BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39660.1
Length=1906
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947850 jgi|Araly1|947850|scaffold_704079.1 1903 0.0
> Ahg947850 jgi|Araly1|947850|scaffold_704079.1
Length=1450
Score = 1903 bits (1030), Expect = 0.0
Identities = 1323/1457 (91%), Gaps = 49/1457 (3%)
Strand=Plus/Plus
Query 201 aagtg-aaaagGAATCATTACCATGGCTGATCCGGCGATTAAGCTCTTTGGAAAGACGAT 259
||||| |||| |||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1 AAGTGAAAAAAGAATCATT--CATGGCTGATCCGGCGATTAAGCTCTTTGGGAAGACGAT 58
Query 260 TCCTTTACCTGAGCTTG--G-TGTTGTTGATTCTTCTTCTAGCTATACCGGATTTTTAAC 316
||||||||||||||||| | |||||||||||| | |||||||||||||||| |||||||
Sbjct 59 TCCTTTACCTGAGCTTGCTGTTGTTGTTGATTCCTGTTCTAGCTATACCGGAGTTTTAAC 118
Query 317 CGAAACTC-AGAT-----TCCTGTTCGGTTATCAGATTCGTGTACCGGCGATGATGATGA 370
|||||||| |||| || ||||||||||||||||||||||||| | || ||||||||
Sbjct 119 CGAAACTCAAGATCAGAATCTTGTTCGGTTATCAGATTCGTGTACC-G-GA-GATGATGA 175
Query 371 TGAAGAGATGGGT-GATTCCGGTTTAGGACGAGAAGAAGGTGATGATGTTGGTGA----- 424
||| ||||||||| | ||||||||||||| ||| || | ||||| || ||||||
Sbjct 176 TGATGAGATGGGTCG-TTCCGGTTTAGGAGGAGGTGATGATGATGTTGGTGGTGATGGTT 234
Query 425 -T-G-G-TGGAGGAGAGAGCGAGACTGATAAAAAGGAAGAAAAAGATAGTGAGTGTCAGG 480
| | | ||||||||||||||||| ||||||||||||||||||| ||| |||||||||||
Sbjct 235 CTCGTGTTGGAGGAGAGAGCGAGAGTGATAAAAAGGAAGAAAAAAATAATGAGTGTCAGG 294
Query 481 AAGAGTCATTGAGGAATGAATCTAATGATGTTACTAC---TACTACATCGGGTATAACTG 537
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 295 AAGAGTCATTGAGGCATGAATCTAATGATGTTACTACTAATACTACATCGGGTATAACTG 354
Query 538 AAAAAACGGAAACAACAAAAGCTGCAAAGACGAATGAAGA---GT--C--------A--G 582
|||||||||| || ||||| |||| |||||||||||||| || | | |
Sbjct 355 AAAAAACGGAGACTACAAAGGCTGGGAAGACGAATGAAGAGTCGTCACAGAATGAGACGG 414
Query 583 GTGGTACTGCTTGCTCTCAAGAGGGGAAGTTAAAGAAACCTGATAAGATTCTACCGTGTC 642
|||||||||||||||||||||||| ||| |||||||||| || |||||||| ||||| |
Sbjct 415 GTGGTACTGCTTGCTCTCAAGAGGCTAAGCTAAAGAAACCCGACAAGATTCTGCCGTGCC 474
Query 643 CGCGATGTAACAGCATGGAAACCAAGTTCTGTTACTACAACAACTATAATGTTAACCAAC 702
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 CGCGATGTAGTAGCATGGAAACCAAGTTCTGTTACTACAACAACTATAATGTTAACCAAC 534
Query 703 CTCGCCATTTCTGCAAGAAATGTCAGAGATATTGGACAGCTGGTGGAACGATGAGGAATG 762
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 535 CTCGCCATTTCTGCAAGAAATGTCAGAGGTATTGGACAGCTGGTGGAACGATGAGGAATG 594
Query 763 TTCCGGTTGGTGCTGGGAGACGTAAGAATAAGAGTCCAGCTTCTCATTATAACCGTCATG 822
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 595 TTCCGGTTGGTGCAGGGAGACGCAAGAATAAGAGTCCGGCTTCTCATTATAACCGTCATG 654
Query 823 TAAGTATAACATCTGCGGAAGCTATGCAGAAGGTGGCGAGAACTGATCTTCAACATCCTA 882
|||| |||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||
Sbjct 655 TAAGCATAACATCTGCGGAAGCTATGCAGAAGGCGGCGAGAACCGATCTTCAAAATCCTA 714
Query 883 ATGGTGCAAATCTTCTCACTTTTGGCTCTGATTCTGTGCTTTGTGAATCTATGGCTTCTG 942
|||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |
Sbjct 715 ATGGTGCAAATCTTCTCACTTTTGGCTCTGATTCGGTGCTCTGTGAATCAATGGCTTCGG 774
Query 943 GATTGAATCTTGTTGAGAAGTCATTGTTGAAGACACAAACTGTATTGCAAGAACCCAATG 1002
|||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||| ||
Sbjct 775 GATTGAATCTTGCTGAGAAGTCAATGTTGAAGACACAAACTGTGTTGCAAGAACCCATTG 834
Query 1003 AAGGCTTGAAGATTACGGTTCCGTTAAACCAGACAAACGAAGAAGCTGGAACAGTCAGCC 1062
|||| ||||||||||||||||| ||||||| | |||||||||| || |||||||||||||
Sbjct 835 AAGGTTTGAAGATTACGGTTCCTTTAAACCCGTCAAACGAAGAGGCCGGAACAGTCAGCC 894
Query 1063 CGTTACCAAAAGTTCCATGCTTTCCAGGACCACCACCA--A-CTTGGCCTTACGCTTGGA 1119
| |||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||
Sbjct 895 CATTACCAAAAGTTCCATGCTTTCCAGGACCACCACCACCAGCTTGGCCATACGCTTGGA 954
Query 1120 ACGGAGTTTCGTGGACGATTTTACCGTTTTACCCTCCACCGGCTTACTGGAGCTGCCCGG 1179
|||||||||| |||||| ||||||||||||| |||||||| |||||||||||||||||||
Sbjct 955 ACGGAGTTTCATGGACGGTTTTACCGTTTTATCCTCCACCTGCTTACTGGAGCTGCCCGG 1014
Query 1180 GGGTTTCACCGGGGGCATGGAACAGCTTCACATGGATGCCACAACCCAATTCACCATCTG 1239
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1015 GGGTTTCACCGGGGACATGGAACAGCTTCACCTGGATGCCACAACCCAATTCACCATCTG 1074
Query 1240 GTTCCAATCCAAATTCTCCTACACTAGGTAAACATTCACGTGACGAGAACGCTGCTGAAC 1299
| || |||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1075 GGTCTGGTCCAAATTCTCCTACACTAGGTAAACATTCCCGTGATGAGAACGCTGCTGAAC 1134
Query 1300 CAGGAACCGCTTTTGATGAAACCGAGTCACTTGGTAGGGAGAAAAGCAAACCCGAGAGAT 1359
||||| || |||| || |||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1135 CAGGAGCCACTTTCGAAGAAACCGAGTCACTTGGTAGAGAGAAAAGCAAACCGGAGAGAT 1194
Query 1360 GCTTGTGGGTTCCCAAGACGCTGAGGATTGATGATCCAGAGGAAGCTGCTAAAAGTTCCA 1419
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
Sbjct 1195 GCTTGTGGGTTCCCAAGACGCTGAGGGTCGATGATCCAGAGGAAGCTGCTAAAAGTTCAA 1254
Query 1420 TCTGGGAAACATTAGGGATCAAAAAAGACGAAAATGCGGATACTTTCGGAGCTTTCAGAT 1479
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1255 TCTGGGAAACATTAGGGATCAAAAAAGACGAAAATGCGGATACTTTCGGAGCTTTTAGAT 1314
Query 1480 CATCAACCAAAGAAAAAAGCAGTCTTTCTGAAGGAAGACTTCCGGGAAGAAGACCGGAGT 1539
|||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||
Sbjct 1315 CATCAACCAAAGAAAAAAGCAGTCTTTCTGAAGGAAAACTTCCGGGAAGACGAGCGGAGT 1374
Query 1540 TGCAAGCGAATCCTGCTGCTCTTTCTAGGTCAGCAAACTTCCATGAGAGCTCATAGAAAG 1599
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1375 TGCAAGCAAATCCTGCTGCTCTTTCTAGGTCAGCAAACTTCCATGAGAGCTCATAAAAAG 1434
Query 1600 AAGAAGAA-TCTAAGCA 1615
||| ||| | ||||||
Sbjct 1435 GAGA-GAAATTTAAGCA 1450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71609660600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5