BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G40500.1 Length=697 Score E Sequences producing significant alignments: (Bits) Value Ahg355933 jgi|Araly1|355933|fgenesh1_pg.C_scaffold_7003106 490 6e-138 > Ahg355933 jgi|Araly1|355933|fgenesh1_pg.C_scaffold_7003106 Length=348 Score = 490 bits (265), Expect = 6e-138 Identities = 295/309 (95%), Gaps = 3/309 (1%) Strand=Plus/Plus Query 217 GTAGGATGGAGGTTGCAGATAAATTGCAGAAAGAAAGAGAAAGGAAGAGATCAGAGTCAT 276 |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 40 GTAGGAGGGAGGTTGGAGATAAATTGCAGAAAGAAAGAGAAAGGAAGAGATCAGAGTAAT 99 Query 277 TA---TCCTTACAAAGTCATTGAAATCACTCCTCCTCCTAAATCTCTCGGCATTCGTTGC 333 || |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 100 TATCCTCCTTACAAAGTTATTGAAATCACTCCTCCTCCTAAATCTCTCGGCATTCGTTGC 159 Query 334 CTTCCTCATAACCTTCAATGTGGAGAGAACGTGATGATCGAAGGGCAAACGTACACAATC 393 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 160 CTTCCTCATAACCTTCAATGTGGAGAGAATGTTATGATCGAAGGGCAAACGTACACAATC 219 Query 394 TCTGCTGTGACTCACCGGTATCAGCTCCGGAAAGGCAAATACGAGCCGAGTGAGAGGCGG 453 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 220 TCCGCGGTGACTCACCGGTATCAGCTCCGGAAAGGCAAATACGAGCCGAGTGAGAGGCGG 279 Query 454 CTCGATGTTCTCTCTGCTGCTAGATACGTTTTAAACCTTTACTTCGACAATTTGCTCCAA 513 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 280 CTCGATGTTCTCTCTGCCGCTAGATACGTTTTAAACCTTTACTTCGACAATTTACTCCAA 339 Query 514 AACTCCTGA 522 ||||| ||| Sbjct 340 AACTCTTGA 348 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25618600224 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5