BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39670.1
Length=889
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947849 jgi|Araly1|947849|scaffold_704078.1 1016 0.0
> Ahg947849 jgi|Araly1|947849|scaffold_704078.1
Length=652
Score = 1016 bits (550), Expect = 0.0
Identities = 619/651 (95%), Gaps = 10/651 (2%)
Strand=Plus/Plus
Query 79 TCTAACAAAAGTTATGACTGAAAACCAATTATATAGCTTTATAACCAT---GAAGAGTTC 135
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 8 TCTAACAAAAGTTATGACTGAAAACCAATTATATAGCTTTATAACCATGGAGAAGAGTTC 67
Query 136 ATTGTCTAAATGCAAACAGTCTTCTTCTTTGTCTTTCCCTTTGTTTGGTCTGATCAACTT 195
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 68 ATTGTCTAAATGCAAACAGTCTTCTTCTTTTTCTTTCCCTTTGTTTGGTCTGATCAACTT 127
Query 196 CTTCCTCATCGGTTTTTTCAGATGGGTTTCTTTTGCTCAGTTATTTTTCTCTAGGTTCTG 255
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||
Sbjct 128 CTTCCTCATCGGTTTTTTCAGATGGGTTTCTTTTGCTCAGTCATTTTTCTCCAGGTTTTG 187
Query 256 GCCTCTTGTTCAACACCAGCAATGTGTTTCCGAGAAGAAGAGCAAAGATCTTGAGTTCCA 315
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 188 GCCTCTTGTTCAACACCAGCAATGTGTTTCAGAGAAGAAGAGCAAAGATCTTGAGTTCCA 247
Query 316 AACTTCGATCAAACACGAAGAATATCGtgatgatgatgatgatgGTCTTTGCAGAGAAGA 375
|||||||||||||||||||||||||| | |||||||||||||||||| ||||||||
Sbjct 248 AACTTCGATCAAACACGAAGAATATC-----G-TGATGATGATGGTCTTTGTAGAGAAGA 301
Query 376 TGTAGGGATGGTTATGAAAAGCTTAGGGCTTTCCACTGACCAAGAAAACGAGGGACTTCA 435
|||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||
Sbjct 302 TGTAGGGATGGTTATGAAGAGCTTAGGGCTTTCCACCGACCAAGAATGTGAGGGACTTCA 361
Query 436 AAAACAGTACAGTTCCAAGGAGGTTTCGAATCTGTTCGAAGAGAAAGAGCCAAGCTTAGA 495
|||||||||||||||| ||||| ||||||||||||| |||||||||||||| || || ||
Sbjct 362 AAAACAGTACAGTTCCGAGGAGCTTTCGAATCTGTTTGAAGAGAAAGAGCCGAGTTTGGA 421
Query 496 GGAAGTGAAGCAAGCTTTTGATGTCTTTGATGAAAACAGAGATGGGTTTATCGATCCTAT 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 422 GGAAGTGAAGCAAGCTTTTGATGTCTTTGATGAAAACAGAGATGGGTTTATCGATCCAAT 481
Query 556 AGATTTGCAGAGAGTTTTGACAATCCTTGGCTTAAAGCAAGGATCTAACCTTGAGAACTG 615
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 482 AGATTTGCAGAGAGTTTTGACAATCCTTGGCTTAAAGCAAGGTTCTAACCTTGAGAATTG 541
Query 616 CAGGAGAATGATCAGATCATTCGATGGAAGTAAAGACGGAAGAATCGATTTCTATGGATT 675
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 542 CAGGAGAATGATCAGATCATTCGATGGAAATAAAGACGGAAGAATCGATTTCTATGGATT 601
Query 676 TGTGAAATTCATGGAGAACAACTTCTGCTGAAATCGTATTTCCTTAAAGTA 726
|||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 602 TGTGAAATTCATGGAGAACAACTTCTGCTGAAATCGTATTTCCTCAA-GTA 651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32938200288
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5