BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40670.1
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493915 jgi|Araly1|493915|fgenesh2_kg.7__3348__AT5G40670.1 1635 0.0
Ahg913114 jgi|Araly1|913114|Al_scaffold_0001_3368 145 1e-33
Ahg952321 jgi|Araly1|952321|scaffold_5800005.1 100 2e-20
Ahg915504 jgi|Araly1|915504|Al_scaffold_0008_255 73.1 5e-12
> Ahg493915 jgi|Araly1|493915|fgenesh2_kg.7__3348__AT5G40670.1
Length=1200
Score = 1635 bits (885), Expect = 0.0
Identities = 1110/1208 (92%), Gaps = 57/1208 (5%)
Strand=Plus/Plus
Query 23 AAAATCACCTGCTTCACCCATCACGCTAAGATCGTGGAATCTTATATCACTAGACTCTCC 82
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 AAAATCACCTGCTTTACCCATCACGCTAAGATCGTGGAATCTTATATCACTAGACTCT-C 59
Query 83 CAGATCATGACACGTCATCATCTTCATCATGAGACCCATAATTTTTTGAAACTGTTTTAT 142
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 60 CAGATCATGACACGTCATCA---TCATCTTGAGACCCATAATTTTTTGAAACTGTTTTAT 116
Query 143 TTCACTCCCCAATAATATTTTCTGCTTTTAGCTCTTTTTAAGGCTCTTCA-AAAATCTCC 201
|||| | ||| | | || | | |||||||||||||| |||||||||
Sbjct 117 TTCATTTCCC----A-A-----TG-----A----TATTTAAGGCTCTTCATAAAATCTCC 157
Query 202 GTCAACGTCGA-GAACAAAATTTGGAGAAATCGAACAGACGATCGAGATCGAGGAAAATG 260
||||||||| | ||||||| |||||||||||||| ||| |||| ||| | ||||||
Sbjct 158 GTCAACGTC-ACAAACAAAACTTGGAGAAATCGAAAAGA-GATC--GAT--A--AAAATG 209
Query 261 GCGTCGTGGAATTCGATTCCGCTGGAGATCTCGTACGAAATCGTTGGATGGATCGCGTTT 320
||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||
Sbjct 210 GCGTCGTGGAATTCGATTCCGCTAGAGATTTCGTATGAAATCGTTGGATGGATCGCTTTT 269
Query 321 GCTTCGTGGTCAATTAGCTTTTACCCACAGCTGATTTTGAATTTCCGTAGGAGAAGTGTT 380
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 270 GCTTCGTGGTCAATTAGCTTTTACCCACAATTGATTTTGAATTTCCGTAGGAAAAGTGTT 329
Query 381 GTTGGATTGAACTTCGACTTCGTGATGTTGAATTTGACAAAGCACTCGTCGTATATGATC 440
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 330 GTTGGATTGAACTTCGACTTCGTGATGTTGAATTTGACAAAACACTCGTCGTATATGATC 389
Query 441 TACAATGTCTGCCTCTACTTTAGTCCTGTTATTCAAAAGCAGTACTTTGACACTTATGGC 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 TACAATGTCTGCCTCTACTTTAGTCCTGTTATTCAAAAGCAGTACTTTGACACTTATGGC 449
Query 501 GATAAAGAGATGATACCTGTGGCTGCAAATGATGTTGCATTCTCGATCCATGCAGTTGTA 560
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 450 GATAAAGAGATGATACCTGTGGCTGCGAATGATGTTGCATTCTCAATCCATGCAGTTGTA 509
Query 561 ATGACAGCTGTTACACTGTTCCAGATCTTTATCTATGAACGTGGACCTCAAAAAGTATCC 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 ATGACAGCTGTTACACTGTTCCAGATCTTTATCTATGAACGTGGACCTCAAAAAGTATCT 569
Query 621 AGACTTGCTATAGGTATTGTGGTTGTTGTGTGGGGATTTGCAGCTATCTGTTTCTTCATA 680
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 570 AGACTTGCTATAGGTATTGTGGTTGTTGTGTGGGCATTTGCAGCTATCTGTTTCTTCATA 629
Query 681 GCATTACCTACACACTCTTGGCTATGGCTCATTTCAATCTTCAATTCGATTCAGGTCTTC 740
|||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 630 GCATTACCTACACACTCTTGGCTATGGCTCATCTCGATCTTCAATTCAATTCAGGTCTTC 689
Query 741 ATGACATGCGTCAAGTACATCCCACAGGCAAAGATGAACTTCACTAGGAAGAGCACAGTC 800
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 690 ATGACATGCGTCAAGTACATTCCACAGGCAAAGATGAACTTCACTAGAAAGAGCACAGTC 749
Query 801 GGGTGGAGCATCGGGAATATTCTTCTCGATTTTACTGGAGGACTTGCTAACTATCTGCAA 860
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 750 GGATGGAGCATCGGGAATATTCTTCTTGATTTTACTGGAGGACTTGCTAATTATCTGCAA 809
Query 861 ATGGTTATACAATCTATTGACCAAAATTCTTGGAAGAATTTCTATGGGAACATGGGAAAG 920
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 810 ATGGTTATACAATCTATTGACCAAAATTCTTGGAAGAATTTCTATGGGAACATTGGAAAG 869
Query 921 ACTCTTCTCTCACTTATATCAATATTTTTCGACATCCTCTTCATGTTTCAACACTATGTG 980
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 ACTCTTCTATCACTTATATCAATATTTTTCGACATCCTCTTCATGTTTCAACACTATGTG 929
Query 981 TTATACCCAGAGAAGAAAGTCTCAAAATCTCCGGAAACTGGTGAGGAATCGAACGAACCA 1040
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 930 TTATACCCAGAGAAGAAAGCCTCAAAATCTCTGGAAACTGGTGAGGAATCGAACGAACCA 989
Query 1041 CTCATTGATTCTTCTCATGAACATGTTTAAAGATCAGATTCTCA--AGA--------GTC 1090
||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 990 CTCATTGATTCTTCTCATGAACATGTTTAAAGATCAGATTCTCTGGAGAATATCAAAGTC 1049
Query 1091 ATTAGTTTCAGCGTTCCCACTGTATATGTTTATATCACAAAAAGGTACAA-ATGTGAGAA 1149
|||||||||||| ||||||||||||||||||| ||||||||||||||||| || | | |
Sbjct 1050 ATTAGTTTCAGCCTTCCCACTGTATATGTTTAAATCACAAAAAGGTACAAGAT-T-ATTA 1107
Query 1150 CTCTTCA-G--ATTGTCGTAATATCAGTCTAATGTATCAAATCAATTATCACAGAAACAG 1206
|| || | |||||| |||||||||| |||||||||| | | ||||||||||||
Sbjct 1108 -TCC-CATGTTATTGTCTTAATATCAGTTTAATGTATCA--T---T-ATCACAGAAACAA 1159
Query 1207 CAAATGTA 1214
||||||||
Sbjct 1160 CAAATGTA 1167
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1238 TATATTTTAAGAAACAAGATGAAAGTTAA 1266
|||||||||||||||||||||||||||||
Sbjct 1172 TATATTTTAAGAAACAAGATGAAAGTTAA 1200
> Ahg913114 jgi|Araly1|913114|Al_scaffold_0001_3368
Length=327
Score = 145 bits (78), Expect = 1e-33
Identities = 172/213 (81%), Gaps = 24/213 (11%)
Strand=Plus/Plus
Query 662 AGCTATCTGTTTCTTCATAGCATTACCTACACACTCTTGGCTATGGCTCATTTCAATCTT 721
|||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 27 AGCTATATGTTTCTTCATAGCATTACCTACACACTCTTGGCTATGGCTCATCTCGATCTT 86
Query 722 CAATTCGATTCAGGTCTTCATGACATGCGTCAAGTACATCCCACAGGCAAAGATGAACTT 781
||| || ||||| ||| |||||| | ||| | ||| | | || || | |
Sbjct 87 CAACTCAATTCAAGTCGTCATGA---G--TCATG-ACAAGC----GTCA--GA--A-CG- 130
Query 782 CACTAGGAAGAGCACAGTCGGGTGGAGCATCGGGAATATTCTTCTCGATTTTACTGGAGG 841
| | | |||||||||||| |||||||||||||||||||||||||| ||| |||||||
Sbjct 131 -A--A--A-GAGCACAGTCGGATGGAGCATCGGGAATATTCTTCTCGACTTTGCTGGAGG 184
Query 842 ACTTGCTAACTA-TCTGCAAATGGTTATACAAT 873
||||||||| || | | ||||||||||||||||
Sbjct 185 ACTTGCTAA-TAATATACAAATGGTTATACAAT 216
> Ahg952321 jgi|Araly1|952321|scaffold_5800005.1
Length=218
Score = 100 bits (54), Expect = 2e-20
Identities = 60/63 (95%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 662 AGCTATCTGTTTCTTCATAGCATTACCTACACACTCTTGGCTATGGCTCATTTCAATCTT 721
|||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 48 AGCTATATGTTTCTTCATAGCATTACCTACACACTCTTGGCTATGGCTCATCTCGATCTT 107
Query 722 CAA 724
|||
Sbjct 108 CAA 110
> Ahg915504 jgi|Araly1|915504|Al_scaffold_0008_255
Length=174
Score = 73.1 bits (39), Expect = 5e-12
Identities = 43/45 (96%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 680 AGCATTACCTACACACTCTTGGCTATGGCTCATTTCAATCTTCAA 724
||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 34 AGCATTACCTACACACTCTTGGCTATGGCTCATCTCGATCTTCAA 78
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47539277499
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5