BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G39590.1 Length=1942 Score E Sequences producing significant alignments: (Bits) Value Ahg494030 jgi|Araly1|494030|fgenesh2_kg.7__3463__AT5G39590.1 2876 0.0 > Ahg494030 jgi|Araly1|494030|fgenesh2_kg.7__3463__AT5G39590.1 Length=1901 Score = 2876 bits (1557), Expect = 0.0 Identities = 1805/1922 (94%), Gaps = 27/1922 (1%) Strand=Plus/Plus Query 10 ATTTCTAATCATGGACTCCAATTTCTCTGATCATTCCCTCTAATTTCGGATTTTTGCATC 69 ||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct 1 ATTTCCAATCATGGACTCCAATTTCTCTGATTATTCCCTCTAATTTCGAATTTTTGCATC 60 Query 70 TTCTCCGATCATCTTCACCACTATGGGTGCTTCATCTTCTACAGACGACAAAGAATCATC 129 ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 61 TTCTCCGATCATCTTCACCACTATGGGTGCTTCATCTTCAACAGACAACAAAGAATCATC 120 Query 130 GGAGAAACGAGAAATCGAAAGCCTTGCTGCTTCAACCGGAGCTCTTCCTCTGCTTAAACG 189 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 121 GGAGAAACGAGAAATCGAAAGCCTTGCTGCTTCAACCGGAGCTCTTCCTCTGCTTCAACG 180 Query 190 ATCCTTCTCCAAACTCGT-CGATTCTCAAACCAATACTGTTCCTTTTCAATCCTTGAAGC 248 ||| ||||||||||| | |||||||||||||||||||||||||||||||||||| |||| Sbjct 181 ATCTTTCTCCAAACT-TTCCGATTCTCAAACCAATACTGTTCCTTTTCAATCCTTCAAGC 239 Query 249 AAAGTTTTGGTTTGAGCTACGATACAATTACTACTGAAGGAGAG-CAAAAAGTTTCAGAC 307 ||||||||||||||||||||||| |||||||||||||||||| | ||||||||| |||| Sbjct 240 AAAGTTTTGGTTTGAGCTACGATTCAATTACTACTGAAGGAG-GTCAAAAAGTTGGAGAC 298 Query 308 TTGTTTCCCAAATTGTTGGAGCATTTAGGATCATCTTTAGTAGATTTGTTCTTCGTGCCT 367 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 TTGTTTCCCAGATTGTTGGAGCATTTAGGATCATCTTTAGTAGATTTGTTCTTCGTGCCT 358 Query 368 GATAAAGAAGGATTGAGTTGGGTTGAGTTTGCTAGTGGTTATGTCAAATGTTGTGGAAGA 427 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 359 GATAAAGAAGGATTGAGTTGGGTTGAGTTTGCTAGAGGTTATGTCAAATGTTGTGGAAGA 418 Query 428 ATGTCGAATTCGATGTCTTTCAACACTTTGTTGAGAGTTTACTATGTGACAGCTAAAAAT 487 |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 419 ATGTCGGCTTCGATGTCTTTCAACACTTTGTTGAGAGTTTATTATGTGACAGCTAAAAAT 478 Query 488 GCAGGCTTTTCTCCAAAGCTTGAGTTTGAATCTGATGAAGCTGATTGTAAGATTAACGGG 547 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 479 GCAGGCTTTTCTCCAAAGCTTGAGTTTGAATCTGATGAAGCTGATTGTAAAATTAACGGG 538 Query 548 TCGATTTCGGTTAGTGAATTGCTTGTGTTTCTTTGGATGTGTTGGACAATGTCTTGGGAT 607 ||||||||| |||| ||||||||||||||||| ||||| |||||||||||||| |||||| Sbjct 539 TCGATTTCGATTAGAGAATTGCTTGTGTTTCTGTGGATTTGTTGGACAATGTCGTGGGAT 598 Query 608 GGTCGAAGCTCTAAAGCTGCTGAAATGAAAGGG-TGTTTGTTTCTTCCGGATATTAGTCA 666 |||||||| |||||||| ||||||||| ||||| |||||||||||||||||||| ||||| Sbjct 599 GGTCGAAGTTCTAAAGCCGCTGAAATG-AAGGGTTGTTTGTTTCTTCCGGATATAAGTCA 657 Query 667 TTTGATTCTATCAGCAGTGGTGTCTTGCACTGATTCTGAATCTGGAAATAGTTTGGATGT 726 |||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| Sbjct 658 TTTGATTCTATCAGCAGTTGTGGCTTGCACTGATTCTGAATCTGGAAAGAGTTTGGATGT 717 Query 727 TTGGGAGACTGATGTTTCTGGTTTAGAACTTGAACTTCCTATCGGGAAATTCTTAACGTG 786 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 718 TTGGGAGACTGATGTTTCTGGATTAGAACTCGAACTTCCTATCGGGAAATTCTTAACGTG 777 Query 787 GGCTTTGATGACAGTTCCTTGCCTCACTGAGTGCCTTTCTCACTTTTGTAACTCGAGGCT 846 ||| ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| || Sbjct 778 GGCGTTGATGACAGTGCCTAGCCTCACTGAGTGCCTTTCTCACTTTTGTAATTCGAGACT 837 Query 847 TCAAAATGTGACAAGTGCAGAGGATGGATCTGGACCTTCAAAGTCCACTGCTGTAGATGA 906 ||||||| ||||||||| |||||||| ||||||||||| |||||||||||||||||||| Sbjct 838 TCAAAATTTGACAAGTGTTGAGGATGGTTCTGGACCTTCGAAGTCCACTGCTGTAGATGA 897 Query 907 TTCTGCGTCCAAGACAAGCGAAAACACCCTTCTAACATGTGGAAGGGCATGGGCGATTTC 966 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 898 TTCTGCGTCCAAGACAAGCGAAAACACCCTTCTAACATGTGGAAGGGCATGGGCAATTTC 957 Query 967 TTTGACGAGCAAAAGTACAATAAGCGAGGAGATTTTGAGCTCATGTTTTCCCGGCAATAG 1026 ||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| Sbjct 958 TTTGACGAGCAAAAGTATAATAAGCGAGGAGATTTTGAGCTCATGCTTTCCCTGCAATAG 1017 Query 1027 CGGTG-AACCAAATGAACATCTTCTATACCGCTCATATTATCACGGGAAAGGCATGAATC 1085 | || |||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1018 CAATGAAACC-AATGAACATCTTCTATACCGCTCATACCATCACGGGAAAGGCATGAATC 1076 Query 1086 GACTGTGGTCCAACGTTGAAGGGTATCATGCTCCTATACTAGTGATAATTTCTGCAAGTT 1145 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 1077 GACTGTGGTCCAACGTTGAAGGGTATCATGCTCCGATACTAGTGATAATTTCTGCAAGCT 1136 Query 1146 GTAAAGTCGAACATGAGGCTACTTCAAGCGAGAGGAAGTGGGTCATTGGTGCAATCTTGC 1205 || ||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| Sbjct 1137 GTGAAGTCGAACATGAGGGTACTTCAAGCAAGAGGAAGTGGGTTATTGGTGCAATCTTGC 1196 Query 1206 AGCAAGGTTTTGAGAACAGAGATGCATTTTATGGAAGCTCTGGGAACTTGTTCTCCATAA 1265 |||| |||||||| ||||| || ||||||||||||||||||||||| ||||||||||| | Sbjct 1197 AGCATGGTTTTGAAAACAGGGACGCATTTTATGGAAGCTCTGGGAATTTGTTCTCCATTA 1256 Query 1266 GTCCAGTCTTTCACGCATTCTCATCTTCTGGTAAGGAGAAAAACTTTGCGTATAGCCATC 1325 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1257 GTCCAGTCTTTCACGCATTCTCATCTTCTGGCAAGGAGAAAAACTTTGCGTATAGCCATC 1316 Query 1326 TGCA-CCCTGCTGGCGGAGTGTACGACGCACATCCCAAGCCTGTTGGAATTGGATTCGGG 1384 |||| |||| |||| ||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 1317 TGCATCCCT-CTGGTGGAGTCTACGACGCACGCCCCAAGCCTGTTGGAATTGGATTCGGG 1375 Query 1385 GGAACACTTGGAAATGAGAGAATTTTCATTGATGAAGACTTTGCTAAAATCACAGTCCGT 1444 |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1376 GGAACACTTGGAAACGAGAGAATTTTCATTGGTGAAGACTTTGCTAAAATCACAGTCCGT 1435 Query 1445 CATCATGCAGTTGATAAAACTTACCAGTCAGGCTCTCTTTTCCCAAACCAGGGTTATTTA 1504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1436 CATCATGCAGTTGATAAAACTTACCAGTCAGGCTCTCTTTTCCCAAACCAGGGTTATTTA 1495 Query 1505 CCAGTAGAGGCTTTGGTTCTAGATATTGAAGCATGGGGGTTAGGTGGAAACAAGGCTAGG 1564 |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 1496 CCAGTAGAGGCTTTGGTTTTAGATATTGAAGCATGGGGGTTAGGTGGAAATAAGGCTAGG 1555 Query 1565 GAAATTCAACAAAAATACCAGAAAAGAGAAGAGCTTTTCACTAACCAACGTCGAAAGATC 1624 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1556 GAAATTCAACAAGCATACCAGAAAAGAGAAGAGCTTTTCACTAACCAACGTCGAAAGATC 1615 Query 1625 GACTTGAAAACGTTTACGAACTGGGAAGATTCACCTGAGAAAATGATGATGGATATGATG 1684 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1616 GACTTGAAAACATTTACGAACTGGGAAGATTCACCTGAGAAAATGATGATGGATATGATG 1675 Query 1685 GGTAATCCTAATGCTCCTAGAAAGGAAGAGAGGTAATGAATGAAAGACGAGAACTGGTTT 1744 |||||||||||||||||||||||||||||||||||||||| ||| | | ||| Sbjct 1676 GGTAATCCTAATGCTCCTAGAAAGGAAGAGAGGTAATGAA-------CGA-A---G-TTT 1723 Query 1745 GATATATACACACATATACGTTGTTGTCTCTTAAAATATATATGCAAGAAACTCTTTTGC 1804 |||||||| ||||| ||||||| |||||| | |||||||||| ||||||||||||| ||| Sbjct 1724 GATATATATACACACATACGTTTTTGTCTGT-AAAATATATAAGCAAGAAACTCTTCTGC 1782 Query 1805 TGTTCATG-AGCTCTTGGATTCAATGTGTAAGTTATGTATACTAGTGTTGCCAAAACTTG 1863 | || ||| | ||| ||||||||||||||||||||||||||||| ||||||| ||||| | Sbjct 1783 TATTTATGTA-CTCGTGGATTCAATGTGTAAGTTATGTATACTATTGTTGCCCAAACTCG 1841 Query 1864 AACCAGCCAGTTGATTTGATATTTGCCTATAAAAATTGGTTTTTATTCCCAGAGCTTCAA 1923 |||| ||| ||||||| |||| |||| |||||||||||||||||||||||||||||| | Sbjct 1842 AACCGGCCTGTTGATT--ATATCTGCCCATAAAAATTGGTTTTTATTCCCAGAGCTTCCA 1899 Query 1924 TA 1925 || Sbjct 1900 TA 1901 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72980909420 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5