BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G40780.1 Length=1712 Score E Sequences producing significant alignments: (Bits) Value Ahg947663 jgi|Araly1|947663|scaffold_703892.1 2239 0.0 Ahg921747 jgi|Araly1|921747|scaffold_103028.1 409 4e-113 > Ahg947663 jgi|Araly1|947663|scaffold_703892.1 Length=1388 Score = 2239 bits (1212), Expect = 0.0 Identities = 1334/1393 (96%), Gaps = 7/1393 (1%) Strand=Plus/Plus Query 144 tctctctctctccctctcaa-cctctcACCATGGTAGCTCAAGCTCCTCATGATGATCAT 202 |||||||||||| ||| ||| || |||||||||||||||||||| ||||||||||||| | Sbjct 1 TCTCTCTCTCTCTCTCACAATCC-CTCACCATGGTAGCTCAAGCCCCTCATGATGATCTT 59 Query 203 CAGGATGATGAGAAATTAGCAGCAGCGAGACAAAAAGAGATCGAAGATTGGTTACCAATT 262 |||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| Sbjct 60 CAGGATGATGAGAAATTAGCAGCA---AGACAAAAGGAGATCGATGATTGGTTACCAATT 116 Query 263 ACTTCATCAAGAAATGCAAAGTGGTGGTACTCTGCTTTTCACAATGTCACCGCCATGGTC 322 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 117 ACTTCATCAAGAAATGCTAAGTGGTGGTACTCTGCTTTTCACAATGTCACCGCCATGGTC 176 Query 323 GGTGCCGGAGTTCTTGGACTCCCTTACGCCATGTCTCAGCTCGGATGGGGACCGGGAATT 382 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 177 GGTGCCGGAGTTCTTGGACTCCCTTACGCCATGTCTCAGCTCGGATGGGGACCAGGAATT 236 Query 383 GCAGTGTTGGTTTTGTCATGGGTCATAACACTATACACATTATGGCAAATGGTGGAAATG 442 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 GCAGTGTTGGTTCTATCATGGGTCATAACACTATACACATTATGGCAAATGGTGGAAATG 296 Query 443 CATGAAATGGTTCCTGGAAAGCGTTTTGATCGTTACCATGAGCTCGGACAACACGCGTTT 502 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 297 CATGAAATGGTTCCTGGGAAGCGTTTTGATCGTTACCATGAGCTTGGACAACACGCGTTT 356 Query 503 GGAGAAAAACTCGGTCTTTATATCGTTGTGCCGCAACAATTGATCGTTGAAATCGGTGTT 562 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 GGAGAGAAGCTCGGTCTTTATATCGTTGTGCCGCAACAATTGATCGTTGAAATCGGTGTT 416 Query 563 TGCATCGTTTATATGGTCACTGGAGGCAAATCTTTAAAGAAATTTCATGAGCTTGTTTGT 622 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 TGCATCGTTTATATGGTCACTGGAGGCAAATCTTTAAAGAAATTTCATGAGCTTGTTTGT 476 Query 623 GATGATTGTAAACCAATCAAGCTTACTTATTTCATCATGATCTTTGCTTCGGTTCACTTC 682 || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 477 GACGATTGTAAACCAATCAAACTTACTTATTTCATCATGATCTTTGCTTCTGTTCACTTC 536 Query 683 GTCCTCTCTCATCTTCCTAATTTCAATTCCATCTCCGGCGTTTCTCTTGCTGCTGCCGTT 742 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 537 GTCCTCTCTCATCTTCCCAATTTCAATTCCATCTCCGGCGTTTCTCTTGCTGCTGCCGTT 596 Query 743 ATGTCTCTCAGCTACTCAACAATCGCATGGGCATCATCAGCAAGCAAAGGTGTTCAAGAA 802 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 597 ATGTCTCTCAGCTACTCAACAATCGCATGGGCATCATCAGCAAGCAAAGGCGTTCAAGAA 656 Query 803 GACGTTCAATACGGTTACAAAGCGAAAACAACAGCCGGTACGGTTTTCAATTTCTTCAGC 862 ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 657 GACGTTCAATACGGTTATAAAGCGAAAACAACAGCCGGTACAGTTTTCAATTTCTTCAGC 716 Query 863 GGTTTAGGTGATGTGGCATTTGCTTACGCGGGTCATAATGTGGTCCTTGAGATCCAAGCA 922 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 GGTTTAGGTGATGTGGCATTTGCTTACGCGGGTCATAATGTGGTCCTTGAGATCCAAGCA 776 Query 923 ACTATCCCTTCAACGCCTGAGAAACCCTCAAAAGGTCCCATGTGGAGAGGAGTCATCGTT 982 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 ACTATCCCTTCAACGCCTGAGAAACCCTCAAAAGGTCCCATGTGGAGAGGAGTCATCGTT 836 Query 983 GCTTACATCGTCGTAGCGCTCTGTTATTTCCCCGTGGCTCTCGTTGGATACTACATTTTC 1042 ||||| |||||||| ||||||||||||||||| |||||||| || ||||| || |||||| Sbjct 837 GCTTATATCGTCGTTGCGCTCTGTTATTTCCCTGTGGCTCTAGTCGGATATTATATTTTC 896 Query 1043 GGGAACGGAGTCGAAGATAATATTCTCATGTCACTTAAGAAACCGGCGTGGTTAATCGCC 1102 ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 897 GGGAACGGAGTGGAAGATAACATTCTCATGTCACTTAAGAAACCGGCGTGGTTAATCGCG 956 Query 1103 ACGGCGAACATCTTCGTCGTGATCCATGTCATTGGTAGTTACCAGATATATGCAATGCCG 1162 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 957 ACAGCGAACATCTTCGTCGTGATCCATGTCATCGGTAGTTACCAGATATATGCAATGCCG 1016 Query 1163 GTATTTGATATGATGGAGACTTTATTGGTCAAGAAGCTAAATTTCAGACCAACCACAACT 1222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1017 GTATTTGATATGATGGAGACTTTATTGGTCAAGAAGCTAAATTTCAGACCAACCACAACT 1076 Query 1223 CTTCGGTTCTTTGTCCGTAATTTCTACGTTGCTGCAACTATGTTTGTTGGTATGACGTTT 1282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1077 CTTCGGTTCTTTGTCCGTAATTTCTACGTTGCTGCAACTATGTTTGTTGGTATGACCTTT 1136 Query 1283 CCGTTCTTCGGTGGGCTTTTGGCGTTCTTTGGTGGATTCGCGTTTGCCCCAACCACATAC 1342 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1137 CCGTTCTTCGGAGGGCTTTTGGCGTTCTTTGGTGGATTCGCGTTTGCTCCAACCACATAC 1196 Query 1343 TTCCTCCCTTGCGTCATTTGGTTAGCCATCTACAAACCCAAGAAATACAGCTTGTCTTGG 1402 |||||||||||| |||||||||||||||||||||||||||| |||| | ||||||||||| Sbjct 1197 TTCCTCCCTTGCATCATTTGGTTAGCCATCTACAAACCCAAAAAATTCGGCTTGTCTTGG 1256 Query 1403 TGGGCCAACTGGGTATGCATCGTGTTTGGTCTTTTCTTGATGGTCCTATCGCCAATTGGA 1462 |||||||||||||| || |||||||| ||||||||| | ||||| ||||| || |||||| Sbjct 1257 TGGGCCAACTGGGTTTGTATCGTGTTCGGTCTTTTCCTAATGGTTCTATCACCGATTGGA 1316 Query 1463 GGGCTAAGGACAATCGTTATTCAAGCAAAAGGATACAAGTTTTACTCATAAACGCTATGT 1522 || |||||||||||||||||||||||||||||||||||||||||||| |||| || |||| Sbjct 1317 GGTCTAAGGACAATCGTTATTCAAGCAAAAGGATACAAGTTTTACTCGTAAATGCAATGT 1376 Query 1523 AAT-TCCACTAAT 1534 ||| || |||||| Sbjct 1377 AATATC-ACTAAT 1388 > Ahg921747 jgi|Araly1|921747|scaffold_103028.1 Length=1369 Score = 409 bits (221), Expect = 4e-113 Identities = 861/1161 (74%), Gaps = 80/1161 (7%) Strand=Plus/Plus Query 243 TCGAAGATTGGTTACCAATTACTTCATCAAGAAATGCAAAGTGGTGGTACTCTGCTTTTC 302 |||| ||||||||||| || || || || ||||| || |||||||||||||||||||||| Sbjct 79 TCGACGATTGGTTACCGATCACATCCTCCAGAAACGCTAAGTGGTGGTACTCTGCTTTTC 138 Query 303 ACAATGTCACCGCCATGGTCGGTGCCGGAGTTCTTGGACT--CCCTTACGCCATGTCTCA 360 ||||||||||||||||||| ||||| || ||||| | || |||| |||| ||||| || Sbjct 139 ACAATGTCACCGCCATGGTTGGTGCTGGTGTTCTCAG-CTTGCCCT-ACGCTATGTC-CA 195 Query 361 G-CTCGGATGGGGACCGGGAATTG-C-AGTGTTGGTTTTGTCATGGGTCATAAC-ACTAT 416 |||||||||||||| || | | | | | | ||| |||||||| | ||||| | | | Sbjct 196 ATCTCGGATGGGGACCTGGTGT-GACGATTAT-GGTGATGTCATGGTTAATAACTA-TGT 252 Query 417 ACACATTATGGCAAATGGTGGAAATGCATGAAATGGTTCCTGGAAAGCGTTTTGATCGTT 476 ||||| | |||||||||||||| |||||||| || ||||| || ||| | ||||| | | Sbjct 253 ACACACTGTGGCAAATGGTGGAGATGCATGAGATTGTTCCAGGGAAGAGGCTTGATAGGT 312 Query 477 ACCATGAGCTCGGACAACACGCGTTTGGAGAAAAACTCGGTCTTTATATCGTTGTGCCGC 536 | || ||||| || |||||||| ||||| ||||| || || || | ||||| ||||||| Sbjct 313 ATCACGAGCTAGGTCAACACGCTTTTGGCGAAAAGCTTGGCCTATGGATCGTCGTGCCGC 372 Query 537 AACAA-TTGATCGTTGAAATCGGTGTTTG-CATCGTTTATATGGTCACTGGAGGCAA-AT 593 | || || ||||| || ||||||| | |||||||||||||||||| ||||| | || Sbjct 373 AGCAGCTT-ATCGTGGAGGTCGGTGTA-GACATCGTTTATATGGTCACAGGAGG-AGCAT 429 Query 594 CT-TTAAAGAAATTTCATGAGCTTGTTTGTGATGATTGTAAACCAATCA-AGCTTACTTA 651 | |||| |||| | ||| | || | ||| |||||| ||| ||||| | || || | Sbjct 430 CCCTTAA-GAAAGTCCATCAACTACTCTGTTCTGATTGCAAAGAAATCAGAACT-ACAT- 486 Query 652 TTTC-ATCATGATCTTTGCTTCGGTTCACTTCGTCCTCTCTCATCTTCCTAATTTCAATT 710 ||| ||||||||||||||||| | || || || ||||||| ||||| |||||||| | Sbjct 487 TTTGGATCATGATCTTTGCTTCCATCCATTTTGTTATCTCTCACCTTCCCAATTTCAACT 546 Query 711 CCATCTCCGGCGTTTCTCTTGCTGCTGCCGTTATGTCTCTCAGCT-ACTCAACAATCGCA 769 | |||||| | | || || || || || |||||||| || | || ||||||| ||||| Sbjct 547 CTATCTCCATCATCTCACTCGCCGCGGCTGTTATGTC-CTTAACTTACTCAACTATCGCT 605 Query 770 TGGGCAT-CATCAG--CAAGCAAAGGTGTTCAAGAAGACGTTCAATACGGTTACAA-AGC 825 ||| | | | || | || |||||| || || ||| || | ||| | | | ||| Sbjct 606 TGGAC-TGCTTCGGTGCA--CAAAGGGGTACATCCAGATGTGGACTACACTC-CTAGAGC 661 Query 826 GAAAACA-ACAGCCGGTACGGTTTTCAATTTCTTCA--GCGGTTTAGGTGATGTGGCATT 882 || | || || | || ||||| ||||| | ||| || || |||||||| || Sbjct 662 CTCTACCGAT-GCTGGAAAAGTATTCAACTTCTTGAATGCG-TTG-GGAGATGTGGCTTT 718 Query 883 TGCTTACGCGGGTCATAATGTGGTCCTTG-AGATCCAAGCAACTATCCCTTCAACGCCTG 941 ||| || || ||||| || || || ||| |||| || || || |||||||| || || | Sbjct 719 TGCCTATGCAGGTCACAACGTTGTG-TTGGAGATTCAGGCCACAATCCCTTCGACTCCGG 777 Query 942 AGAAACCCTCAAAAGGTCCCA-TGTGGAGAGGAGTCATCGTTGCTTACATCGTCGTAGCG 1000 ||| || || || | ||||| ||||||||||||| | || || ||||| || || || Sbjct 778 AGATGCCATCCAA-GATCCCAATGTGGAGAGGAGTTGTTGTAGCCTACATTGTAGTCGC- 835 Query 1001 C-TCTGTTATTTCCCCGTGGC-TCTCGTTGGATACTACAT-TTTCGGGAACGGAGTCGAA 1057 | |||| || ||||| || || | || | || || || || ||| || ||| | || || Sbjct 836 CATCTGCTACTTCCCTGTAGCAT-TCCTCGGCTATTATATCTTT-GGAAACAGCGTTGAT 893 Query 1058 GATAATATTCTCATGTCACTTAAGA-AA-CCGG-CGTGG-TTAATCGCCACGGCGAACAT 1113 || || |||||||| ||||| || || || | | ||| ||| | |||| ||| ||||| Sbjct 894 GACAACATTCTCAT--CACTTTGGAGAAGCCTGTC-TGGCTTATT-GCCATGGCTAACAT 949 Query 1114 CTTCGTCGT-GATCCATGTCATTGGTAGTTACCAGATATATGCAATGCCGGTATTTGATA 1172 ||||| || | |||| |||||||| || || ||||||| |||||||||||||||||| | Sbjct 950 GTTCGTGGTTG-TCCACGTCATTGGAAGCTATCAGATATTTGCAATGCCGGTATTTGACA 1008 Query 1173 TGATGGAGACT-TTATTGGTCAAGAAGCTAAATTTCAGA-CCAACCA-CAA-CTCTTCGG 1228 ||||||| || || |||||||| ||| | |||||| || || || ||| ||| || Sbjct 1009 TGATGGAAACCGTT-TTGGTCAAAAAGATGAATTTC-GATCCTTCCTTCAAGCTC--CGC 1064 Query 1229 TTCTTTGTC-CGTAAT-TTCTACGTTGCTG-CAACTATGTTTGTTG-G-TATGACGTTTC 1283 || | | | |||| || ||||| ||| || | ||| | |||| | |||| ||| | Sbjct 1065 TT-TATCACTCGTAGCCTT-TACGTCGCTTTCA-CGATGATCGTTGCGATATG-CGTC-C 1119 Query 1284 CGTTCTTCGGTGGGCTT-TTGGCGTTCTTTGGTGGATTCGCGTTTGCCCCAACCACATAC 1342 |||| |||||||| || ||||| |||||||| |||||||| || |||||||| || ||| Sbjct 1120 CGTTTTTCGGTGGACTACTTGGC-TTCTTTGGAGGATTCGCCTTCGCCCCAACAACTTAC 1178 Query 1343 TTCCTCCCTTGCGTCATTTGG 1363 | ||| || ||| | |||||| Sbjct 1179 TACCTTCCATGCATTATTTGG 1199 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64220153070 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5