BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40880.1
Length=2135
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493888 jgi|Araly1|493888|fgenesh2_kg.7__3321__AT5G40880.1 2488 0.0
Ahg932917 jgi|Araly1|932917|scaffold_400905.1 758 0.0
Ahg902608 jgi|Araly1|902608|Al_scaffold_0004_3258 460 1e-128
> Ahg493888 jgi|Araly1|493888|fgenesh2_kg.7__3321__AT5G40880.1
Length=1928
Score = 2488 bits (1347), Expect = 0.0
Identities = 1769/1961 (90%), Gaps = 75/1961 (4%)
Strand=Plus/Plus
Query 67 GTTCGAAACCGTTCCCTAATCGAAGATCTAGATTCAACATACGTTTTATCTCTCAGGTTT 126
|||||||| ||||| |||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 27 GTTCGAAATCGTTCTCTAATCGAAGATCTAGATTCTACATACGTTTGATCTCTCAGGTTT 86
Query 127 GCTTCTTCTTCGACTACGTTTTCTCCGCGATTATGATGATGCCTTCTTCTTCCTGCTTTC 186
|||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 87 GCTTCTTCTTCGACTA-----------CGATTATGATGATG---TCTTCTTCCTGCTTTC 132
Query 187 ACTTTGGGTTGCGTTTCTTCATCTCCTCGATTCGCGATCCTCCTATTCGCATCGATACCC 246
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 133 ACTTTGGGTTGGGTTTCTTCATCTCCTCGATTCTCGATCCTCCTATTCGCATCGATACCC 192
Query 247 AGAGATCTAGGGTTTCCACCGATATGGATATGGATAAATCTTAGGGTTTCACCGATAAGG 306
||| ||||||||||||||||| | | | | |||| || | ||| ||
Sbjct 193 AGAAATCTAGGGTTTCCACCG-T-TC-ACC-G-ATAA------GGAT------GAT--GG 233
Query 307 ATTATGGATTCGAGTTTCTCTTCTATGTACATT-GTCGGAGCTACATCTTCTCTTCTTGT 365
||| ||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 234 ATT-------CGAGTTTCTCTTCTATGTACATTCGTCGGAGCTAGATCTTCTCTTCTTGT 286
Query 366 TGTTAGTGTTA------GGGTTTTGA-ATAGGT-TTTAGGTGATGA-ATT-A-TAGGTTT 414
||||| ||||| ||||||||| || || ||||||| | || | | | | |||
Sbjct 287 TGTTATTGTTATATTTAGGGTTTTGATAT-GGCATTTAGGTTAGGATACTGAAT-GGT-- 342
Query 415 AGAGTTCTGAA-TTAGAGATTTATTTGGTTTTTTCTGTGGACGTGGTGCTCTATGATACC 473
|| || |||| ||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 343 -GA-TTGTGAAATTAGAGATTTATTTGGTTTTT-CTGTGGACGTGATGCTCTATGATACC 399
Query 474 TGGATTGAATTTGGGGTTACAGACAGAAGAATGTGTTGCTTTTGATTCTCTAGCGATTGG 533
|||||||||||| |||||||||||||| || | |||||||||||||||||||||||||||
Sbjct 400 TGGATTGAATTTAGGGTTACAGACAGAGGA-T-TGTTGCTTTTGATTCTCTAGCGATTGG 457
Query 534 GG-AATTCAGAAACTCCTTGCTTCTGGACTTGTTACCCTTGTGAAAATTTATGTATGGGT 592
|| |||||||||||| ||| ||||||||||||| |||||| |||||||||||||||||
Sbjct 458 GGGAATTCAGAAACTACTTACTTCTGGACTTGTCACCCTTCTGAAAATTTATGTATGG-- 515
Query 593 CATCAGTCATCATGGATGAAGCAAACAGTTATCGACTCTGTGGTTCAGTCTTCTAAAGTT 652
|||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 516 -ATCA-TCAT---GGATGAAGCAA-CAGTTATCGACTCTGTGGTTCAGTCTTCTAAAGTT 569
Query 653 GGTGTTTTCTCAATGTTTAGTATGGATTACAAGGCGCCAAGGAAATACTCACACGGAAGG 712
||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 570 GGTATTTTCTCAATGTTTAGTATGGATTACAAGGCGCCAAGGAGGTACTCAAACGGAAGG 629
Query 713 AATTTTGGAGTTGCGAGACAGCAAGATTTTGCAGCAGATATAGTTACGAGAAGACCTTAT 772
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 630 AATTTCGGAGTTGCTAGACAGCAAGATTTCGCAGCAGATATAGTTACGAGAAGACCTTAT 689
Query 773 GCCCCGTATGACAATGGTATGAAGAAAGGTCCTAATAAGTTGTCAAGGAATCTGGTTTGG 832
||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 690 GCCCCGTATAACAATGGAATGAAGAAAGGTCCAAATAATTTGTCAAGGAATCTGGTTTGG 749
Query 833 ACGTCAAAAGAGTACAAATCACCAGAGGGAAACAGGCCAAGGCAGAATGCAGCCAATGGG 892
|||||||||||||||||| ||||||| || | |||||| || |||||||||||||||||
Sbjct 750 ACGTCAAAAGAGTACAAAGCACCAGATGGCGATAGGCCACGGAAGAATGCAGCCAATGGG 809
Query 893 TCAGCGAAACCACAAGTTATAGGCACAGGACATCGTGTATCAAACCAGCCGAGGAAGAAT 952
||| ||||||||| |||| |||||||||||||| |||| ||||||||||||||||||| |
Sbjct 810 TCAACGAAACCACCAGTTTTAGGCACAGGACATTGTGTGTCAAACCAGCCGAGGAAGAGT 869
Query 953 GCTGTGTATGGGCCAAGGAGCTCTTCTCTTTCAGACACCAGAGGTTGTGGGCCGAGAC-T 1011
||||| ||||||||||||||||||||| ||||||||||||||||||| ||| ||||| |
Sbjct 870 GCTGTATATGGGCCAAGGAGCTCTTCTATTTCAGACACCAGAGGTTGGGGGTCGAGAGAT 929
Query 1012 CAATGGCAGTCCCAAAAAGAGTGTGTGTAATTTTTGGAAAGATGGAAACTGCAAAAAGGG 1071
|| ||||||| |||| |||||| ||||| | |||||||| |||||||||||||| |||
Sbjct 930 -AACAGCAGTCCTAAAAGGAGTGTATGTAAGTATTGGAAAGCTGGAAACTGCAAAAGGGG 988
Query 1072 CGAGAAATGCCAGTTCTTACACTCTTGGTCTTGTTTTCCTGGACTGGCCATGGTAGCTGC 1131
||| | ||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 989 TGAGCAGTGCCAGTTCTTACACTCTTGGTCTTGTTTCCCTGGATTGGCCATGGTAGCTGC 1048
Query 1132 TCTTGAAGGACACAAGAATGATATTAAGGGAATCGCCCTTCCTCAGGGTTCAGATAAACT 1191
|||||||||||||||||| ||| | ||||| ||||| || ||||||||||||||||||||
Sbjct 1049 TCTTGAAGGACACAAGAAGGATCTAAAGGGGATCGCGCTCCCTCAGGGTTCAGATAAACT 1108
Query 1192 CTTTTCAGTCAGTGGTGATGGTACATTGCTAATTTGGGACTGCAATTCTGGTCAGTGTGT 1251
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1109 CTTTTCAGTCAGTAGTGATGGTACATTGCGAATTTGGGACTGCAATTCTGGTCAGTGTGT 1168
Query 1252 TCGAT-CCATCAACCTCCAGGCAGAAGCAGGGTCTCTAATTAGTGAAGGACCATGGGTTT 1310
| || |||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1169 AC-ATTCCATCAACCTCCAGGCAGAAGCAGGGTCTCTAATCAGTGAAGGCCCATGGGTTT 1227
Query 1311 TCCTTGGCTTGCCAAACGCTGTAAAGGCTTTTAACGTTCAAAACAGTAAAGATGTGCATC 1370
|||||||||||||||| ||||||||||||||||| ||||||| |||||||||| ||||||
Sbjct 1228 TCCTTGGCTTGCCAAATGCTGTAAAGGCTTTTAATGTTCAAACCAGTAAAGATTTGCATC 1287
Query 1371 TTGAAGGGGTGGTTGGTCAGGTGCATGCAATGACTGCTGCAAACGGAATGCTTTTTGCTG 1430
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1288 TTGAAGGGGTGGTTGGTCAGGTGCATGCAATGACTGTTGCAAACGGAATGCTTTTTGCTG 1347
Query 1431 GAACAAGTTCTGGTAGTATATTAGTCTGGAAAGCTACAGACTCGGAGTCTGATCCATTCA 1490
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1348 GAACAAGTTCTGGTAGTATATTGGTCTGGAAAGCTACAGACTCTGAGTCTGATCCATTCA 1407
Query 1491 AATACTTGACATCTCTCGAGGGACATCATAGTGGTGAAGTCACTTGTTTTGTTGTTGGAG 1550
| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1408 AGTACTTGACATCTCTAGAGGGACATCATAGTGGTGACGTCACTTGTTTTGTTGTTGGTG 1467
Query 1551 GTGAAGTGCTATACTCTGGTTCTGTCGATAAAACAATAAAGGTGTGGGATCTCAACACCT 1610
|| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1468 GTCAACTGCTATACTCTGGTTCTGTCGATAGAACAATAAAGGTGTGGGATCTCAACACCC 1527
Query 1611 TGCAATGTAGAATGACCCTGAAGCAACATATCGGCACTGTCACTTCACTCTTATGTTGGG 1670
|||| |||| |||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1528 TGCAGTGTATAATGACCCTGAAGCAACATACCGGCACTGTCACATCACTCTTATGTTGGG 1587
Query 1671 ACAAGTGTCTGATATCGTCTTCCTTGGATGGGACCATAAAACTTTGGGCTTGTTCTGAAA 1730
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1588 ACAAGTGTCTGATATCATCTTCCTTGGATGGGACCATAAAAGTTTGGGCTTGTTCTGAAA 1647
Query 1731 ATGAAAGTTTGAAAGTTGTTCAAACTCGCAAACAAGAACTGAGTGTTCATACTCTCTGTG 1790
||| ||| ||||||||||||||||||||||||||||||| |||||||||| |||| ||||
Sbjct 1648 ATGGAAGCTTGAAAGTTGTTCAAACTCGCAAACAAGAACAGAGTGTTCATGCTCTTTGTG 1707
Query 1791 GAATGCACGATGCAGAGGCCAAACCGATCATGTTTTGCTCTTACCAAAATGGAGCAGTTG 1850
| ||||| ||||||||||||||||||||||| || |||||||||||||||||| ||||||
Sbjct 1708 GGATGCATGATGCAGAGGCCAAACCGATCATATTCTGCTCTTACCAAAATGGAACAGTTG 1767
Query 1851 GCATTTTCGACCTACCATCTTTTGAAGAAAGAGGAAAGATGTTCTCTACGCAGACGATCT 1910
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1768 GCATTTTCGATCTACCATCTTTTGAAGAAAGAGGAAAAATGTTCTCTACGCAGACGATCG 1827
Query 1911 GCACACTTACAATTGGTCCTGGAGGATTGTTATTCAGTGGAGACAAGAGTGGGAACTTGC 1970
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1828 GCACACTCACAATTGGTCCTGAAGGATTGTTATTCAGTGGAGACAAGAGTGGGAACTTGC 1887
Query 1971 GTGTATGGAGCTTAGCTTCTGGCACCAAAGTTTAGTCGTTT 2011
||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1888 GTGTATGGAGCTTAGCTGCTGGCAACAAAGTTTAGTCGTTT 1928
> Ahg932917 jgi|Araly1|932917|scaffold_400905.1
Length=714
Score = 758 bits (410), Expect = 0.0
Identities = 627/725 (86%), Gaps = 42/725 (6%)
Strand=Plus/Plus
Query 1029 AGAGTGTGTGTAATTTTTGGAAAGATGGAAACTGCAAAAAGGGCGAGAAATGCCAGTTCT 1088
||||||||||||| | ||||||||||||||||||||||| |||| || ||||||||||||
Sbjct 27 AGAGTGTGTGTAAGTATTGGAAAGATGGAAACTGCAAAAGGGGCAAGCAATGCCAGTTCT 86
Query 1089 TACACTCTTGGTCTTGTTTTCCTGGACTGGCCATGGTAGCTGCTCTTGAAGGACACAAGA 1148
||||||||||||||||||| |||||| ||| || ||| ||||||| |||||| | ||||
Sbjct 87 TACACTCTTGGTCTTGTTTCCCTGGATTGGTTATAGTACCTGCTCTCGAAGGAAAAAAGA 146
Query 1149 ATGATA-TTAAGGGAATCGCCCTTCCTCAGGGTTCAGATAAACTCTTTTCAGTCAGTGGT 1207
| || | | ||||| || | ||||||||||| |||||||||||||||||||| ||| ||
Sbjct 147 AGGA-ACTAAAGGGGATTACGCTTCCTCAGGGCTCAGATAAACTCTTTTCAGTTAGTAGT 205
Query 1208 GATGGTACATTGC-TAATTTGGGACTGCAATTCTGGTCAGTGTGTTCGATCCATCAACCT 1266
||||||||||||| | |||||||||||||| | || || | |
Sbjct 206 GATGGTACATTGCGT-ATTTGGGACTGCAA---T--TC----TG---G-----------T 241
Query 1267 CCAGGCAGAAGCAGGGTCTCTAATTAGTGAAGGACCATGGGTTTTCCTTGGCTTGCCAAA 1326
|||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||
Sbjct 242 -CAGGCAGAAGCAGGGTCTCTAATTAGTGAAAGCCCATGGGTTTTCCTTGGCTTGCTAAA 300
Query 1327 CGCTGTAAAGGCTTTTAACGTTCAAAACAGTAAAGATGTGCATCTTGAAGGGGTGGTTGG 1386
|||||||||||||| ||| | ||||| || ||||||| | |||||| |||||||||||||
Sbjct 301 CGCTGTAAAGGCTTATAATGATCAAACCAATAAAGATTTACATCTTCAAGGGGTGGTTGG 360
Query 1387 TCAGGTGCATGCAATGACTGCTGCAAACGGAATGCTTTTTGCTGGAACAAGTTCTGGTAG 1446
||| ||||||||||||| || ||||||||||||||||||| |||||||||||||||||||
Sbjct 361 TCAAGTGCATGCAATGATTGTTGCAAACGGAATGCTTTTTTCTGGAACAAGTTCTGGTAG 420
Query 1447 TATATTAGTCTGGAAAGCTACAGACTCGGAGTCTGATCCATTCAAATACTTGACATCTCT 1506
||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 TATATTAGTATTGAAAGCTACAGACTCTGAGTCTGATCCATTCAAATACTTGACATCTCT 480
Query 1507 CGA-GG--GACATCATAGTGGTGAAGTCACTTGTTTTGTTGTTGGAGGTGAAGTGCTATA 1563
| | || ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 481 CCAGGGACGACATCATAGTGGTGAAGTCACTTGTTTTGTTGTTGGAGGTCAACTGCTATA 540
Query 1564 CTCTGGTTCTGTCGATAAAACAATAAAGGTGTGGGATCTCAACACCTTGCAATGTAGAAT 1623
|| | ||| |||||||| |||||||||||||||||||||||||||| |||| |||| |||
Sbjct 541 CTATAGTTATGTCGATAGAACAATAAAGGTGTGGGATCTCAACACCCTGCAGTGTATAAT 600
Query 1624 GACCCTGAAGCAACATATCGGCACTGTCACTTCACTCTTATGTTGGGACAAGTGTCTGAT 1683
|||||||||||| | | || || | | ||||||||||||||||||| ||||||||
Sbjct 601 GACCCTGAAGCA-C-TGTC---AC----A-T-CACTCTTATGTTGGGACAAATGTCTGAT 649
Query 1684 ATCGTCTTCCTTGGATGGGACCATAAAACTTTGGGCTTGTTCTGAAAATGAAAGTTTGAA 1743
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||
Sbjct 650 ATCGTCTTCCTTGGATGGGACCATAAAAGTTTGGGCTTGTTCTGAAAATGGAAGCTTGAA 709
Query 1744 AGTTG 1748
|||||
Sbjct 710 AGTTG 714
> Ahg902608 jgi|Araly1|902608|Al_scaffold_0004_3258
Length=462
Score = 460 bits (249), Expect = 1e-128
Identities = 396/466 (85%), Gaps = 14/466 (3%)
Strand=Plus/Plus
Query 1121 ATGGTAGCTGCTCTTGAAGGACACAAGAATGATATTAAGGGAATCGCCCTTCCTCAGGGT 1180
||||||||| ||||| ||||||||||||| ||||| ||||| || ||||| ||||| |||
Sbjct 1 ATGGTAGCTACTCTTCAAGGACACAAGAAGGATATAAAGGGGATTGCCCTCCCTCAAGGT 60
Query 1181 TCAGATAAACTCTTTTCAGTCAGTGGTGATGGTACATTGCTAATTTGGGACTGCAATTCT 1240
|| |||||||||| |||| ||||||||||||| | ||| ||| ||||||||| || ||
Sbjct 61 TCTGATAAACTCTACTCAGCCAGTGGTGATGGTGCTTTGAGAATATGGGACTGCCATACT 120
Query 1241 GGTCAGTGTGTTCGAT-CCATCAACCTCCAGGCAGAAGCAGGGTCTCTAATTAGTGAAGG 1299
||||| ||||| | || ||||||||||||||||||||||||||||| ||||||||| |
Sbjct 121 GGTCAATGTGTGC-ATGAGATCAACCTCCAGGCAGAAGCAGGGTCTCTGATTAGTGAAAG 179
Query 1300 ACCATGGGTTTTCCTTGGCTTGCCAAACGCTGTAAAGGCTTTTAACGTTCAAAACAGTAA 1359
||| ||||||||||||||||||||||| ||||||||||||||||| ||||| | | ||||
Sbjct 180 ACCTTGGGTTTTCCTTGGCTTGCCAAATGCTGTAAAGGCTTTTAATGTTCAGACCTGTAA 239
Query 1360 AGATGTGCATCTTGAAGGGGT-GGTTGG---TCAGGTGCATGCAAT-GACTGCTGCAAAC 1414
|||| ||||||| || || | ||| || ||||||| ||||||| | || || ||||
Sbjct 240 AGATTTGCATCTC-AATGGTTCGGTAGGAGGTCAGGTGAATGCAATTG-CTATTGGAAAC 297
Query 1415 GGAATGCTTTTTGCTGGAACAAGTTCTGGTAGTATATTAGTCTGGAAAGCTACAGACTCG 1474
||||||||||||||||| ||||||||||||||||||| ||||||||||| ||| ||| |
Sbjct 298 GGAATGCTTTTTGCTGGGACAAGTTCTGGTAGTATATCAGTCTGGAAAGGTACTGACACC 357
Query 1475 GAGTCTGATCCATTCAAATACTTGACATCTCTCGAGGGACATCATAGTGGTGAAGTCACT 1534
||||||||||| ||||||||| | |||||||||||||||||| | ||| ||||||||
Sbjct 358 GAGTCTGATCCTTTCAAATACCTCACATCTCTCGAGGGACAT-A--GTGATGAAGTCAAG 414
Query 1535 TGTTTTGTTGTTGGAGGTGA-AGTGCTATACTCTGGTTCTGTCGAT 1579
||||| |||||||||||| | || ||| |||||||||||||| |||
Sbjct 415 TGTTTCGTTGTTGGAGGTCAGAG-GCTTTACTCTGGTTCTGTGGAT 459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80332326705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5