BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40440.1
Length=1791
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493944 jgi|Araly1|493944|fgenesh2_kg.7__3377__AT5G40440.1 2691 0.0
> Ahg493944 jgi|Araly1|493944|fgenesh2_kg.7__3377__AT5G40440.1
Length=1719
Score = 2691 bits (1457), Expect = 0.0
Identities = 1601/1672 (96%), Gaps = 3/1672 (0%)
Strand=Plus/Plus
Query 72 aaaagcaacaaacTTTGAGAGTAACAAAGAAAAAGTAGTTATCATGGCGGCATTGGAGGA 131
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 40 AAAAGCAACAAACTTTGAGAGTAATAAAGAAAAAGTAGTTATAATGGCGGCATTGGAGGA 99
Query 132 GCTAAAGAAGAAGCTGTCTCCATTGTTTGATGCTGAGAAGGGTTTTTCTTCATCTTCATC 191
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 100 GCTAAAGAAGAAGCTTTCTCCATTGTTTGATGCTGAGAAGGGTTTTTCTTCATCGTCATC 159
Query 192 TTTGGATCCAAACGATTCATATTTATTATCTGATGGTGGGACTGTGAATTTACTTAGTAG 251
||||||||||||||||| ||||||||||| |||||||| || |||||||||||||||||
Sbjct 160 GTTGGATCCAAACGATTCCTATTTATTATCAGATGGTGGAACAGTGAATTTACTTAGTAG 219
Query 252 ATCATATGGAGTTTATAATTTTAACGAGCTCGGGTTACAAAAATGTACATCTTCTCATGT 311
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 ATCATATGGAGTTTACAATTTTAACGAGCTCGGGTTACAAAAATGTACATCTTCTCATGT 279
Query 312 GGATGAGTCTGAAAGTTCCGAGACGACGTATCAATGTGCTTCTCACGAAATGCGGGTTTT 371
|||||||||||||||||| ||||||||||||||||||||||| || |||||| |||||||
Sbjct 280 GGATGAGTCTGAAAGTTCTGAGACGACGTATCAATGTGCTTCCCATGAAATGAGGGTTTT 339
Query 372 TGGAGCTATAGGAAGCGGAGCTAGCAGCGTTGTTCAACGAGCTATTCATATCCCTAATCA 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 TGGAGCTATAGGAAGCGGAGCTAGCAGCGTTGTTCAACGAGCTATTCATATCCCTAATCA 399
Query 432 TAGAATTTTAGCGTTGAAGAAGATTAATATCTTTGAAAGGGAGAAAAGGCAGCAATTGCT 491
||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 400 TAGAATTCTAGCTTTGAAGAAGATTAATATCTTTGAAAGGGAGAAAAGACAGCAATTGCT 459
Query 492 TACAGAGATACGGACATTGTGTGAAGCTCCTTGTCATGAAGGACTTGTGGATTTTCACGG 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 TACAGAGATACGGACATTGTGTGAAGCTCCTTGTCATGAAGGACTTGTGGATTTTCACGG 519
Query 552 AGCGTTTTATAGTCCAGACTCGGGACAAATCAGCATAGCTCTTGAATATATGAATGGAGG 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 AGCGTTTTATAGTCCAGACTCGGGACAAATCAGCATAGCTCTTGAATATATGAATGGAGG 579
Query 612 ATCTCTTGCTGATATTTTAAAAGTAACAAAGAAGATACCTGAGCCGGTTCTTTCATCATT 671
||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||| |
Sbjct 580 ATCTCTTGCAGATATCTTAAAAGTTACAAAAAAGATACCTGAGCCGGTTCTTTCATCAAT 639
Query 672 GTTCCACAAACTTTTGCAAGGATTGAGCTACTTGCATGGAGTGAGACATCTTGTTCATAG 731
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 640 GTTCCACAAACTTTTGCAAGGATTGAGCTACTTGCATGGAGTGAGACATCTTGTACATAG 699
Query 732 AGACATTAAACCTGCTAATTTGCTTATAAATCTCAAAGGGGAACCGAAGATAACCGATTT 791
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 700 AGACATTAAACCTGCAAATTTACTTATAAATCTGAAAGGGGAACCGAAGATAACCGATTT 759
Query 792 TGGCATAAGTGCTGGCCTTGAGAATTCAATGGCTATGTGTGCTACTTTTGTTGGAACTGT 851
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 760 CGGCATAAGTGCTGGCCTCGAGAACTCAATGGCTATGTGTGCTACTTTTGTTGGAACTGT 819
Query 852 CACCTACATGTCACCAGAGAGGATAAGGAATGACAGTTATTCTTATCCAGCTGATATATG 911
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 CACCTACATGTCACCGGAGAGGATAAGGAATGACAGTTATTCTTATCCAGCTGATATATG 879
Query 912 GAGCCTTGGTCTCGCTCTTTTTGAATGCGGCACTGGAGAGTTTCCGTATATAGCTAATGA 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 GAGCCTTGGTCTCGCTCTTTTTGAATGCGGCACTGGAGAGTTTCCGTATATAGCTAATGA 939
Query 972 AGGGCCTGTTAATCTTATGTTGCAGATATTGGATGATCCTTCACCAACACCACCAAAACA 1031
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 940 AGGGCCTGTTAATCTTATGTTGCAGATCTTGGATGATCCATCACCAACACCACCAAAACA 999
Query 1032 AGAATTCTCACCAGAGTTCTGTTCCTTCATTGATGCTTGCCTCCAGAAGGATCCAGATGC 1091
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 AGAATTTTCACTAGAGTTCTGTTCCTTCATTGATGCTTGCCTCCAGAAGGATCCAGATGC 1059
Query 1092 TCGACCAACAGCTGACCAGCTCTTGTCACACCCTTTTATTACAAAACACGAGAAGGAAAG 1151
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1060 TAGACCAACAGCTGACCAGCTCTTGGCACACCCTTTTATTACAAAACACGAGAAGGAAAG 1119
Query 1152 AGTAGATTTGGCGACTTTTGTTCAAAGCATCTTTGATCCAACTCAGAGATTGAAAGATTT 1211
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1120 AGTAGATTTGGCGACTTTTGTTCAAAGCATCTTTGATCCAACTCAGAGACTGAAAGATTT 1179
Query 1212 AGCTGATATGCTCACCATACATTATTACTCCCTCTTTGATGGATTTGATGATCTTTGGCA 1271
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1180 AGCTGATATGCTCACCATACACTATTACTCCCTCTTTGATGGATTTGATGATCTTTGGAA 1239
Query 1272 CCACGCAAAATCGCTCTACACTGAAACTTCAGTTTTCAGTTTCTCTGGGAAACATAACAC 1331
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1240 CCATGCAAAATCGCTCTACACTGAAACTTCAGTTTTCAGTTTCTCTGGGAAACATCACAC 1299
Query 1332 AGGATCAACTGAAATCTTCTCAGCATTATCAGACATTCGTAACACATTAACAGGAGATTT 1391
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1300 AGGATCAACTGAAATCTTCTCAGCATTATCAGACATTCGTAACACATTAACAGGGGATTT 1359
Query 1392 ACCGAGTGAGAAACTTGTTCATGTCGTTGAGAAGCTTCATTGCAAACCTTGCGGCAGTGG 1451
|||||||||||| || || |||||||||||||||||||||||||| || ||||| |||
Sbjct 1360 ACCGAGTGAGAAGCTCGTCCATGTCGTTGAGAAGCTTCATTGCAAGCCACACGGCAATGG 1419
Query 1452 TGGAGTCATAATTCGTGCTGTTGGATCGTTTATTGTTGGAAATCAGTTTCTGATCTGTGG 1511
|||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||
Sbjct 1420 TGGAGTCATAATTCGTGCCGTTGGATCGTTTATTGTCGGGAATCAGTTTCTGATTTGTGG 1479
Query 1512 TGATGGAGTCCAAGCAGAAGGGCTTCCGAGTTTCAAAGATCTTGGCTTCGATGTCGCAAG 1571
||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1480 TGATGGAGTTCAAGCAGAAGGGCTTCCGAGTTTCAAAGATCTCGGGTTCGATGTCGCAAG 1539
Query 1572 TAGACGTGTTGGCCGATTTCAAGAACAGTTTGTTGTTGAATCTGGTGATCTTATTGGAAA 1631
|||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1540 TAGACGTGTTGGTCGATTTCAAGAACAGTTTGTGGGTGAATCTGGTGATCTTATTGGAAA 1599
Query 1632 GTATTTTCTTGCTAAGCAAGAGCTTTATATTACAAACTTAGATTAGATAAACACACATGA 1691
||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1600 GTATTTTATAGCTAAGCAAGAGCTTTATATTACAAACTTAGATTAGAGAAACACACATGA 1659
Query 1692 GAAAACGTTTGTTCTCTACTGTACTATAATGTAACTATGAACTTGTTTAATT 1743
|||||| |||||| ||||||||| || | ||||||||| ||| ||| |||||
Sbjct 1660 GAAAACTTTTGTTTTCTACTGTA-TA-A-TGTAACTATAAACATGTGTAATT 1708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67229282425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5