BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40390.1
Length=2829
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493949 jgi|Araly1|493949|fgenesh2_kg.7__3382__AT5G40390.1 4303 0.0
> Ahg493949 jgi|Araly1|493949|fgenesh2_kg.7__3382__AT5G40390.1
Length=2747
Score = 4303 bits (2330), Expect = 0.0
Identities = 2605/2735 (95%), Gaps = 30/2735 (1%)
Strand=Plus/Plus
Query 19 TTACATGTCGACCAATAATTCTATAAGTATCTAATGACATTTCCTATCTTTCTTTCAATC 78
|||||||||||||||||| ||||||||||| ||||||||||||| | |||||||||||||
Sbjct 1 TTACATGTCGACCAATAAATCTATAAGTATATAATGACATTTCCAAACTTTCTTTCAATC 60
Query 79 CATAATCTTATCATATAATCAAATTCGGGAAAGTTTTTAAGTTTCATAAACTCTATAAAT 138
||||||||||||| ||||||||||| ||||||||||||||| ||||||| ||||||||||
Sbjct 61 CATAATCTTATCAAATAATCAAATTTGGGAAAGTTTTTAAGATTCATAATCTCTATAAAT 120
Query 139 TACTCTCTACCATCTTAACCTAAAAAACATTCTCAATCCTTTGTCCAAAATCTTGCATAT 198
||||||||||||||||||||| ||||| | | || | | | | |||||| |||
Sbjct 121 TACTCTCTACCATCTTAACCT-AAAAA-A----C-AT-C--T-T-C--AATCTT--TTAT 164
Query 199 CGGCAAAATGGCTTCGCCGTGTTTGACCAAGTCCGATTCCGGTATCAATGGCGTTGACTT 258
||||||||||||| | ||| |||| ||||||||||||||||||| ||| |||||| ||||
Sbjct 165 CGGCAAAATGGCTCCACCGAGTTTAACCAAGTCCGATTCCGGTACCAACGGCGTTTACTT 224
Query 259 TACC-GAAAA-----ATTCCGGTTAGAAGATTCCACTCTCTTAGCCAATGGTCAAGTCGT 312
|||| ||||| ||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 225 TACCGGAAAACCTCTTTTCCGGTTAGAAGATTCCAATCTCTTAGCAAATGGTCAAGTCGT 284
Query 313 CTTAACCGATGTTCCGGTTAACGTTACTCTCACCTCTTCACCTTACTTAGTCGACAAAGA 372
|||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 285 CTTAACCGATGTTCCGGTTAACGTTACTCTCACCACTTCACCTTACCTAACCGACAAAGA 344
Query 373 CGGTGTACCACTCGACGTCTCTGCCGGTTCATTCATCGGGTTTAACCTCGACGGAGAGCC 432
||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 345 CGGCCTACCAATCGACGTCTCCGCCGGTTCATTCATCGGGTTTAACCTCGACGGAGAGCC 404
Query 433 CAAAAGCCACCACGTGGCATCCATCGGAAAACTCAAGAACATTCGTTTCATGAGCATATT 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 CAAAAGCCACCACGTGGCATCCATCGGAAAACTCAAGAACATTCGTTTCATGAGCATATT 464
Query 493 CCGTTTCAAGGTTTGGTGGACTACTCATTGGGTCGGATCAAACGGACGTGACATCGAGAA 552
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 465 CCGTTTCAAGGTTTGGTGGACCACTCATTGGGTCGGATCAAACGGACGTGACATCGAGAA 524
Query 553 CGAGACTCAAATCATCATTCTTGATCAATCCGGGTCGGATTCTGGACCCGGATCCGGGTC 612
|||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 525 CGAGACCCAAATCATCATTCTTGATCAATCCGCGTCGGATTCTGGATCCGGATCCGGGTC 584
Query 613 GGGTCGTCCTTATGTTCTCTTGCTACCTCTTCTTGAAGGCTCCTTCCGTTCATCATTCCA 672
||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||
Sbjct 585 GGGTCGTCCTTATGTTCTCCTGTTACCTCTTCTTGAAGGCTCCTTCCGTTCATCTTTCCA 644
Query 673 ATCCGGAGAAGACGATGACGTGGCGGTCTGTGTCGAATCCGGGTCGACCGAAGTAACCGG 732
||| |||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||
Sbjct 645 ATCTGGAGAAGACGATGATGTGGCGGTCTGTGTCGAATCCGGGTCAACCCAAGTAACCGG 704
Query 733 GTCGGAGTTTCGTCAGATTGTGTATGTCCATGCCGGGGATGACCCGTTCAAGCTCGTGAA 792
|||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 705 GTCGGAGTTTCGTCAGATTGTGTATGTCCACGCCGGAGATGACCCGTTTAAGCTCGTGAA 764
Query 793 AGACGCCATGAAAGTGATTAGGGTTCATATGAATACGTTCAAGCTTCTTGAAGAGAAATC 852
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 GGACGCCATGAAAGTGATTAGGGTTCATATGAATACGTTCAAGCTTCTTGAAGAGAAATC 824
Query 853 GCCGCCGGGAATTGTCGATAAATTCGGGTGGTGCACTTGGGATGCTTTTTACTTGACGGT 912
|||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 825 GCCGCCGGGAATCGTCGATAAGTTCGGGTGGTGCACTTGGGACGCTTTTTACTTGACGGT 884
Query 913 GAATCCTGACGGAGTTCATAAAGGTGTTAAGTGTCTCGTCGACGGTGGTTGTCCTCCGGG 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 GAATCCTGACGGAGTTCATAAAGGTGTTAAGTGTCTCGTCGACGGTGGTTGTCCTCCGGG 944
Query 973 ATTGGTTCTTATCGACGACGGTTGGCAATCGATTGGACATGATTCCGATGGTATTGATGT 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 ATTGGTTCTTATCGACGACGGTTGGCAATCGATTGGACATGATTCCGATGGTATTGATGT 1004
Query 1033 CGAAGGGATGAATATTACCGTCGCCGGTGAACAAATGCCTTGCAGGCTTCTGAAGTTTGA 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 CGAAGGGATGAATATTACCGTCGCCGGTGAACAAATGCCTTGCAGGCTTCTGAAGTTTGA 1064
Query 1093 AGAGAACCACAAATTCAAAGACTACGTTTCTCCAAAAGATCAAAACGACGTCGGAATGAA 1152
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1065 AGAGAACCACAAATTCAAAGACTACGTGTCTCCAAAAGATCAAAACGACGTCGGAATGAA 1124
Query 1153 AGCTTTCGTCAGAGATCTGAAAGATGAATTCTCCACCGTTGATTACATCTACGTTTGGCA 1212
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1125 AGCTTTCGTCAGAGATCTGAAAGATGAATTCTCCACCGTTGATTACATCTACGTCTGGCA 1184
Query 1213 CGCACTTTGCGGTTACTGGGGAGGTCTCCGTCCTGAAGCTCCGGCTCTGCCGCCGTCGAC 1272
||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||
Sbjct 1185 CGCACTTTGCGGTTACTGGGGAGGTCTCCGTCCCGAAGCTCCGACTCTTCCGCCGTCGAC 1244
Query 1273 CATTATCCGGCCCGAGCTCTCTCCAGGACTTAAACTAACAATGGAAGATCTCGCCGTCGA 1332
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1245 TATTATCCGGCCAGAGCTCTCTCCAGGACTTAAACTCACAATGGAAGATCTCGCCGTCGA 1304
Query 1333 TAAGATCATAGAGACCGGAATCGGATTTGCCTCGCCGGACTTGGCGAAAGAGTTCTACGA 1392
||||||||| ||||||||||||||| ||| |||||||||||||||||||||| |||||||
Sbjct 1305 TAAGATCATTGAGACCGGAATCGGACTTGTCTCGCCGGACTTGGCGAAAGAGGTCTACGA 1364
Query 1393 AGGTCTTCACTCTCATCTTCAAAACGCCGGTATTGACGGCGTTAAAGTTGATGTCATCCA 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 AGGTCTTCACTCTCATCTTCAAAACGCCGGTATTGACGGCGTTAAAGTTGATGTCATCCA 1424
Query 1453 CATATTGGAGATGTTATGCCAGAAATATGGCGGGAGAGTTGACTTGGCCAAAGCTTACTT 1512
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 CATATTGGAGATGTTGTGCGAGAAATATGGCGGGAGAGTTGACTTGGCCAAAGCTTACTT 1484
Query 1513 CAAGGCGTTAACGTCGTCAGTGAATAAGCATTTTAACGGTAACGGCGTTATCGCCAGCAT 1572
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1485 CAAGGCGCTAACGTCGTCAGTGAATAAGCATTTTAATGGTAACGGCGTTATCGCCAGCAT 1544
Query 1573 GGAGCATTGCAATGACTTTATGTTCCTTGGAACTGAAGCCATCTCTCTTGGTCGTGTCGG 1632
|||||| || |||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1545 GGAGCACTGTAATGACTTCATGTTCCTTGGAACTGAAGCCATCGCTCTTGGTCGTGTCGG 1604
Query 1633 TGATGACTTTTGGTGCACGGATCCATCAGGCGATCCAAACGGTACGTTTTGGCTACAAGG 1692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1605 TGATGACTTTTGGTGCACGGATCCATCAGGCGATCCAAACGGTACGTTTTGGCTACAAGG 1664
Query 1693 ATGTCACATGGTCCACTGTGCATACAACAGTCTCTGGATGGGAAATTTCATTCAGCCTGA 1752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 ATGTCACATGGTCCACTGTGCATACAACAGTCTCTGGATGGGAAATTTCATTCAGCCTGA 1724
Query 1753 TTGGGACATGTTTCAGTCCACACATCCTTGTGCTGAGTTCCATGCTGCTTCTCGGGCCAT 1812
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1725 TTGGGACATGTTTCAGTCCACTCATCCTTGTGCTGAGTTCCATGCTGCTTCTCGAGCCAT 1784
Query 1813 TTCCGGTGGGCCGATTTACATCAGTGATTGTGTGGGCAAGCATGATTTTGATCTCTTGAA 1872
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1785 ATCGGGTGGGCCGATTTACATCAGTGATTGTGTGGGCAAGCATGATTTCGATCTCTTGAA 1844
Query 1873 GCGTCTTGTTTTGCCCAACGGTTCGATTTTGAGGTGTGAGTACTATGCTCTCCCAACTCG 1932
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845 GCGTCTAGTTTTGCCCAACGGTTCGATTTTGAGGTGTGAGTACTATGCTCTCCCAACTCG 1904
Query 1933 TGACCGTCTCTTTGAGGATCCTCTTCATGATGGCAAAACCATGCTCAAGATTTGGAACTT 1992
|||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1905 TGACCGCCTATTTGATGATCCTCTTCATGATGGCAAAACCATGCTCAAGATTTGGAACTT 1964
Query 1993 GAACAAGTACACTGGAGTTATTGGAGCATTCAACTGTCAAGGAGGAGGATGGTGCAGAGA 2052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1965 GAACAAGTACACTGGAGTTATTGGAGCATTCAACTGTCAAGGAGGAGGATGGTGCAGAGA 2024
Query 2053 AACCAGACGTAACCAATGTTTCTCTGAATGCGTCAACACGTTAACCGCCACCACAAGCCC 2112
||||||||| ||||||||||||||||||||||| |||||| |||| ||||| ||||||||
Sbjct 2025 AACCAGACGCAACCAATGTTTCTCTGAATGCGTTAACACGCTAACTGCCACAACAAGCCC 2084
Query 2113 TAAAGACGTTGAATGGAACAGTGGAAGCAGCCCAATCTCCATTGCAAACGTTGAAGAGTT 2172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2085 TAAAGACGTTGAATGGAACAGTGGAAGCAGCCCAATCTCCATTGCAAACGTTGAAGAGTT 2144
Query 2173 TGCTTTGTTCTTGTCTCAATCCAAGAAGCTTTTGTTGTCTGGACTAAACGATGATCTTGA 2232
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||
Sbjct 2145 TGCTTTGTTCTTGTCTCAATCCAAGAAGCTTGTGTTGTCTGGACTAAATGATGATCTCGA 2204
Query 2233 GCTGACTTTGGAGCCTTTCAAGTTTGAGCTGATCACTGTCTCTCCTGTTGTGACCATTGA 2292
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2205 GCTCACTTTAGAGCCTTTCAAGTTTGAGCTGATCACTGTCTCTCCTGTTGTGACCATTGA 2264
Query 2293 GGGTAATTCAGTCCGGTTTGCTCCGATTGGACTGGTTAACATGCTAAACACAAGCGGTGC 2352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2265 GGGTAATTCAGTCCGGTTTGCTCCGATTGGACTGGTTAACATGCTAAACACAAGCGGTGC 2324
Query 2353 GATCCGGTCTTTGGTGTATAATGATGAATCTGTTGAGGTCGGAGTTTTTGGTGCCGGAGA 2412
|||||||||| ||||||||||||||||| ||||| || |||||||||||||||| |||||
Sbjct 2325 GATCCGGTCTCTGGTGTATAATGATGAAACTGTTCAGATCGGAGTTTTTGGTGCGGGAGA 2384
Query 2413 GTTTAGGGTTTATGCATCGAAAAAACCTGTGAGCTGCTTAATTGATGGTGAAGTTGTTGA 2472
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2385 GTTTAGGGTTTATGCATCGAAAAAACCTGAGAGCTGCTTAATTGATGGTGAAGTTGTTGA 2444
Query 2473 GTTTGGTTATGAAGACTCAATGGTGATGGTGCAAGTCCCTTGGTCTGGTCCAGATGGTTT 2532
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2445 GTTTGGTTATGAAGACTCAATGGTGATGGTGCAAGTGCCTTGGTCTGGTCCAGAGGGTTT 2504
Query 2533 GTCTTCTATTCAGTATTTGTTTTAGAGATTTTGAAGGTCCTTATTTGTTTCCTTCTTAAC 2592
| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 2505 GACTTCTATTGAGTATTTGTTTTAGAGAATTTGAAGGTCCTTATTTGTTTCCTTCTAAAC 2564
Query 2593 TCCGTACCGTTCGTTGAGTTTTTGAAAGAACTCCGAGCCGTTTTTT--ATATGGTTT-CT 2649
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
Sbjct 2565 TCCGTACCGTTCGTTGAGTTTTCCAAAGAACTCCGAGCCGTTTTTTTTATATGGTTTTC- 2623
Query 2650 GAGAGTAAACAATTTATGTTGG-tttttttttgtcaaaca-tttatgttggcttttttat 2707
|||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 2624 GAGAGTGAACAATTTATGTTGGGTTTTTTTTTGTCAAACAATTTATGTTGGCTTTTTTAT 2683
Query 2708 ttgaggattttctttttATCATTGGTAGAATCTTT 2742
||||||||||| |||| |||| |||||||||||||
Sbjct 2684 TTGAGGATTTT-TTTT-ATCAGTGGTAGAATCTTT 2716
Score = 60.2 bits (32), Expect = 8e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 2783 TTTTCATAATTTGTGACAGAATTGTTATCAAC 2814
||||||||||||||||||||||||||||||||
Sbjct 2716 TTTTCATAATTTGTGACAGAATTGTTATCAAC 2747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106766956735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5