGAAG 931 ||||| ||||| |||||||| || | || | || |||| | ||||||||||||||||| Sbjct 598 CCTAGCTATGGAAGGTCTGAGGAACAAGAAGAAG-GTTATAGAAAGCCTAGCTATGGAAG 656 Query 932 ATCTGAGGAACAGGAGGAGGGAAGTTACAGGAAGCCTAGTTATGGGAGGTCTGAGGAACA 991 |||||||||||| ||||| || ||| ||||||||||| ||||| || ||||| ||||| Sbjct 657 ATCTGAGGAACAAGAGGAAGG---TTATAGGAAGCCTAGCTATGGAAGATCTGAAGAACA 713 Query 992 GGAAGAGGGGAGTTACAGGAAGC 1014 || || || ||| ||||||| Sbjct 714 AGAGGAAGG---TTATAGGAAGC 733 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58392345585 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5