BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40890.1
Length=2947
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493886 jgi|Araly1|493886|fgenesh2_kg.7__3319__AT5G40890.1 4394 0.0
Ahg484500 jgi|Araly1|484500|fgenesh2_kg.5__492__AT3G27170.1 1954 0.0
> Ahg493886 jgi|Araly1|493886|fgenesh2_kg.7__3319__AT5G40890.1
Length=2890
Score = 4394 bits (2379), Expect = 0.0
Identities = 2742/2913 (94%), Gaps = 42/2913 (1%)
Strand=Plus/Plus
Query 10 CTCCTCACAACAAATAACATTTAAATTAAATGTTATGTTTGTATCACCATACATATAATG 69
||||||||||||||||| ||| ||||||||||||||| | || || || |||||
Sbjct 1 CTCCTCACAACAAATAAAATTCAAATTAAATGTTATG--T-AAT-GGTGTATAT-TAATG 55
Query 70 GTGTAT--ATTG-ATGCATGCATGT-ATCATATGTAGAGAGAGATCTATAAAGCTTCATA 125
|| || | || || ||| |||| || |||||| ||||||||||||||||||||| |
Sbjct 56 ATGCATGCA-TGTAT-CAT--ATGTGATTATATGT--AGAGAGATCTATAAAGCTTCA-A 108
Query 126 AA-AGTGTTT-CTCTAGAAAAAACGACAAAATTCGCAGAGAAAATCCAAACCAAAAGTAG 183
|| ||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 109 AAGAGTGTTTCCTCTAGAAAAAACGACAAAATTCACAGAG-AAATCCAAACCAAAAGTAG 167
Query 184 TTTTGTAACAGAGAGATAGATAGAAAGCTCTTGAAGATCTAACCAAAATCTACTTTTGtt 243
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 168 TTTTGTAACAGAGAGATATATAGAAAGCTCTTGAAGATCTAACCAAAATCTACTTTTGTT 227
Query 244 cttcttcttcttcttTTCATAAATTTTCGGAGTGGTCCTATTTATTGTTTCTTGGATCAT 303
|||||| | || ||||| || |||||| |||||||||| | |||||| ||||||||||
Sbjct 228 GTTCTTC-T-TT-TTTTCCTATATTTTCTGAGTGGTCCTCTATATTGTCACTTGGATCAT 284
Query 304 TAGAGAGACAGCTATCGATGGATGAAGATGGAAACTTGCAGATTAGTAATAGTAATTACA 363
||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 TAGAGAGGGAGTTACCGATGGATGAAGATGGAAACTTGCAGATTAGTAATAGTAATTACA 344
Query 364 ATGGAGAAGAAGAAG--G-AGAAGATCCAGAGAACAACACTTTGAATCAACCACTGCTTA 420
||||||||||||||| | || |||||||||||||||||||||||| ||||| || ||||
Sbjct 345 ATGGAGAAGAAGAAGAAGAAGGAGATCCAGAGAACAACACTTTGAACCAACCTCTCCTTA 404
Query 421 AGAGACATAGAACTCTTTCTTCAACTCCTCTTGCTTTGGTCGGTGCCAAGGTTTCACACA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 AGAGACATAGAACTCTTTCTTCAACTCCTCTTGCTTTGGTCGGTGCCAAGGTTTCACACA 464
Query 481 TCGAGAGTTTAGATTATGAAATAAACGAGAATGATCTGTTCAAGCATGACTGGAGAAGCA 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 465 TCGAGAGTTTAGATTATGAAATAAATGAGAATGATCTGTTCAAGCATGACTGGAGAAGCA 524
Query 541 GATCAAAAGCACAAGTGTTTCAATACATA-TTCTTAAAATGGACATTAGCTTGTCTTGTT 599
|||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 525 GATCAAAAACACAAGTGTTTCAATACATATTTC-TAAAATGGACATTAGCTTGTCTTGTT 583
Query 600 GGTCTCTTCACTGGTCTTATCGCTACTCTCATCAACCTTGCTGTCGAAAACATCGCCGGT 659
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 584 GGTCTCTTCACTGGTCTTATCGCTACTCTCATCAACCTCGCTATCGAAAACATCGCCGGT 643
Query 660 TACAAACTTCTCGCCGTCGGCTACTACATTGCTCAAGATAGGTTTTGGACAGGTCTGATG 719
||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||
Sbjct 644 TACAAACTTCTCGCCGTAGGCTACTACATCGGTCAAGATAGGTTTTGGACAGGTCTGATG 703
Query 720 GTCTTTACGGGGGCGAATTTGGGTCTGACTTTGGTGGCGACAGTACTTGTTGTTTACTTT 779
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 ATCTTTACGGGGGCAAATTTGGGTCTGACTTTGGTGGCGACAGTACTTGTTGTTTACTTT 763
Query 780 GCTCCTACGGCGGCTGGTCCGGGGATCCCTGAGATTAAAGCTTACCTTAATGGCATTGAC 839
||||||||||| |||||||| || || ||||||||||||||||| |||||||||||||||
Sbjct 764 GCTCCTACGGCCGCTGGTCCCGGAATTCCTGAGATTAAAGCTTATCTTAATGGCATTGAC 823
Query 840 ACTCCCAATATGTTTGGTTTTACCACCATGATGGTTAAGATTGTTGGAAGTATTGGAGCG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 ACTCCCAATATGTTTGGTTTTACCACCATGATGGTTAAGATTGTTGGAAGTATTGGAGCG 883
Query 900 GTTGCAGCTGGACTTGATCTTGGTAAAGAAGGGCCATTGGTTCATATTGGAAGTTGCATA 959
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 884 GTTGCAGCTGGACTTGATCTTGGTAAAGAAGGGCCTTTGGTTCATATTGGAAGCTGCATT 943
Query 960 GCTTCTTTGCTTGGTCAAGGTGGTCCAGATAATCACAGAATCAAATGGAGATGGCTTCGT 1019
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 944 GCTTCTTTGCTTGGTCAAGGTGGTCCAGATAATCACAGAATCAAGTGGAGATGGCTTCGT 1003
Query 1020 TACTTCAACAACGATAGAGATCGAAGAGATCTTATTACATGTGGATCTGCCTCTGGAGTA 1079
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1004 TACTTCAACAACGATAGAGATCGAAGAGATCTTATTACCTGTGGATCTGCCTCTGGAGTA 1063
Query 1080 TGTGCTGCTTTCAGGTCACCAGTAGGAGGAGTACTTTTCGCTCTTGAGGAAGTCGCTACG 1139
||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 1064 TGTGCAGCTTTCAGGTCACCAGTAGGAGGAGTGCTTTTCGCACTTGAGGAAGTTGCTACG 1123
Query 1140 TGGTGGAGAAGCGCTCTCTTGTGGAGAACATTCTTCAGTACAGCCGTTGTGGTGGTTGTA 1199
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1124 TGGTGGAGAAGTGCTCTCTTGTGGAGGACATTCTTCAGTACAGCCGTTGTGGTGGTTGTA 1183
Query 1200 TTAAGAGCGTTCATTGAGATTTGTAACTCCGGGAAATGCGGACTTTTCGGCTCAGGAGGA 1259
| ||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1184 CTGAGAGCATTCATTGAAATTTGTAATTCCGGGAAATGCGGGCTTTTCGGCTCAGGAGGA 1243
Query 1260 CTCATTATGTTCGATGTGAGTCATGTAGAGGTTAGGTACCACGCAGCAGATATAATCCCA 1319
||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1244 CTCATTATGTTTGATGTAAGTCATGTAGAGGTTAGGTACCACGCAGCTGATATAATCCCG 1303
Query 1320 GTCACATTGATTGGAGTCTTTGGTGGCATTCTTGGAAGCTTGTACAATCATCTTCTGCAT 1379
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1304 GTCACACTGATTGGAGTCTTTGGTGGCATTCTTGGAAGCTTGTACAATCATCTTTTGCAT 1363
Query 1380 AAAGTTCTCCGGCTTTACAATCTCATCAACCAGAAGGGAAAGATTCATAAGGTGCTTCTA 1439
||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 1364 AAAGTTCTCCGGCTTTACAATCTCATCAATCAGAAGGGTAAGATTCACAAGGTGCTTCTA 1423
Query 1440 AGTCTTGGGGTATCTCTATTCACATCAGTTTGCTTGTTCGGTCTTCCTTTCTTAGCGGAA 1499
|||||||||||||||||||| || || |||||||||| ||||||||||||||| ||||||
Sbjct 1424 AGTCTTGGGGTATCTCTATTTACCTCGGTTTGCTTGTACGGTCTTCCTTTCTTGGCGGAA 1483
Query 1500 TGCAAGCCTTGTGATCCTTCTATAGACGAGATATGTCCAACAAACGGAAGATCAGGAAAT 1559
|||||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 1484 TGCAAGCCTTGTAATCCTTCGATAGACGAGATGTGTCCAACAAATGGAAGATCAGGAAAC 1543
Query 1560 TTCAAGCAATTCAACTGTCCAAATGGTTATTACAACGATCTATCCACTCTGCTTCTCACA 1619
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1544 TTCAAGCAATTCAACTGTCCAAATGGTTATTACAACGATCTAGCTACTCTGCTTCTCACA 1603
Query 1620 ACCAATGATGATGCAGTCAGAAACATTTTCTCTTCAAACACTCCTAATGAGTTTGGCATG 1679
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1604 ACCAATGATGATGCAGTCAGAAACATTTTCTCTTCAAACACTCCTAATGAGTTTGGTATG 1663
Query 1680 GTTTCTCTCTGGATATTCTTTGGCCTCTACTGCATTTTGGGTCTTATAACATTCGGTATA 1739
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1664 GTTTCTCTCTGGATATTCTTTGGCCTCTACTGCATTTTGGGTCTTATCACATTCGGTATA 1723
Query 1740 GCGACACCGTCGGGTCTCTTCCTACCGATTATCCTCATGGGTTCTGCATACGGTAGGATG 1799
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1724 GCGACACCATCGGGTCTCTTCCTACCGATTATCCTCATGGGTTCTGCATACGGTCGGATG 1783
Query 1800 CTAGGCACAGCAATGGGGTCTTACACAAACATAGATCAAGGGCTTTACGCGGTTCTTGGT 1859
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1784 CTAGGCACAGCAATGGGATCTTACACAAACATAGATCAAGGGCTTTACGCGGTTCTTGGT 1843
Query 1860 GCAGCTTCACTCATGGCTGGTTCAATGAGAATGACTGTTTCACTCTGTGTTATATTTCTG 1919
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1844 GCAGCTTCACTCATGGCTGGTTCAATGAGAATGACAGTTTCACTCTGTGTTATATTCCTT 1903
Query 1920 GAACTCACCAACAACCTTCTTTTGTTGCCCATTACAATGTTTGTGCTTCTGATAGCTAAA 1979
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1904 GAACTCACCAACAACCTTCTTTTGTTACCCATTACAATGTTTGTGCTTCTGATAGCTAAA 1963
Query 1980 ACAGTAGGTGACAGCTTCAATCTAAGTATCTACGAGATCATTCTCCATCTTAAGGGCTTA 2039
||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1964 ACAGTTGGAGACAGCTTCAATCTAAGTATCTACGAGATCATTCTCCATCTAAAGGGCTTA 2023
Query 2040 CCTTTCTTGGAAGCAAATCCAGAGCCGTGGATGAGGAATCTCACTGTAGGTGAGCTTAAC 2099
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2024 CCGTTCTTGGAAGCAAATCCAGAGCCATGGATGAGGAATCTCACTGTAGGTGAGCTTAAC 2083
Query 2100 GACGCTAAGCCTCCGGTTGTAACACTTAACGGAGTAGAAAAAGTGGCAAATATAGTCGAT 2159
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 2084 GACGCTAAGCCTCCGGTTGTAACACTTAACGGAGTAGAGAAAGTCGCGAATATAGTCGAT 2143
Query 2160 GTACTAAGGAACACAACGCATAACGCATTCCCAGTCTTGGATGGAGCAGATCAAAACACT 2219
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 2144 GTACTAAGGAACACAACGCATAACGCATTCCCAGTCTTGGATGGAACAGATCAAACCACT 2203
Query 2220 GGCACAGAGCTCCATGGTCTGATCCTAAGAGCTCACCTTGTGAAAGTTCTGAAAAAGAGA 2279
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2204 GGTACAGAGCTCCATGGTCTGATCCTAAGAGCTCACCTTGTGAAAGTTCTGAAAAAGAGA 2263
Query 2280 TGGTTCTTGAATGAGAAAAGGAGAACAGAAGAGTGGGAAGTTAGGGAAAAGTTCACACCG 2339
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 2264 TGGTTCTTGAATGAGAAAAGGAGAACAGAAGAATGGGAAGTTCGGGAAAAGTTCACACCG 2323
Query 2340 GTTGAATTAGCTGAGAGAGAAGATAACTTCGATGATGTTGCAATCACAAGCTCAGAGATG 2399
|||||||||||||||||||||||||| ||||| ||||||||||| | |||||||||||||
Sbjct 2324 GTTGAATTAGCTGAGAGAGAAGATAATTTCGACGATGTTGCAATTATAAGCTCAGAGATG 2383
Query 2400 CAATTGTATGTTGATCTTCATCCTTTGACCAACACTACACCTTACACAGTGGTGCAAAGT 2459
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2384 CAATTGTATGTTGATCTTCATCCTTTGACCAACACTACACCTTACACAGTGGTGCAGAGT 2443
Query 2460 ATGTCAGTGGCTAAAGCTTTGGTTCTGTTCCGGTCAGTGGGTCTCAGACATTTACTGGTG 2519
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 2444 ATGTCAGTGGCTAAAGCTTTGGTGCTGTTCCGGTCAGTGGGTCTCAGACATTTGCTGGTT 2503
Query 2520 GTTCCCAAGATTCAAGCTTCAGGGATGTCACCTGTGATAGGGATCTTAACAAGGCAAGAT 2579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2504 GTTCCCAAGATTCAAGCTTCAGGGATGTCACCTGTGATAGGGATCTTAACAAGGCAAGAT 2563
Query 2580 CTCAGGGCTTATAACATTCTACAAGCATTTCCTCACTTGGATAAACACAAAAGTGGAAAA 2639
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2564 CTAAGGGCTTATAACATTCTACAAGCATTTCCTCACTTGGATAAACACAAAAGTGGAAAA 2623
Query 2640 GCTA-GATGAATAAGCCAAAA-TGCAAAGA-GCGTTCACTATTATTTGGTTTGTGTGATT 2696
|| |||||||||||||||| |||||||| | |||| |||||| |||||||||||||||
Sbjct 2624 -CTTCGATGAATAAGCCAAAACTGCAAAGAAG-GTTCGCTATTACTTGGTTTGTGTGATT 2681
Query 2697 CGTGTGT-CTTTCCACATTCTTAGTTGATATATATTCTGTCCAGTTTTGCTTGCATTCTT 2755
|||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2682 TGTGTTTTCTTTCCACATTCTTAGTTTATATATATTCTGTCCAGTTTTGCTTGCATTCTT 2741
Query 2756 CCTTCAAGACCAAAAA--CAAATTATACCATTTGGTAGATTTGTGT-TTTCTACTTGTAA 2812
||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||
Sbjct 2742 TCTTCAAGACCAAAAAAACAAATTATACTATTTGGTAGATTTGTGTGTTTCTACTTGTAA 2801
Query 2813 ATCTCCt-tttttttCCCCACGTTTTC-AGTTTCAAAAGAAGAAGAATAAGAAATTTGAA 2870
||||| | ||||||||||||| || | |||| | ||||||||| || || || |||| |
Sbjct 2802 ATCTC-TATTTTTTTCCCCACATTA-CGAGTT-CTAAAGAAGAATAAAAACAA-TTTGCA 2857
Query 2871 TACAGAACAAAACTTTGAAGCTTCCATGGAGTT 2903
|||||||||||||||||||| |||||||| |||
Sbjct 2858 TACAGAACAAAACTTTGAAGGTTCCATGGTGTT 2890
> Ahg484500 jgi|Araly1|484500|fgenesh2_kg.5__492__AT3G27170.1
Length=2715
Score = 1954 bits (1058), Expect = 0.0
Identities = 1958/2385 (82%), Gaps = 92/2385 (4%)
Strand=Plus/Plus
Query 307 AGAGACAGCTATCGATGGATGAAGATGGAAACTTGCAGATTAGT---AATAGTAATTACA 363
|||||||| || | |||| |||||| |||| |||||| || |||||||||||||
Sbjct 104 AGAGACAGAGAT-GGTGGAAGAAGATTTAAAC---CAGATTGGTGGCAATAGTAATTACA 159
Query 364 ATGGAGAAGAAGAAGGAGAAGATCCAGAGAACAACACTTTGAATCAACCACTGCTTAA-G 422
||||||||| ||| || || || ||| |||| || || ||||| ||| |||| |
Sbjct 160 ATGGAGAAGCAGACCCAG-AG----AG-CAAC-ACAC-TT-AACCAACCTCTGGTTAAGG 210
Query 423 AGACATAGAACTCTTTCTTCAACTCCTCTTGCTTTGGTCGGTGCCAAGGTTTCACACATC 482
| || |||| |||||||||||||||||||| ||||| |||||||||||||| || |||
Sbjct 211 CTA-ATCGAACACTTTCTTCAACTCCTCTTGCCTTGGTTGGTGCCAAGGTTTCCCATATC 269
Query 483 GAGAGTTTAGATTATGAAATAAACGAGAATGATCTGTTCAAGCATGACTGGAGAAGCAGA 542
|| || || || |||||||||||||| || |||||||| |||||||| ||||||| |||
Sbjct 270 GAAAGCTTGGACTATGAAATAAACGAAAACGATCTGTTTAAGCATGATTGGAGAAAAAGA 329
Query 543 TCAAAAGCACAAGTGTTTCAATACATATTCTTAAAATGGACATTAGCTTGTCTTGTTGGT 602
||||| |||||||| |||||||| | ||| | |||||||| ||||||||||||||||||
Sbjct 330 TCAAAGGCACAAGTACTTCAATACGTGTTCCTGAAATGGACGTTAGCTTGTCTTGTTGGT 389
Query 603 CTCTTCACTGGTCTT-ATCGCTACTCTCATCAACCTT-GCTGTCGAAAACATCGCCGGTT 660
|| ||||||||| || ||||||||||||||||| ||| ||||| |||||||||||||| |
Sbjct 390 CTTTTCACTGGT-TTAATCGCTACTCTCATCAA-CTTAGCTGTTGAAAACATCGCCGGCT 447
Query 661 ACAAACTTCTCGCCGTCGGCT-ACTACATTGCTCAAGATAGGTTTTG-GACAGGTCTGAT 718
|||| ||| | ||||| || | ||| | | | ||||| | | | || |||||||||||
Sbjct 448 ACAAGCTTTTAGCCGTTGG-TCACTTCCTCACCCAAGA-AAGATATGTTACAGGTCTGAT 505
Query 719 GGT-CTTTACGGGGGCGAATTTGGGTCTGACTTTGGTGGCGACAGTAC-TTGTTGTTTAC 776
||| | || | |||||||||||||| ||||| ||||||||| | || | ||| ||||| |
Sbjct 506 GGTGC-TTGCTGGGGCGAATTTGGGACTGACGTTGGTGGCGTCTGTGCTTTG-TGTTTGC 563
Query 777 TTTGCTCCTACGGCGGCTGGTCCGGGGATCCCTGAGATTAAAGCTTACCTTAATGGCATT 836
||||||||||| |||||||| || || || |||||||| |||||||| ||||||||| ||
Sbjct 564 TTTGCTCCTACCGCGGCTGGACCTGGAATTCCTGAGATCAAAGCTTATCTTAATGGCGTT 623
Query 837 GACACTCCCAATATGTTTGGTTTTACCACCATGATGGTTAAGATTGTTGGAAGTATTGGA 896
|| |||||||| ||||||||| ||| || ||||| ||||||||||||||||| ||||||
Sbjct 624 GATACTCCCAACATGTTTGGTGCTACTACTATGATCGTTAAGATTGTTGGAAGCATTGGA 683
Query 897 GCGGTTGCAGCTGGACTTGATCTTGGTAAAGAAGGG-CCAT-TGGTTCATATTGGAAGTT 954
||||||||||||||||||||||| ||||||| |||| || | ||||||| |||||||| |
Sbjct 684 GCGGTTGCAGCTGGACTTGATCTGGGTAAAG-AGGGTCC-TCTGGTTCACATTGGAAGCT 741
Query 955 GCATAGCTTCTTTGCTTGGTCAAGGTGGTCCAGATAATCACAGAATCAAATGGAGATGGC 1014
||||||||||||||||||| ||||| || |||| || ||| | ||||| ||| ||||||
Sbjct 742 GCATAGCTTCTTTGCTTGGACAAGGCGGAACAGACAACCACCGTATCAAGTGGCGATGGC 801
Query 1015 TTCGTTACTTCAACAACGATAGAGATCGAAGAGATCTTATTACATGTGGATCTGCCT-CT 1073
||||||||||||||||||||||||| || || ||||| ||||||||||| || | || ||
Sbjct 802 TTCGTTACTTCAACAACGATAGAGACCGCAGGGATCTGATTACATGTGGTTCAG-CTGCT 860
Query 1074 GGAGTATGTGCTGCTTTCAGGTCACCAGTAGGAGGAGTACTTTTCGCTCTTGAGGAAGTC 1133
||||| ||||| || ||||||||||| || ||||| || |||||||| |||||||||||
Sbjct 861 GGAGTCTGTGCAGCCTTCAGGTCACCTGTTGGAGGTGTGCTTTTCGCCCTTGAGGAAGTG 920
Query 1134 GCTACGTGGTGGAGAAGCG-CTCTCTTGTGGAGAACATTCTTCAGTACAGCCGTTGTGGT 1192
|| || ||||||||||||| || | |||||| | || |||||||||||||| || || ||
Sbjct 921 GCCACTTGGTGGAGAAGCGCCT-TATTGTGGCGGACTTTCTTCAGTACAGCGGTCGTTGT 979
Query 1193 GGTTGTAT-TAAGAGCGTTCATTGAGATTTGTAACTCCGGGAAATGCGGACTT-TTCGGC 1250
||| || | |||||| |||||| ||||| || || || ||||| || || || || ||
Sbjct 980 GGTGGT-TCTAAGAGAGTTCATAGAGATCTGCAATTCAGGGAAGTGTGG-GTTGTTTGGA 1037
Query 1251 TCAGGAGGACTCATTATGTTCGATGTGAGTCATGTAGAGGT-TAGGTACCACGCAGCAGA 1309
|||||| || || ||||| ||||||||||| ||| | | || ||||| | | | ||
Sbjct 1038 AAAGGAGGTCTTATCATGTTTGATGTGAGTCACGTA-ACTTATACTTACCATGTAACTGA 1096
Query 1310 TATAATCCCAGTCACATTGATTGGAGTCTTTGGTGGCATTCTTGGAAGCTTGTACAATCA 1369
|||||||| |||| |||||||| || | ||||| |||||||| ||| | || |||||
Sbjct 1097 CATAATCCCTGTCATGTTGATTGGTGTAATCGGTGGAATTCTTGGGAGCCTCTATAATCA 1156
Query 1370 TCTT-CTGCATAAAGTTCTCCGGCTTTACAATCTCATCAACCAGAAGGGAAAGATTCATA 1428
||| |||||||||||||||||||||||||||||||||||| ||||||| ||||| || |
Sbjct 1157 -CTTCCTGCATAAAGTTCTCCGGCTTTACAATCTCATCAACGAGAAGGGTAAGATCCACA 1215
Query 1429 AGGTGCTTCTAAGTCTTGGGGTATCTCTATTCACATCAGTTTGCTTGTT-CGGTCTTCCT 1487
|||||||||| |||||| ||||| || |||||||| |||||| | || ||||||||||
Sbjct 1216 AGGTGCTTCTCAGTCTTACAGTATCACTCTTCACATCGGTTTGCCT-TTACGGTCTTCCT 1274
Query 1488 TTCTTAGCGGAATGCAAGCCTTGTGATCCTTCTATAGACGAGATATGTCCAACAAACGGA 1547
||| | ||| |||||||||||||||| || || ||||| ||||| || || || || |||
Sbjct 1275 TTCCTCGCGAAATGCAAGCCTTGTGACCCCTCGATAGATGAGATCTGCCCGACCAATGGA 1334
Query 1548 AGATCAGGAAATTTCAAGCAATTCAACTGTCCAAATGGTTATTACAACGATCTATCCACT 1607
||||| ||||| ||||| || |||||||| ||||| ||||| ||||| ||| || | |||
Sbjct 1335 AGATCGGGAAACTTCAAACAGTTCAACTGCCCAAAAGGTTACTACAATGATTTAGCTACT 1394
Query 1608 CTGCTTCTCACAACCAATGATGATGCAGTCAGAAACATTTTCTCTTCAAACACTCCTAAT 1667
||||||||||| ||||| ||||| || ||||||||| |||||||||| ||||| || |||
Sbjct 1395 CTGCTTCTCACCACCAACGATGACGCTGTCAGAAACCTTTTCTCTTCCAACACCCCCAAT 1454
Query 1668 GAGTTTGGCATGGTTTCTCTCTGGATATTCTTTG-GCCTCTACTGCATTTTGGGTCTTAT 1726
||||||||||||| ||| || ||||||||||||| || |||||||||| ||||| ||| |
Sbjct 1455 GAGTTTGGCATGGGTTCCCTGTGGATATTCTTTGTGC-TCTACTGCATCTTGGGGCTTTT 1513
Query 1727 AACATTCGGTATAGCGACACCGTCGGGTCTCTTCCTACCGATTATCCTCATGGGTTCTGC 1786
||||| || || || |||||||| ||||||||||| || || |||||||||||| ||||
Sbjct 1514 CACATTTGGAATTGCAACACCGTCTGGTCTCTTCCTTCCCATCATCCTCATGGGTGCTGC 1573
Query 1787 ATACGGTAGGATGCTAGGCACAGCAATGGGGTCTTACACAAACATAGATCAAGGGCTTTA 1846
||| || | ||||| ||| | || ||||| || ||||||| || || |||||||||||
Sbjct 1574 ATATGGCCGAATGCTTGGCGCTGCGATGGGATCCTACACAAGTATTGACCAAGGGCTTTA 1633
Query 1847 CGCGGTTCTTGGTGCAGCTTCACTCATGGCTGGTTCAATGAGAATGACTGTTTCACTCTG 1906
|| || |||||||||||| ||||||||||||| || |||||||||||||| ||||||||
Sbjct 1634 TGCTGTCCTTGGTGCAGCTGCACTCATGGCTGGATCGATGAGAATGACTGTGTCACTCTG 1693
Query 1907 TGTTATATTTCTGGAACTCACCAACAACCTTCTTTTG-TTGCCCATTACAATGTTTGTGC 1965
||||||||| || |||||||||||||||||||||||| || |||||||||||| ||||||
Sbjct 1694 TGTTATATTCCTCGAACTCACCAACAACCTTCTTTTGCTT-CCCATTACAATGATTGTGC 1752
Query 1966 TTCTGATAGCTAAAACAGTAGGTGACAGCTTCAATCTAAGTATCTACGAGATCATTCTC- 2024
||||||| || ||||| || || ||||||||||| | ||||||||| || ||||| ||
Sbjct 1753 TTCTGATTGCCAAAACTGTGGGAGACAGCTTCAACCCAAGTATCTATGACATCAT-CTTG 1811
Query 2025 CATCTTAAGGGCTTACCTTTCTTGGAAGCAAATCCAGAGCCGTGGATGAGGAATCTCACT 2084
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 1812 CATCTAAAGGGCTTACCTTTCTTAGAAGCAAATCCAGAGCCGTGGATGAGGAACCTCAGT 1871
Query 2085 GTAGGTGAGCTTAACGACGCTAAGCCTCCGGTTGTAACACTT-AACGGAGTAGAAAAAGT 2143
|| ||||||||| || |||||||| ||||||||||| || || || |||||||| ||
Sbjct 1872 GTTGGTGAGCTTGGTGATGCTAAGCCCCCGGTTGTAACCCTGCAA-GGCGTAGAAAAGGT 1930
Query 2144 GGCAAATATAGTCGATGTACTAAGGAACACAACGCATAACGCATTCCCAGTCTTGGATGG 2203
|||| ||||| ||||| |||| |||||| || ||||| |||||||| || || |||
Sbjct 1931 TTCAAAAATAGTTGATGTGCTAAAGAACACGACCCATAATGCATTCCCTGTTTTAGATAA 1990
Query 2204 AGCAGA--T-CA--AA--------AC-A-CTGG--C-ACAGAGCTCCATGG-TCTGATCC 2244
|||||| | | || || | |||| | ||||| ||||| || | ||||||
Sbjct 1991 AGCAGAAGTACCTCAAGTGGGTCTACCAACTGGTGCTACAGAACTCCACGGGT-TGATCC 2049
Query 2245 TAAGAGCTCACCTTGTGAAAGTTCTGAAAAAGAGATGGTTCTTGA-ATGAGAAAAGGAGA 2303
| ||||| ||||| || |||||||||||||||||||||||||||| | |||||||| |||
Sbjct 2050 TGAGAGCGCACCTCGTTAAAGTTCTGAAAAAGAGATGGTTCTTGACA-GAGAAAAGAAGA 2108
Query 2304 ACAGAAGAGTGGGAAGTTAGGGAAAAGTT-CACACCGGTTGAATTAGCTGAGAGAGAAGA 2362
|||||||||||||| || ||||| ||||| | || || |||||| ||||||||||||||
Sbjct 2109 ACAGAAGAGTGGGAGGTCAGGGAGAAGTTTC-CATGGGATGAATTGGCTGAGAGAGAAGA 2167
Query 2363 TAACTTCGATGATGTTGCAATCACAAGCTCAGAGATGCAATTGTATGTTGATCTTCATCC 2422
||||| || || || || ||||||||| | || ||| || ||||||| |||||||||||
Sbjct 2168 CAACTTTGACGACGTGGCCATCACAAGCGCTGAAATGGAAATGTATGTCGATCTTCATCC 2227
Query 2423 T-TTGACCAACACTACACCTTACACAGTGGTGCA-AAGTATGTCAGTGGCTAAAGCTTTG 2480
| || |||||||| |||||||||||||| || | || ||||| ||||| || |||||
Sbjct 2228 TCTT-ACCAACACAACACCTTACACAGTCATGGAGAAC-ATGTCTGTGGCCAAGGCTTTA 2285
Query 2481 GTTCTGTTCCGGTCA-GTGGGTCTCAGACATTTACTGGTGGTTCCCAAGATTCAAGCTTC 2539
|| || |||||| || ||||| ||| | ||||| || | ||||||||||||||||| ||
Sbjct 2286 GTACTATTCCGG-CAAGTGGGACTCCGGCATTTGCTTATTGTTCCCAAGATTCAAGCCTC 2344
Query 2540 AGGGA-TGTCACCTGTGATAGGGATCTTAACAAGGCAAGATCTCAGGGCTTATAACATTC 2598
|||| ||| |||||| ||||||||||||| ||||| ||||| ||||| || |||||||
Sbjct 2345 -GGGAATGTGTCCTGTGGTAGGGATCTTAACCAGGCAGGATCTAAGGGCATACAACATTC 2403
Query 2599 TACAAGCATTTCCTC-ACTTGGATAAA-CACAAAAGTGGAAAAGC 2641
||||||| ||||||| | ||||| ||| | |||||||||||||||
Sbjct 2404 TACAAGCCTTTCCTCTA-TTGGAAAAATC-CAAAAGTGGAAAAGC 2446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111261605645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5