BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G40240.2 Length=1349 Score E Sequences producing significant alignments: (Bits) Value Ahg493967 jgi|Araly1|493967|fgenesh2_kg.7__3400__AT5G40240.1 1757 0.0 Ahg330483 jgi|Araly1|330483|fgenesh1_pm.C_scaffold_7002710 981 0.0 Ahg493329 jgi|Araly1|493329|fgenesh2_kg.7__2762__AT4G15540.1 431 7e-120 > Ahg493967 jgi|Araly1|493967|fgenesh2_kg.7__3400__AT5G40240.1 Length=1228 Score = 1757 bits (951), Expect = 0.0 Identities = 1085/1151 (94%), Gaps = 4/1151 (0%) Strand=Plus/Plus Query 56 GAGAAGAGAAAGTGGCGTGGAAGTACTTTACCAGAGATGTTGTGCCGTTTGCTGCGATGT 115 ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||| Sbjct 80 GAGAAGAGAAAGTGGCGTGGAGGTATTTTACCAGAGATGTTGTGCCGTTTGCTGCTATGT 139 Query 116 TTGCGGTGGAGTGTGCCACTGTTGGGTCAAACACGCTGTTTAAGGCTGCTACTTTAAGAG 175 |||||||||||||| |||| |||||||||||||| |||||||||||||| ||| |||||| Sbjct 140 TTGCGGTGGAGTGTACCACGGTTGGGTCAAACACACTGTTTAAGGCTGCAACTATAAGAG 199 Query 176 GATTGAGCTTCTATGTCTTTGTCTTCTACTCTTATATTGTTTCAACACTTCTCCTTCTTC 235 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 200 GATTGAGCTTCTATGTCTTTGTCTTCTACTCTTATGTTGTTTCAACACTTCTCCTTCTTC 259 Query 236 CACTTTCTGTAATCTTTGGAAGGTCAAGAAGATTACCAGCAGCTAAGTCTCCTCTTTTCT 295 |||||||| ||||||||||||||||||||||||||||| |||| ||||||||||| |||| Sbjct 260 CACTTTCTTTAATCTTTGGAAGGTCAAGAAGATTACCATCAGCCAAGTCTCCTCTCTTCT 319 Query 296 TCAAGATTTTCTTACTTGGGCTTGTTGGGTTCATGTCGCAGATTGCTGGTTGTAAAGGTA 355 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 320 TCAAGATTTTCTTACTTGGGCTTGTCGGGTTCATGTCGCAGATAGCTGGTTGTAAAGGTA 379 Query 356 TTGCATACAGTTCCCCAACTCTTGCATCTGCTATCAGCAATCTCACACCGGCTTTCACAT 415 | | ||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 380 TAGAATATAGTTCCCCAACTCTTGCCTCTGCTATCAGCAATCTCACACCCGCTTTCACAT 439 Query 416 TCACACTCGCTGTTATCTTCAGGATGGAGCAAGTAAGGTTAAGGAGCTCTGCGACTCAGG 475 |||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 440 TCACGCTTGCTGTTATCTTCAGGATGGAACAAGTAAGGTTAAGAAGCTCTGCGACTCAGG 499 Query 476 CTAAAATCATTGGTGCAATACTATCTATATCTGGTGCTCTGGTAGTTGTGCTGTATAAAG 535 ||||||||||||| ||||||||||||||||||||||||||||||||| |||| || |||| Sbjct 500 CTAAAATCATTGGCGCAATACTATCTATATCTGGTGCTCTGGTAGTTTTGCTATACAAAG 559 Query 536 GCCCACAAGTTCTCGCCT-CTGCATCTTTTACAACTGTATTACCTACCGTTACACTTCAC 594 ||||||||||||||| || |||||||||||||| || ||| ||||||| || |||||||| Sbjct 560 GCCCACAAGTTCTCG-CTGCTGCATCTTTTACACCTTTATCACCTACCATTTCACTTCAC 618 Query 595 CAGCAGTTGACCTCAATAGAGTC-AAGCTGGATAATCGGAGGGCTCTTGCTTGCTTCACA 653 ||||| || |||||| ||||||| ||| |||||||||||||||||||| ||||||||||| Sbjct 619 CAGCATTTCACCTCATTAGAGTCAAAG-TGGATAATCGGAGGGCTCTTACTTGCTTCACA 677 Query 654 GTATTTTCTTATATCCGTCTGGTATATTCTTCAGACTCGTGTCATGGAGGTTTACCCTGA 713 ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 678 GTATTTTCTTATATCAGTCTGGTATATTCTTCAGACTCGTGTCATGGAGGTATACCCTGA 737 Query 714 AGAGATAACCGTAGTCTTCTTCTACAATTTATTTGCAACACTAATCTCAGTACCAGTATG 773 ||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 738 AGAAATAACGGTAGTCTTCTTCTACAACTTATTTGCAACACTAATCTCAGTACCAGTATG 797 Query 774 TCTTTTTGCGGAGAGCAACTTGACTTCTTGGGTGCTTAAACCAGACATTTCCCTCGCTGC 833 |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 798 TCTTCTTGCGGAGAGCAACTTGACTTCTTGGGTACTTAAACCAGACATTTCCCTCGCTAC 857 Query 834 AATCATATACTCGGGAGTCTTCGTTTCATTATTCAGCGCGCTTACCCACACATGGGGTCT 893 |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct 858 AATCATATACTCGGGAATCTTCGTTTCATTATTCAGCGCTCTTACCCACACATGGGGTCT 917 Query 894 GCATCTGAAGGGTCCGGTATACATATCCTTGTTCAGGCCATTGTCTATTGCGATTGCAGT 953 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 918 GCATCTGAAGGGTCCGGTATACATATCTTTGTTCAGGCCATTGTCTATTGCGATTGCAGT 977 Query 954 CGCCATGGGTGCTATATTCCTCGGCGATGCACTTCACCTTGGGAGTGTCATTGGATCAAT 1013 ||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||| | Sbjct 978 CGCTATGGGTGCTATATTCCTCGGCGATTCGCTTCACCTTGGGAGTGTCATTGGATCAGT 1037 Query 1014 GATATTGTGCATTGGATTCTACACTGTGATTTGGGGCAAAGCAAGAGAGGATACAATCAA 1073 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1038 GATATTGTGCATTGGATTCTACACTGTGATTTGGGGAAAAGCAAGAGAGGATACAATCAA 1097 Query 1074 AACTGTAGCTGGTTCTGAGCAGTCACCTTTGCTGCTTACACATATCATAGAAGATGGAGC 1133 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1098 AACTGTAGCTGATTCTGAGCAGTCACCTTTGCTGCTTACACATATCATAGAAGATGAAGC 1157 Query 1134 CTTTCCATTAAGCTAGGATTGATGCAAGTGAAATCCTTATACTATTTATTAATAAATATG 1193 ||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||||||| Sbjct 1158 CTTTCCATTAAATTAGGATTGATGCAAGTGGATTCCTTATACTATTCATTAATAAATATG 1217 Query 1194 GATCCCTAAAA 1204 |||| ||||| Sbjct 1218 TATCCTTAAAA 1228 > Ahg330483 jgi|Araly1|330483|fgenesh1_pm.C_scaffold_7002710 Length=1104 Score = 981 bits (531), Expect = 0.0 Identities = 914/1098 (83%), Gaps = 29/1098 (3%) Strand=Plus/Plus Query 54 AGGAGAAGAGAAAGTGGCGTGGAAG-TACT-TTACCAGAGATGTTGTGCCGTTTGCTGCG 111 |||||| |||| |||||| ||| || |||| || |||||||||||||||||| |||| Sbjct 15 AGGAGAGGAGACAGTGGCATGG-AGTTACTATT-GCAGAGATGTTGTGCCGTTCACTGCA 72 Query 112 ATGTTTGCGGTGGAGTGTGCCACTGTTGGGTCAAACACGCTGTTTAAGGCTGCTACTTTA 171 ||| | ||||||||||||| ||| ||||| || || || ||||| |||||||| || || Sbjct 73 ATGGTCGCGGTGGAGTGTGTCACGGTTGGATCTAATACACTGTTCAAGGCTGCGACATTG 132 Query 172 AGAGGATTGAGCTTCTATGTCTTTGTCTTCTACT-CTTATATTGTTTCAACACTTCTCCT 230 |||||||| ||||| ||||||||||||||||| | | ||| ||| | | |||||| | || Sbjct 133 AGAGGATTAAGCTTTTATGTCTTTGTCTTCTA-TACCTATGTTGGTGCTACACTTGTTCT 191 Query 231 TCTTCCACTTTCTGTAATCTTTGGAAGGTCAAGAAGATTACCAGCAGCTAAGTCTCCTCT 290 |||||||||||| | |||||||||||||||| ||||||||| |||| || | ||| | Sbjct 192 TCTTCCACTTTCCCTCATCTTTGGAAGGTCAAAAAGATTACCTTCAGCCAAAACCCCTGT 251 Query 291 TTTCTTCAAGATTTTCTTACTTGGGCTTGTTGGGTTCATGTCGCAGATTGCTGGTTGTAA 350 |||||||| ||||||||||||| |||||| ||||||||||| | ||| | ||||||||| Sbjct 252 CTTCTTCAATATTTTCTTACTTGCGCTTGTCGGGTTCATGTCACTGATAGTTGGTTGTAA 311 Query 351 AGGTATTGCATACAGTTCCCCAACTCTTGCATCTGCTATCAGCAATCTCACACCGGCTTT 410 |||||| | ||| ||||| ||||||||||| ||||||||||||||||| || || ||||| Sbjct 312 AGGTATAGAATATAGTTCACCAACTCTTGCCTCTGCTATCAGCAATCTGACGCCAGCTTT 371 Query 411 CACATTCACACTCGCTGTTATCTTCAGGATGGAGCAAGTAAG-GTTAAGGAGCTCTGCGA 469 ||||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| |||| Sbjct 372 CACATTCACCCTCGCCGTTATCTTCAGGATGGAACAAGT-AGTCTTAAGGAGCTCCGCGA 430 Query 470 CTCAGGCTAAAATCATTGGTGCAATACTATCTATATCTGGTGCTCTGGTAGTTGTGCTGT 529 ||||||||||||||||||| | ||| ||||||||||||||||| |||| ||||| || | Sbjct 431 CTCAGGCTAAAATCATTGGCACGATAGTATCTATATCTGGTGCTTTGGTTGTTGTTCTTT 490 Query 530 ATAAAGGCCC-ACAAGTTCTCGCCT-CTGCATCTTTTACAACTGTATTACCTACCGTTAC 587 |||||||||| | ||||||| || |||| || ||||| || || ||||||| || | Sbjct 491 ATAAAGGCCCTA-AAGTTCT-AACTGATGCAACTCTTACACCTCCATCACCTACCATTTC 548 Query 588 ACTTCACCAGCAGTTGACCTCAATAGAGTCAAGCTGGATAATCGGAGGGCTCTTGCTTGC 647 ||| ||||||| ||||| || | || || || |||||||||||||| || ||||| || Sbjct 549 GCTTTACCAGCATTTGACTTCGTTTGATTCGAGTTGGATAATCGGAGGTCTTTTGCTCGC 608 Query 648 TTCACAGTATTTTCTTATATCCGTCTGGTATATTCTTCAGACTCGTGTCATGGAGGTT-T 706 | |||||||||| ||| | || ||||||||||||||||||||||| |||||||| ||| | Sbjct 609 TACACAGTATTTGCTTGTTTCAGTCTGGTATATTCTTCAGACTCGGGTCATGGA-GTTAT 667 Query 707 ACCCTGAAGAGATAACCGTAGTCTTCTTCTACAATTTATTTGCAACACTAATCTCAGTAC 766 |||||||||| ||||| ||||| ||||| ||||| |||| ||| |||||||||| | || Sbjct 668 ACCCTGAAGAAATAACTGTAGTATTCTTGTACAACTTATGCGCAGCACTAATCTCGGCAC 727 Query 767 CAGTATGTCTTTTTGCGGAGAGCA-ACTTGACTTCTTGGGTGCTTAAACCAGACATTTCC 825 |||||||||| |||||||| | | ||||||| |||| | |||||||| | | ||| Sbjct 728 CAGTATGTCTATTTGCGGA-AAAAGACTTGACATCTTTTATACTTAAACCGGGTGTCTCC 786 Query 826 CTCGCTGCAATCATATACTCGGGAGTCTTCGTTTCATTATTCAGCGC-GCTTACCCACAC 884 || ||| || |||| |||||||||| ||| ||||||| ||| || | | ||| ||||| Sbjct 787 CTTGCTTCAGTCATGTACTCGGGAGGCTTAGTTTCATCATTTGGCTCAG-TTATACACAC 845 Query 885 ATGGGGTCTGCATCTGAAGGGTCCGGTATACATATCCTTGTTCAGGCCATTGTCTATTG- 943 |||||||||||||||||||||||| || |||||||||||||||| ||| |||||||||| Sbjct 846 ATGGGGTCTGCATCTGAAGGGTCCAGTCTACATATCCTTGTTCAAGCCGTTGTCTATTGT 905 Query 944 CGATTGCAGTCGCCATGGGTGCTATATTCCTCGGCGATGCACTTCACCTTGGGAGTGTCA 1003 | ||||| ||||| ||||||| |||||||||||||||||||||| ||||| ||||||||| Sbjct 906 C-ATTGCGGTCGCTATGGGTGTTATATTCCTCGGCGATGCACTTTACCTTAGGAGTGTCA 964 Query 1004 TTGGATCAATGATAT-TGTGCATT-GGATTCTACACTGTGATTTGGGGCAAAGCAAGAGA 1061 |||||||| |||| | || || || ||||||||||||||||||||||| ||||||||||| Sbjct 965 TTGGATCAGTGAT-TCTGAGC-TTAGGATTCTACACTGTGATTTGGGGAAAAGCAAGAGA 1022 Query 1062 GGATACAATCAAAACTGTAGCTGGTTCTGAGCAG---TCACCTTTGCTGC-TTACACATA 1117 |||| ||| ||||||||| |||| | |||||||| || |||||| ||| || |||| | Sbjct 1023 GGATTCAACCAAAACTGTGGCTGATACTGAGCAGCAGTCCCCTTTGTTGCCTT-CACACA 1081 Query 1118 TCATAGAAGATGGAGCCT 1135 ||||||||||| ||||| Sbjct 1082 CCATAGAAGATGAAGCCT 1099 > Ahg493329 jgi|Araly1|493329|fgenesh2_kg.7__2762__AT4G15540.1 Length=1170 Score = 431 bits (233), Expect = 7e-120 Identities = 422/512 (82%), Gaps = 18/512 (4%) Strand=Plus/Plus Query 613 GAGTCAAGCTGGATAATCGGAGGGCTCTTGCT-TG-CTTCACAGTAT-TTTCTTATATCC 669 ||||| || |||||||| ||||| || ||||| | || || | | | || ||| | || Sbjct 531 GAGTCTAGTTGGATAATTGGAGGCCTTTTGCTCGGTCTGCA-A-T-TCTTGCTTCTTTCA 587 Query 670 GTCTGGTATATTCTTCAGACTCGTGTCATGGAGGTTTACCCTGAAGAGATAACCGTAGTC 729 ||||||| |||||||||||||| | |||||||| | ||||||||||| ||| |||||| Sbjct 588 GTCTGGTTTATTCTTCAGACTCATATCATGGAGATATACCCTGAAGAAATAGTTGTAGTC 647 Query 730 TTCTTCTACAATTTATTTGCAACACTAATCTCA-GTACCAGTATGTCTTTTTGCGGAGAG 788 |||| |||||| |||| ||||| ||||||||| | | ||||||||| |||| || | Sbjct 648 TTCTGCTACAACTTATGCGCAACGCTAATCTCAGGGA-TAGTATGTCTACTTGCAGA-AA 705 Query 789 CA-ACTTGACTTCTTGGGTGCTTAAACCAGACATT-TCCCTCGCTGCAATCATATACTCG 846 | |||||| ||||||| ||||||||| | || ||||||||| || ||||||||||| Sbjct 706 AAGACTTGAATTCTTGGCAGCTTAAACCTG-GTTTCTCCCTCGCTTCAGTCATATACTCG 764 Query 847 GGAGTCTTCGTTTCATTATTCAGCGC-GCTTACCCACACATGGGGTCTGCATCTGAAGGG 905 ||| |||| | | ||| ||| || | | ||| ||||||||||||||| ||| ||||||| Sbjct 765 GGACTCTTTGATACATCATTGGGCTCAG-TTATCCACACATGGGGTCTTCATGTGAAGGG 823 Query 906 TCCGGTATACATATCCTTGTTCAGGCCATTGTCTATTGCGATTGCAGTCGCCATGGGTGC 965 |||||| ||| |||||||||||| ||||||||||||||| |||||||||||||||| ||| Sbjct 824 TCCGGTCTACGTATCCTTGTTCAAGCCATTGTCTATTGCAATTGCAGTCGCCATGGCTGC 883 Query 966 TATATTCCTCGGCGATGCACTTCACCTTGGGAGTGTCATTGGATCAATGATATTGTGCAT 1025 |||||||||||||||| | ||||||||||||||||| ||||||||| |||||||| || | Sbjct 884 TATATTCCTCGGCGATTCGCTTCACCTTGGGAGTGTGATTGGATCAGTGATATTGAGCTT 943 Query 1026 TGGATTCTACACTGTGATTTGGGGCAAAGCAAGAGAGGATACAATCAA-AACTGTA-GCT 1083 ||| || ||||||||||||||||||||||||||||||||| ||| | | ||| ||| | | Sbjct 944 TGGGTTTTACACTGTGATTTGGGGCAAAGCAAGAGAGGATGCAA-CTATAACAGTAAG-T 1001 Query 1084 GGTTCTGAGCAGTCACCTTTGCTGCTTACACA 1115 | |||||||||||||| ||| ||| |||||| Sbjct 1002 GATTCTGAGCAGTCACTTTTATTGCCTACACA 1033 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50474742108 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5