BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40800.1
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947661 jgi|Araly1|947661|scaffold_703890.1 1277 0.0
> Ahg947661 jgi|Araly1|947661|scaffold_703890.1
Length=854
Score = 1277 bits (691), Expect = 0.0
Identities = 778/819 (95%), Gaps = 9/819 (1%)
Strand=Plus/Plus
Query 1 ATGGATCAAGATCATGAGTTATGGCGGACGCTAAGATGCGCCGGTAAAGCGCAAGATAAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 24 ATGGATCAAGATCATGAGTTATGGCGGACGCTAAGATGCGCCGGTAAAGCGCAAGATAAG 83
Query 61 ACCTCTGTTGATACTCTCATGCTTAAGTACCGTCCGATCGCTCCAAAGCCGACGACTACT 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 84 ACCTCTGTTGATACTCTCATGCTTAAGTACCGTCCGATCGCTCCCAAGCCGACAACTACT 143
Query 121 GGTCAACCATTGGTCGGAGATACAAGTAGCACGAGAAGGACGAAGAGAAAGTACGTTAGG 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 144 GGTCAACCATTGGTCGGAGATACAAGTAGCACGAGAAGGACTAAGAGAAAGTACGTTAGG 203
Query 181 GTTTCAAAGAATAATAAAGCCACGTGTCGATCAAAGACGAACGGCTTCAGATCTAGCTCA 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 GTTTCCAAGAATAATAAAGCCACGTGTCGATCAAAGACGAACGGCTTCAGATCTAGCTCA 263
Query 241 ACAGATCCGGAGAATGGTCGGGAAGATATCGTCACGCTACAGCTCTTACCGGAGAGATCT 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 264 ACAGATCCGGAGAATGGTCGGGAAGATATCGTCACGCTACAGCTCTTGCCGGAGAGATCT 323
Query 301 ACGCCGTTGAGTTTAGATCATAATAATCTCGATCCAACGGTGGAAACGATAAACGGAGAT 360
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 324 ACGCCGTTGAGTTTGGATCATAATAATCTCGATCCAACGGTGGAAACGATAACCGGAGAT 383
Query 361 GAAACTTGTAATACCGACACGTGGCTCAAGTTTAACGGCGGTGATGACGCGTTGCAACAA 420
||||| | |||| |||||||||||||||||||| |||||||| | || | |
Sbjct 384 GAAAC--------C-GACATGTGGCTCAAGTTTAACGGCGTTGATGACGTGGTGTATCCG 434
Query 421 GTTCCGGTAGAGACGTGGGTGACGGTGGAGTCCGTTAACAGTGGCTTGGTTTCCCATGCG 480
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 435 GTTCCGGTAGAGACGTGGGTGACGGTGGAGTCCGTTAACGGTGGCTCGGTTTCCCATGCG 494
Query 481 GTAGGGTTAACGGACGAAGAGCTCACATATGCTTTAGATAAAGACACGTGTCCTGGTTTC 540
| |||||| |||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct 495 GCAGGGTTGACGGACGAAGAGATGGCGGATGCTTTAGATAAAGACACGTGTCCTGGTTTC 554
Query 541 ATATCGGATGGTTCGAACCGTGTGGTGATGGTTAACGAGGCTTACCGGAGGATAGTAACC 600
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 ATATCGGATGGTAGGAACCGTGTGGTGATGGTTAACGAGGCTTACCGGAGGATAGTAACC 614
Query 601 GGAGACGGCGGATTCGGAAGAGAGGTGATAGTGTGGTTGGTGGTTGACCAAACGGCGACG 660
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 615 GGAGACGGCGGATTCGGAAGAGAGGTGATTGTGTGGTTGGTGGTTGACCAAACGGCGACG 674
Query 661 TTTTGTGACTACCGAACTTTTACGTGTAAGGTGAGAATGGAATACACGTGGCGAGAAACG 720
|||| |||||||||||||||||| |||||||||||| ||||||||||||||||||| |||
Sbjct 675 TTTTATGACTACCGAACTTTTACTTGTAAGGTGAGACTGGAATACACGTGGCGAGAGACG 734
Query 721 AAGTACACTAAAACGTTGCCGTGTGATGTGTGGAAGATGGAGTTTGGTGGATTTGCATGG 780
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 AAGTACACTAAAACGGTGCCGTGTGATGTGTGGAAGATGGAGTTTGGTGGATTTGCATGG 794
Query 781 AGGTTGGATACTACTGCAGCTTTAACTCTTTGGCTTTGA 819
|||||||||||||||||||||||||||||||||||||||
Sbjct 795 AGGTTGGATACTACTGCAGCTTTAACTCTTTGGCTTTGA 833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30269596098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5