BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G39830.1 Length=1584 Score E Sequences producing significant alignments: (Bits) Value Ahg494007 jgi|Araly1|494007|fgenesh2_kg.7__3440__AT5G39830.1 2226 0.0 > Ahg494007 jgi|Araly1|494007|fgenesh2_kg.7__3440__AT5G39830.1 Length=1405 Score = 2226 bits (1205), Expect = 0.0 Identities = 1331/1392 (96%), Gaps = 7/1392 (1%) Strand=Plus/Plus Query 48 TCGACTGGTCTCAGAGTTTTCTCGAttttttttGGAAAGATGCAGGTAATAGCATCTTTC 107 ||||||| |||||||||||||| || |||| |||||||||||||||||||||||||||| Sbjct 18 TCGACTGATCTCAGAGTTTTCTTGA-ATTTTGTGGAAAGATGCAGGTAATAGCATCTTTC 76 Query 108 TGTTCGAAACCTAATGAGAATGAATTTGTTGGTCGACGACAACTTCTTTCTTCAGTCTGT 167 | || |||||||||||||||||||||||| |||||||||||||||||||| || | |||| Sbjct 77 TCTTTGAAACCTAATGAGAATGAATTTGTGGGTCGACGACAACTTCTTTCCTCCGCCTGT 136 Query 168 TCCAAAATTTCTCAAGGCGACGTCGTTTCACACCCACCCGTTTCTTCTGTCAAGGTTACT 227 |||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 137 TCCAGAATTTCTCAAGGCGACGTCGTTTCACACCCACCCGTTTCTTCAGTCAAGATTACT 196 Query 228 CAAGATTGGAAGTCGAATTTACATGAGTTAGCTGTGAAAAGTGTCCCTTCGACGACAAGG 287 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 197 CGAGATTGGAAGTCGAATTTACATGAGTTAGCTATGAAAAGTGTCCCTTCGACGACAAGG 256 Query 288 AGAATCTTGTTGACAAGTTTATTCATGAATTTGTGCTTTAATCCTTCAAGGTACTTATCA 347 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 257 CGAATCTTGTTGACAAGTTTATTCATGAATTTGTGCTTTAATCCTTCAAGGTACTTATCA 316 Query 348 GCCTTAGCACTTGGTGATCCATCCGTTGCAACCGTTGAAGATGTTAGTCCAACTGTTTTC 407 ||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||| Sbjct 317 GCCTTAGCACTTGGTGATCCATCTGTTGCGACCGTTGAAGATGTTAGTCCACCTGTTTTC 376 Query 408 CCAGCTGGACCTCTTTTCCCTACTGAGGGGAGAATTGTGCAACTGTTTGAGAAGAATACT 467 |||||||||||||||||||||||||||||||||||||| ||| |||||||||| || ||| Sbjct 377 CCAGCTGGACCTCTTTTCCCTACTGAGGGGAGAATTGTCCAATTGTTTGAGAAAAACACT 436 Query 468 TATTCCGTTGTCAACATCTTTGATGTGACATTACGGCCTCAGCTCAAAATGACGGGTGTG 527 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 437 TATTCCGTTGTCAACATATTTGATGTGACATTACGGCCTCAGCTCAAAATGACGGGTGTG 496 Query 528 GTTGAGATACCAGAAGGAAATGGCTCTGGAGTAGTCTGGGACGGACAAGGATACATCGTG 587 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 497 GTTGAGATACCAGAAGGAAATGGCTCTGGAGTAGTCTGGGATGGACAGGGATACATCGTG 556 Query 588 ACCAATTATCACGTTATTGGCAATGCCCTTTCAAGAAATCCTAGCCCCGGGGATGTAGTT 647 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 557 ACCAATTATCACGTTATTGGCAATGCCCTTTCAAGAAATCCTAACCCCGGGGATGTGGTT 616 Query 648 GGTCGTGTGAATATTCTGGCATCTGATGGGGTACAGAAGAACTTTGAAGGAAAACTTGTT 707 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 617 GGTCGTGTGAATATTCTGGCATCTGATGGGGTACAAAAGAACTTTGAAGGAAAACTTGTT 676 Query 708 GGTGCTGATCGTGCTAAGGATCTTGCTGTCTTGAAGGTGGATGCTCCC-GAAACTCTCCT 766 |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||| ||||| Sbjct 677 GGTGCTGATCGTGCTAAGGATCTTGCTGTCTTGAAGGTAGATGC-CCCTGAAACCCTCCT 735 Query 767 GAAACCGATTAAAGTTGGGCAGTCAAATTCTCTAAAGGTTGGACAGCAGTGTTTAGCAAT 826 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 736 GAAACCGATTAAAGTTGGGCAGTCAAACTCTCTAAAGGTTGGGCAGCAGTGTTTAGCAAT 795 Query 827 TGGAAACCCGTTTGGTTTTGACCACACTCTTACGGTTGGTGTCATCAGCGGTCTTAACCG 886 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 796 TGGAAACCCGTTTGGTTTTGACCACACTCTTACGGTTGGGGTCATCAGCGGTCTTAACCG 855 Query 887 TGACATATTTAGTCAAACTGGAGTTACCATTGGTGGTGGAATTCAAACTGATGCTGCCAT 946 |||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||| Sbjct 856 TGACATATTTAGTCAAACCGGAGTGACCATTGGTGGTGGAATTCAAACAGATGCAGCCAT 915 Query 947 TAACCCGGGAAATAGCGGAGGTCCTCTGCTCGATTCAAAAGGGAACTTGATTGGGATCAA 1006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 916 TAACCCGGGAAATAGCGGAGGTCCTCTGCTCGATTCAAAAGGGAACTTGATTGGGATCAA 975 Query 1007 CACGGCCATTTTCACACAGACAGGAACATCTGCGGGTGTTGGATTTGCTATTCCGTCATC 1066 ||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 976 CACGGCCATAGTCACACAGACAGGAACATCTGCGGGTGTCGGATTTGCAATTCCGTCATC 1035 Query 1067 AACAGTATTAAAGATTGTTCCTCAACTAATACAATTCAGCAAAGTCCTTCGAGCTGGTAT 1126 || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1036 GACTGTATTAAAGATTGTTCCTCAACTAATCCAATTCAGCAAAGTCCTTCGAGCTGGTAT 1095 Query 1127 TAACATAGAATTAGCCCCTGATCCAGTAGCTAATCAACTCAATGTTCGTAATGGAGCCCT 1186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1096 TAACATAGAATTAGCCCCTGATCCAGTAGCTAATCAACTCAATGTTCGTAATGGAGCCCT 1155 Query 1187 TGTCCTTCAGGTACCGGGTAAGAGTCTAGCGGAAAAAGCAGGATTACATCCGACATCCCG 1246 ||||||||||||||| || || |||||||| |||||||| |||||||||||||||||||| Sbjct 1156 TGTCCTTCAGGTACCCGGAAATAGTCTAGCAGAAAAAGCTGGATTACATCCGACATCCCG 1215 Query 1247 GGGTTTTGCTGGTAATATAGTGCTTGGAGATATCATTGTTGCAGTTGATGACAAACCTGT 1306 ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || Sbjct 1216 GGGTTTTGCTGGTAACATAGTACTTGGAGATATCATTGTTGCAGTTGATGACAAACCCGT 1275 Query 1307 GAAGAACAAAGCCGAGTTGATGAAGATATTGGATGAGTACAGTGTAGGTGATAAGGTGAC 1366 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1276 GAAGAACAAAGCCGAGTTGATGAAGATATTGGATGAGTACAGTGTAGGTGATAAGGTGA- 1334 Query 1367 A-CTTAAGATTAAGAGAGGAAATGAAGATTTGGAGTTAAAGATCTCA-TTGGAAGAGAAA 1424 | |||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 1335 ATCTTAAGATCAAGAGAGGAAATGAAGATTTGGAGTTAAAGATCTCACTTG-AAGAGAAA 1393 Query 1425 AGTTCATGAAAA 1436 |||||||||||| Sbjct 1394 AGTTCATGAAAA 1405 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59344601710 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5