BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G41350.1 Length=1391 Score E Sequences producing significant alignments: (Bits) Value Ahg493843 jgi|Araly1|493843|fgenesh2_kg.7__3276__AT5G41350.1 1864 0.0 > Ahg493843 jgi|Araly1|493843|fgenesh2_kg.7__3276__AT5G41350.1 Length=1347 Score = 1864 bits (1009), Expect = 0.0 Identities = 1251/1358 (92%), Gaps = 55/1358 (4%) Strand=Plus/Plus Query 2 TAATTTCTTAGGAAAGTCATTTTGATAGAGCGCACGATAAACACAGCACCGcaaaaagca 61 |||||||| ||||||||||||||||||||||||||||| || |||||||||| ||||||| Sbjct 1 TAATTTCTAAGGAAAGTCATTTTGATAGAGCGCACGAT-AA-ACAGCACCGC-AAAAGCA 57 Query 62 cagaagcagagaaagacgaagacaaaac---aa-aaaaagcttcccccaagaacaaaaag 117 ||||||||||||| |||||||||||||| || |||||||||| ||| | | ||||| Sbjct 58 CAGAAGCAGAGAAGGACGAAGACAAAACAAAAACAAAAAGCTTCTCCC--G-A-GAAAAG 113 Query 118 TTAGCATAGATGAAGAGTCTTCGGGTTTTGTAGTTTTTGT-AAAACAGaaaaaaaaaaaa 176 |||||||||||||||||||||||| |||||||||| |||| | || | || | ||||||| Sbjct 114 TTAGCATAGATGAAGAGTCTTCGGTTTTTGTAGTTGTTGTGATAA-A-AACAGAAAAAAA 171 Query 177 aGAGAAGAAGAGATGGGAGGTTGCTGTTGTTGTTCTTCTTCACGAAGAGCTGATGTAGAT 236 | | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 172 A-A-AAGAAGAGATGGGAGGTTGCTGTTGTTGTTCTTCTTCACAAAGAGCTGATGTAGAT 229 Query 237 AATGGACCTGCGTACTACTACTACCCAAGGGCAACAGAAGAGCGTGTGCCTTTATCTTCC 296 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 230 AACGGACCTGCGTACTACTACTACCCAAGGGCAACAGAAGAGCGTGTGCCTTTGTCTTCC 289 Query 297 GCTCATAACAGGACTTCCTCTGCAATCTCTACTGGTGTTGTAGTAGTAGACACAAACTTA 356 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 290 GCTCATAATAGGACTTCCTCTGCAATCTCTACTGGTGTTGTAGTAGTAGACACAAACTTA 349 Query 357 GAGACATCATCTCCTGATGCTTATATACCACCGCCACTGCCTACCCCTTTCGATGTGCCT 416 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || Sbjct 350 GAGACATCATCTCCTGATGCTTATATACCACCGCCACTGCCTATCCCTTTCGATGTGGCT 409 Query 417 ATAGGGATTCCTCAAACACCAGCTAGTGGTGAAGAGGCTACTTGTGTTGATATAAGAGAG 476 |||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 410 ATAGGGGTTCCTCAAACACCAGCCAGTGGTGAAGAGGCTACTTGTGTTGATATTAGAGAG 469 Query 477 GTTTCGGTGGACTCTGCTAATACCGAGTCTGCTCAAGAAACAGTTGATGGTATTACTCTC 536 ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 470 GTTTCAGTGGACTCTGCTAATACCGAGTCTTCTCAAGAAACAGTTGATGGTATTACTCTC 529 Query 537 GGGGTTCCAACTACATGCTCACATAAAGAGACAGATAGCAAAATCCAAACAGAGATTGAT 596 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 530 GGGGTTCCAACTACATGCTCACATAAAGAGACAGATTGCAAAATCCAAACAGAGATTGAT 589 Query 597 CTTGAATCTACTGAAGAAATAGACCCGAAGCTATCAAAAGCTGTTTTTATACCAATAGAG 656 |||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||| Sbjct 590 CTTGAATCTACTGAAGAAATAGACCCAAAGCTATCAAAAGCCGTCTTTATACCAATAGAG 649 Query 657 GAAGAGGAGGATTGTCCCATATGTTTGGAAGAATATGATATCGAGAACCCGAAACTTGTA 716 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 650 GAAGAGGAGGATTGTCCCATATGTTTGGAAGAATATGATATCGAGAACCCGAAACTTGTA 709 Query 717 GCCAAATGTGATCACCATTTTCACCTTGCATGCATTCTAGAATGGATGGAGAGAAGTGAA 776 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 710 GCCAAATGTGATCACCATTTTCACCTTGCATGCATTCTAGAGTGGATGGAGAGAAGTGAA 769 Query 777 ACCTGCCCCGTCTGCAACAAGGAAATGGTATTTGACTCTACTCTTGACTAGCAACCCGCA 836 ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| Sbjct 770 ACCTGCCCCGTCTGCAACAAGGAAATGGTATTTGACTCTCCTCTCGACTAGCAACCCGCA 829 Query 837 AATGCCGCATCTTAGAAGGCTCAATTCTCTCTGTATCagaagaaagaaattggagaacaa 896 | | | ||||||||||||||||||||||||||||||| ||| ||||||||| |||| || Sbjct 830 AGTACTGCATCTTAGAAGGCTCAATTCTCTCTGTATCCGAACAAAGAAATTAGAGAG-AA 888 Query 897 g-agaa-aaacttaaaa-agaaa-aaa-TGGGTAAGAATACACTAATAGCTGAT-CACAA 950 | |||| |||||||||| | ||| ||| ||| |||||||||||||||||||||| ||||| Sbjct 889 GGAGAAGAAACTTAAAAGAAAAAGAAAATGG-TAAGAATACACTAATAGCTGATTCACAA 947 Query 951 AGTTGGATTTACGAAACATGTCAGTGTTGATATACATATGTTTGTGTACAGACGTTTCAA 1010 || || ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 948 AGCTGAATTTACGAAACATGTGAGTGTTGATATACATATGTTTGTGTACAGACGTTTCAA 1007 Query 1011 ATCGTCTACaaaaaaaCGGAGATTAAGAATTAGAGTTTGTGCTTTAGATTCACTTCTGTG 1070 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 1008 GTCGTCTACAAAAAAT-GGAGTTTAAGAATTAGAGTTTGTGCTTTAGATTCACTTCTGTG 1066 Query 1071 AATAAAAAACGAGACAAAACTGATAATTTTTCTTCTAGATGTTTTAATTTTGGT------ 1124 ||||||||| | | ||| ||||||||||||||| ||||||| Sbjct 1067 AATAAAAAA-----------T--T--TTT--CTTCTAGATGTTTTA-TTTTGGTTTTGTT 1108 Query 1125 AATTCTTGTTTATAGGTTATTTTAGGAGTGTTTTAAAGCTGGGGTTTCAATTTGGGTTTG 1184 |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 1109 AATTCTTGTTTATAGGTTCTTTTAGGAGTGTTTTTAAGCTGGGGTTTCAATTTGGGTTTG 1168 Query 1185 ATTCAGTTTTTTCTTGAGTTTAAGAAAAATATTAATCAAACTGAAATTGAGAGTTTGTTA 1244 |||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| ||| Sbjct 1169 ATTCAGTTTTTTCTTGGGTTTAAGAAAAATGGTAATCAAACTGAAATTGAG--TTTATTA 1226 Query 1245 TGTATGGATTGGGTTTATTACGGTTCG-ATTTTAGTTTGGTTTAGTGCTTATTTATTTTC 1303 |||||| |||||||||||||||||||| |||| |||||||||||||| |||||||||||| Sbjct 1227 TGTATGCATTGGGTTTATTACGGTTCGGATTT-AGTTTGGTTTAGTGTTTATTTATTTTC 1285 Query 1304 TTTATGTTGTTCTGTGATATGTAATATGAAAATTGTTT 1341 ||| | ||||| |||||| |||||||||||||||||| Sbjct 1286 TTTTTATTGTTATGTGAT--GTAATATGAAAATTGTTT 1321 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51993184425 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5