BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40710.1
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493909 jgi|Araly1|493909|fgenesh2_kg.7__3342__AT5G40710.1 1242 0.0
> Ahg493909 jgi|Araly1|493909|fgenesh2_kg.7__3342__AT5G40710.1
Length=980
Score = 1242 bits (672), Expect = 0.0
Identities = 840/920 (91%), Gaps = 16/920 (2%)
Strand=Plus/Plus
Query 75 AATGCCCATCTCATTGGATTCTCCTCTGCTTCTTCATCTCTTCTCAGTTTTGGGGATTCT 134
|||| |||| |||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 14 AATGTCCATGTCATTGGATTCTCCTCTGCTTCTTGGTTTCTTCTCAGTTTTGGGGATTCT 73
Query 135 CACTTCCCACTTCGATAATTCAACAAAATCTCGAGGGTTTTAAAGATCCTGAAGA-CG-- 191
|||||||||||||||||||| |||| | ||| |||| ||||||||||||| ||| |
Sbjct 74 CACTTCCCACTTCGATAATTAAACAGCACCTCAAGGGATTTAAAGATCCTGTAGATGGAA 133
Query 192 GTTTTCATGAGATTCATTGTTCAAGAGAACGTAGCAGAGTTGCTTGGAAAATCATTCAAG 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 134 GTTTTCATGAGATTCATTGTTCAAGAGAACGTAGCAGAGTTGCTTGGAAAATCATCCAAG 193
Query 252 AGTATCTCATGCCGTATGTGGAAAAGGAGCGGTATCAGTTACCGAGTACTTGTAGAGTTC 311
||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 194 AGTATCTCATGCCATATGTGGAAAAAGAGCGGTATCAGTTACCGAGTAGTTGTAGAGTTC 253
Query 312 ATCGAGACAATGACATTTATAGAGAACAAGAAGAGCACAAA-TTGCGTTCAGATATTAAT 370
|||||||||| |||||||||||||||||||||||||| ||| || | ||||||||| ||
Sbjct 254 ATCGAGACAACGACATTTATAGAGAACAAGAAGAGCATAAAGTT-CATTCAGATATAAAC 312
Query 371 GAGTGGCGTTGTGGATTCTGCAAAAAGGCTTTTTATGAAGAGAAGTATCTCGATAAGCAT 430
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 313 GAGTGGCGTTGTGGATTCTGTAAAAAGGCTTTTTATGAAGAGAAGTACCTCGATAAGCAT 372
Query 431 TTCGATTCGCGCCATTACAATTTACTTAATGCGAGTCATGGTAAATGTCTGTCGGATCTT 490
|||||||| |||||||||||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct 373 TTCGATTCACGCCATTACAATTTGCTTAACGCGAGTCATGGTAAATGTCTGGCGGATCTT 432
Query 491 TGTGGAGCGTTGCATTGTGATCTTGTTGTAGACACAGCTCGGCTTAAGTCCAAGTGTAAT 550
|||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||
Sbjct 433 TGTGGAGCGTTGCATTGTGATCTTGTTGTAAATACAGCTCGGCTTAAGTCTAAGTGTAAT 492
Query 551 CCTGCAGCTGCTGCAAAAAACCGGCACTTATGTGAGAGTTTGGCTAATAGTTGTTTTCCG 610
||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 CCTGCAGCTTCTGCTAGAAACCGGCACTTATGTGAGAGTTTGGCTAATAGTTGTTTTCCG 552
Query 611 GTAAATAAAGGTTCATCAGCCAACCGTCTTCACGATTTCTTCTTGCGTCAGTTCTGCGAT 670
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 553 GTAAATAAAGGTCCATCAGCCAACCGTCTTCACGATTTCTTCTTGCGCCAGTTCTGTGAT 612
Query 671 GCACATACATGTTCAGGAGGATCAAAGCCCTTATCTCAAAAACCAAAGAAGAGGAG-TAT 729
||||||||||||||||||||||||| |||||| |||||||||||||||||||| || ||
Sbjct 613 GCACATACATGTTCAGGAGGATCAAGGCCCTTTTCTCAAAAACCAAAGAAGAG-AGGTA- 670
Query 730 AGTG-TACATTATTTTCTCCATCATCGTTTTGGTAGTGCTTCTTCTCTATTACAGCTTTG 788
||| |||||||| ||||||||| | |||| |||||||||||||||||||||||||||
Sbjct 671 AGTTATACATTATCATCTCCATCAGCACTTTGATAGTGCTTCTTCTCTATTACAGCTTTG 730
Query 789 TCTATTTGTTCCGAAGAGGATTAAAGAGAAGATCTCAAGATTTGAAGCGTATTAGACACA 848
|||||||||||| ||||||||||||||| |||||||||| ||||||||||||||| ||
Sbjct 731 TCTATTTGTTCCAAAGAGGATTAAAGAGGGGATCTCAAGAACTGAAGCGTATTAGACGCA 790
Query 849 ATGGTCTGAAGAAGAAACCCTTCTAAC-CATATCAAGCTTTAGCTTTAATGGCGGCTGAG 907
|||||||||||||||||||||||||| |||||||| |||||||| ||||| | |||||
Sbjct 791 ATGGTCTGAAGAAGAAACCCTTCTAAAGCATATCAACCTTTAGCTATAATG-CATCTGAG 849
Query 908 AGAGAGTACAttttttttCTTTGCAAGATGATTACAATTAGGATCAGATTAGTGCATTTT 967
||||| ||||||||||||||| | ||| ||| | |||||||||||||||||||||||
Sbjct 850 AGAGAATACATTTTTTTTCTTAGGTAGA-GATGA---TTAGGATCAGATTAGTGCATTTT 905
Query 968 GCAACATCCCTTACAATTAT 987
|||| |||||||| | ||||
Sbjct 906 GCAAAATCCCTTATA-TTAT 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39762202431
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5