BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G41480.1 Length=1746 Score E Sequences producing significant alignments: (Bits) Value Ahg330375 jgi|Araly1|330375|fgenesh1_pm.C_scaffold_7002602 2460 0.0 > Ahg330375 jgi|Araly1|330375|fgenesh1_pm.C_scaffold_7002602 Length=1593 Score = 2460 bits (1332), Expect = 0.0 Identities = 1511/1598 (95%), Gaps = 10/1598 (1%) Strand=Plus/Plus Query 41 ATGAGGACACTCTGGAATCACTTTAGTACCATTTCCTATAT-CAAAATTTCTCCGAGAAT 99 ||||||||||| |||| ||||| ||| |||||||| || | |||||||||||||||||| Sbjct 1 ATGAGGACACTGTGGAGCCACTTGAGTGCCATTTCCAAT-TGCAAAATTTCTCCGAGAAT 59 Query 100 GAGAAGAATTTCTGCAGCAAATTTGATCTCAAATCGAAATCTTTCAACCATTTCTTCTAC 159 |||||||| ||| |||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 60 AAGAAGAATATCTTCAGCAAATCTGACCTCAAATCGAAATCTTTCAACCATTTCTTCTAC 119 Query 160 TGAAGATCCCGAGCTCAGAGATTTTGTGGGATTTTTAGAATCTCTCAAAAACTATGAGAA 219 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 120 TGAAGATCCCGAGCTCAGAGATTTTGTGGGTTTTTTAGAATCTCTCAAAAACTATGAGAA 179 Query 220 ATCAGGTGTACCAAAAGGAGCTGGAACTGATTCTGATGATGGATTCGATCTGGGTCGAAT 279 ||||||||| ||||||||||||||||||||||| | ||||||||||||||| ||||||| Sbjct 180 ATCAGGTGTTCCAAAAGGAGCTGGAACTGATTCCGGTGATGGATTCGATCTCAGTCGAAT 239 Query 280 GAAACGTCTCATGCTTCGCCTCCGTAATCCTCATTACAAATACAAGGTTGTTCATGTTGC 339 ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| || Sbjct 240 GAAACGTCTCATGCTTCGCCTCCATAATCCTCATTCCAAATACAAGGTTGTTCATGTGGC 299 Query 340 TGGAACTAAGGGAAAAGGATCAACTTCTGCTTTTCTCTCTAATATCTTACGAGCTGGAGG 399 |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 300 TGGAACTAAGGGAAAAGGGTCAACTTCTGCTTTTGTCTCTAATATCTTACGAGCTGGAGG 359 Query 400 ATATTCTGTTGGTTGTTATTCTAGCCCACATATTCTGAGTATCAAAGAACGGATTTCTTG 459 |||||| |||||||||||||| |||||||||||| |||||||||||||||| || ||||| Sbjct 360 ATATTCAGTTGGTTGTTATTCGAGCCCACATATTTTGAGTATCAAAGAACGTATCTCTTG 419 Query 460 TAATGGAGAACCTGTCTCTGCTTCCACTCTTAATGATCTTTTCTATTCAGTCAAACCGAT 519 ||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| Sbjct 420 TAATGGAGAGCCTGTCTCTGCATCCACTCTTAATGATCTTTTCTATTCAATCAAACCGAT 479 Query 520 TCTTGAACAGTCTATTCAAGAGGAAAATGGTTCTTTGAGTCATTTTGAGATTCTCACTGG 579 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TCTCGAACAGTCTATTCAAGAGGAAAATGGTTCTTTGAGTCATTTTGAGATTCTCACTGG 539 Query 580 GATAGCCTTCTCTTTATTTGAAAAGGAAAATGTCGACATTGCGGTTATAGAGGCTGGGCT 639 |||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 540 GATAGCTTTTTCTTTATTTGAAAAAGAAAATGTCGACATTGCGGTTATAGAGGCTGGGCT 599 Query 640 AGGAGGAGCTCGAGACGCTACAAATGTCATTGAAAGTTCAAATCTTGCTGCATCGGTCAT 699 ||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 600 AGGAGGAGCTCGAGATGCTACAAATGTTATTGAAAGTTCCAATCTTGCTGCATCGGTCAT 659 Query 700 AACAACGATAGGTGAGGAACACATGGCAGCACTTGGGGGTTCCTTGGAAAGTATAGCAGA 759 ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 660 AACAACGATAGGTGAGGAACACATGGCTGCTCTTGGGGGTTCCTTGGAAAGTATAGCAGA 719 Query 760 GGCTAAATCTGGAATTATTAAACACGGTCGCCCAGTGGTTTTAGGTGGACCGTTTCTTCC 819 ||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 720 GGCCAAATCTAGAATTATTAAACACGGTCGCCCAGTGGTTTTAGGTGGGCCGTTTCTTCC 779 Query 820 TCATATCGAGGGCATTCTCCGTTCTAAAGCAGCTTCAG-TGTCGTCATCGGTTATTTTGG 878 |||||||||||| ||||| |||||||||||||| || | ||| ||||||||||||||||| Sbjct 780 TCATATCGAGGGTATTCTTCGTTCTAAAGCAGCATC-GATGTTGTCATCGGTTATTTTGG 838 Query 879 CATCTAATATTGGATCTAGTTCTTCAATCAAAGGCATCATTAACAAAAATGGGATCGGGC 938 |||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||| Sbjct 839 CATCTAATATTGGATCTAGTTCGTCAATCAAAGACATCATCAACAAAAATGGGATCGGGC 898 Query 939 TTTGCCAGTCCTGTGACATCGTGATACAGAATGAGAAAGATGATCAACCAATTGTTGAGC 998 |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct 899 TTTGCCAGTCCTGTGACATCGTGATACAAAATGAGAAAGATGATAAACCAATTGTTGAGC 958 Query 999 TTAGTGATGTAAACCTACGTATGCTTGGACATCACCAGCTCCAAAATGCTGTTACTGCCA 1058 ||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 959 TTAGTGATGTAAATCTACGCATGCTTGGGCATCACCAGCTCCAAAATGCTGTTACTGCCA 1018 Query 1059 CATGTGTGTCTCTTTGTCTTCGCGATCAAGGATGTGGGAGAGTGACAGATGAAGCAATTA 1118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 CATGTGTGTCTCTTTGTCTTCGCGATCAAGGATGTGGGAGAGTGACAGATGAAGCAATTA 1078 Query 1119 GGATTGGTTTAGAGAACACTCGTTTACTTGGGAGAAGTCAGTTTCTGACACCAAAAGAAG 1178 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 GGATTGGTTTAGAGAATACTCGTTTACTTGGGAGAAGTCAGTTTCTGACACCAAAAGAAG 1138 Query 1179 CAGAGACTTTACTATTACCCGGAGCAACAGTGCTTCTTGATGGAGCTCACACCAAAGAGT 1238 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1139 CAGAGACTTTACAATTACCCGGAGCAACAGTGCTTCTTGATGGAGCTCACACCAAAGAAT 1198 Query 1239 CAGCGCGAGCCCTCAAGGAGATGATAAAGAAGGATTTTCCAGAGAAAAG-ATTGGTATTT 1297 |||||||||| || ||||| ||||||||||| |||||| ||||||| || |||| | ||| Sbjct 1199 CAGCGCGAGCTCTAAAGGATATGATAAAGAAAGATTTTGCAGAGAAGAGGATTG-TGTTT 1257 Query 1298 GTGGTTGCCATGGCTAGTGACAAAGATCATGTGTCCTTTGCAAAAGAACTTCTCTCAGGT 1357 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1258 GTGGTTGCAATGGCTAGTGACAAAGATCATGTGTCCTTTGCAAAAGAACTTCTCTCAGGT 1317 Query 1358 CTAAAACCAGAAGCAGTGATTCTAACAGAAGCTGACATCGGTGGAGGTAAGATTAGATCA 1417 ||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct 1318 CTAAAGCCAGAAGCAGTGGTTCTAACAGAAGCTGACATTGGTGGAGGTAAGATTAGATCA 1377 Query 1418 ACGGAGTCTTCGGTGTTGAAAGAATCATGGATAAAAGCTGCTGATGAATTGGGGTCAAGG 1477 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1378 ACGTCGTCTTCGGTGTTGAAAGAATCATGGATAAAAGCTGCTGATGAATTGGGGTCAGGG 1437 Query 1478 TCTATGGAAGCTTCAGAAAACAAAACTGTGTTGGGTTCCTTAAAGCTTGCCTACAAGATA 1537 |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct 1438 TCTATGGAAGCTTCAGAAAACAAAACTGTGTTGGATTCCTTAAAGCTTGCCTATAAGATT 1497 Query 1538 CTCAGCGATGACACAA-CAAGTAGTGACTCAGGAATGGTTATAGTCA-CGGGTTCGCTTC 1595 ||||||||||||| || || |||||||||||||||||||||| | || ||||||| |||| Sbjct 1498 CTCAGCGATGACAGAAGCA-GTAGTGACTCAGGAATGGTTATCG-CAACGGGTTCACTTC 1555 Query 1596 ACATTGTATCTTCAGTCTTAGCTTCTCTTCAACATTAA 1633 |||||||||||||||||||||||||||||||||||||| Sbjct 1556 ACATTGTATCTTCAGTCTTAGCTTCTCTTCAACATTAA 1593 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65515221400 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5