BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41580.1
Length=2633
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947562 jgi|Araly1|947562|scaffold_703791.1 3640 0.0
Ahg470965 jgi|Araly1|470965|fgenesh2_kg.1__919__AT1G08910.1 289 9e-77
> Ahg947562 jgi|Araly1|947562|scaffold_703791.1
Length=2325
Score = 3640 bits (1971), Expect = 0.0
Identities = 2192/2299 (95%), Gaps = 14/2299 (1%)
Strand=Plus/Plus
Query 150 CGGTGGCTGGAACTGGCTTACGGGAGAAGACGGCAGCGTCACTGGTCAATTCCTTCCGAT 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 34 CGGTGGCTGGAACTGGCTTACGGGAGAAGACGGCAGCGTCACTGGTCAATTCCTTCCGAT 93
Query 210 TAGCGTCGGTGACTCAACGTTTACGTTACCACATTCAAGA-CGGAGCTAAGGTTGATCCT 268
|||||||||| ||||||||||||||||||||||||||| | ||||||||||| |||| ||
Sbjct 94 TAGCGTCGGTCACTCAACGTTTACGTTACCACATTCAA-ACCGGAGCTAAGGGTGATGCT 152
Query 269 AAGGAGTTTCAAATCTGTTGCATCTCTTTCGCTAAAGGCATTGATTTTGCTATAGCGAAT 328
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 AAGGAGTTTCAGATCTGTTGCATCTCTTTCGCTAAAGGCATTGATTTTGCTATAGCGAAT 212
Query 329 AATGATATTCCTAAGAAGGTTGAGGAGTTTCCGTGGTTACTCAAACAGTTGTG-CAGACA 387
|||||||||||||||||||||||||||||||| ||||| ||||||||| |||| | ||||
Sbjct 213 AATGATATTCCTAAGAAGGTTGAGGAGTTTCCCTGGTTGCTCAAACAGGTGTGTC-GACA 271
Query 388 TGGAACTGATGTGTACACTAAGACGGCGCTTATGGTGCTGATGATCTCTGTTAAGCATGC 447
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 272 TGGAACTGATGTGTACACTAAGACGGCGGTTATGGTGCTGATGATCTCTGTTAAGCATGC 331
Query 448 TTGTCATTTGGGATGGTTTTCGGATAGCGAGAGTCAAGAACTTATCGCTCTAGCTGATGA 507
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 332 TTGTCATTTGGGATGGTTTTCGGATAGAGAGAGTCAAGAACTTATCGCTCTGGCTGATGA 391
Query 508 GATAAGGACTTGTTTTGGGAGTTCTGGAAGCACTAGCCCTGGTATCAAAAGTCCTGGCAG 567
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 392 GATAAGGACTTGTTTTGGGAGTTCTGGAAGCACTAGCCCTGGTATCAATTGTCCTGGCAG 451
Query 568 TACATTTTCGCAGATCATGGAGAGGTTCTATCCATTTGTAAAGCTTGGGCATGTTCTTGT 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 TACATTTTCGCAGATCATGGAGAGGTTCTATCCATTTGTAAAGCTTGGGCATGTTCTTGT 511
Query 628 TTCTTTTGAAGTGAAGGCTGGCTATACAATGCTGGCGCATGATTTTTATATCTCAAAGAA 687
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 512 TTCTTTTGAAGTGAAGGCTGGCTATACAATGCTGGCGCATGATTTTCATATCTCAAAGAC 571
Query 688 TATGCCACATTCACTCCAAGAGAAAATTCGGTTATTTGTTGCCCAGACAGACAACATAGA 747
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 TATGCCACACTCGCTCCAAGAGAAAATTCGGTTATTTGTTGCCCAGACAGACAACATAGA 631
Query 748 CACGTCTGCCTGTATTTCAAATCCTCCAGAAGTCAGCTTCTTGCTAAATGGAAAGGGGGT 807
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 632 CACGTCTGCCTGTATTTCAAATCCTCCAGAAGTCAGCTTCCTGCTAAATGGAAAGGGGGT 691
Query 808 TGAGAAGAGAGTCAATATCGCAATGGATACAGGGCCTCAACTCCCTACAAATGTTACTGC 867
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 692 TGAGAAGAGAGTTAATATTGCAATGGATACAGGGCCTCAACTCCCTACAAATGTTACTGC 751
Query 868 ACAGCTGAAATATGGAACTAATCTTCTCCAAGTGATGGGGAATTTTAAAGGAAATTACAT 927
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 ACAGCTGAAATACGGAACTAATCTTCTCCAAGTGATGGGGAATTTTAAAGGAAATTACAT 811
Query 928 CATCATAATTGCTTTTACGGGACTGGTAGTGCCACCTGAAAAACCGGTTCTTAAAGATTA 987
|||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||
Sbjct 812 CATCATAATTGCTTTTACGGGACTGGTACTGCCGCCTGAAAAACCAGTTCTTAAAGATTA 871
Query 988 CCTTCAGTCCGGAGTCATTGAAGCAAGTCCAGATTCAGACATCATTGAGGGGCCATCACG 1047
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 872 CCTTCAGTCTGGAGTCATTGAATCAAGTCCAGATTCAGACATCATTGAGGGGCCATCACG 931
Query 1048 AGTATCTCTCAGTTGCCCTATAAGTCGCAAGCGGATCAAGCTACCAGTCAAGGGCCAGTT 1107
||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 932 AGTATCTCTCAATTGTCCTATAAGTCGCAAGCGGATCAAGCTTCCAGTCAAGGGCCAGTT 991
Query 1108 ATGTAAACATCTTCAGTGTTTTGATTTCTCAAACTACGTTCACATAAATATGAGGAACCC 1167
||||||||||||||||||||||||||||||||| || || |||||||||||||| |||||
Sbjct 992 ATGTAAACATCTTCAGTGTTTTGATTTCTCAAATTATGTCCACATAAATATGAGAAACCC 1051
Query 1168 AACCTGGCGCTGCCCGCATTGCAATCAACCTGTTTGCTACCCTGACATTCGTTTAGATCA 1227
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1052 ATCCTGGCGCTGCCCGCATTGCAATCAACCTGTTTGCTACCCCGACATTCGTTTAGATCA 1111
Query 1228 AAACATGGCCAAGATATTAAAAGATGTGGAACACAATGCTGCTGATGTAATCATCGATGC 1287
||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct 1112 AAACATGGCCAAGATATTAAAAGATGTGGAATATAATGCTGCTGCTGTAATCATCGATGC 1171
Query 1288 TGGTGGTACATGGAAGGTTACAAA-AAATACTGGCGAGACCCCGGAACCTGTGCGTGAGA 1346
|| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1172 TGATGGTACATGGAAGGTTACAAAGAAA-ACTGGCGAGACCCCGGAACCTGTGCGTGAGA 1230
Query 1347 TCATTCATGATCTAGAAGACCCGATGAGCTTATTAAACTCTGGTCCTGTTGTTTTCGATC 1406
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||||
Sbjct 1231 TCATTCATGATCTAGAAGACCCAATGAGCTTGTTAAACTCTGGTCCAGTTGTTTTGGATC 1290
Query 1407 TTACGGGGGATGATGATGCTGAACTGGAAGTTTTTGGTGACAACAAGGTTGAGGACCGGA 1466
||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 1291 TTACGGGGGATGATGATGCTGAAATGGAAGTTTTTGGTAACAACAAGATTGAGGACCGGA 1350
Query 1467 AGCCCTGTATGTCTGATGCTCAGGGTCAATCTAATAATAACAACACAAATAAACATCCTT 1526
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1351 AGCCCTGTATGTCTGATGCTCAGGGTCAATCTAATAATAACAACACAAATAAAGATGCTT 1410
Query 1527 CAAACGATGATTACTCTTCGATATTTGATATCTCTGATGTGATCGCACTTGACCCGGAGA 1586
||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||| | ||
Sbjct 1411 CAAACGATGATTACTGTTCGATATTCGATATCTCTGATGTGATCGCATTTGACCCAGTGA 1470
Query 1587 TTTTATCTGCTTTGGGAAACACTGCGCCACAACCGCATCAAGCTTCGAATACTGGAACTG 1646
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1471 TATTATCTGCTTTGGGAAACACTGCGCCACAACCGCATCAAGCTTTGAATACTGGAACTG 1530
Query 1647 GTCAACAATATTCAAACTTATCCCAAATACCAATGTCCATAGATCCAATGCCGGTACCTG 1706
|||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1531 GTCAACAATACTCCAACTTATCCCAAATACCAATGTCCATAGATCCAATGCAGGTACCTG 1590
Query 1707 TACCATTCTCGCAGACACCATCTCCAAGAGATAGACCAGCAACTACTTCCACTGTCTTCA 1766
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1591 TGCCATTCTCGCAGACACCATCTCCAAGAGATAGACCAGCAACTACTTCCACTGTCTTCA 1650
Query 1767 CCATACCGAATCCCTCTCCACAATACTCTCAGGTTCATGCTTCACCTGTTACACCCACCG 1826
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1651 CCATACCGAATCCCTCTCCACAATTCTCTCAGGTTCATGCTTCACCTGTTACGCCCACCG 1710
Query 1827 GAACATATCTTGGTAGAACCACTAGTCCGAGATGGAACCAGACTTAT-CAATCTCAAGCG 1885
| |||||||||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 1711 GGACATATCTTGGTAGAACCTCTAGTCCGAGATGGAACCAGACTTATTCA-TCTCAAGCG 1769
Query 1886 CCACCAATGACAACTCCATATACGAGCCGGAAGGTCTCAGTTCCAGTAACGAGCCAGTCG 1945
||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1770 CCATCAATGACAACTCCATATACGAGCCGGAGGGTCCCAGTTCCAGTAACGAGCCAGTCG 1829
Query 1946 CCAGCGAATGTATC-CTCTTTTGTTCAGTCTCAGCATGTCCCTAGAGTACTCAGCCAGCC 2004
||| ||||||||| | ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1830 GCAGTGAATGTATCGC-CTTATGTTCAGTCTCAGCATGTCCCTAGAGTACTCAGCCAGCC 1888
Query 2005 TAATAATTATGGCGTCAGAGGTTTAACCAGTAGCCATGCAAGCACTTCAA-GGCAGCACC 2063
||||| ||||||| |||||||| ||||||||||||||||||||||| ||| |||||||||
Sbjct 1889 TAATAGTTATGGCATCAGAGGTCTAACCAGTAGCCATGCAAGCACT-CAAAGGCAGCACC 1947
Query 2064 CAAGTGGTCCCACTGTTCAATCTGTTTCTCGATTAAGTGACCTAGTGGATGTAGACTTGA 2123
||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1948 CAACTGGTCCCACTGTTCAATCTGTTTCTCGAACCAGTGACCTAATGGATGTAGACTTGA 2007
Query 2124 CGGTTCCTGATACATCCAACTGGCGCCCGAGGATGCGAGGAAGTCTTGTGCCCGGTTCTC 2183
| |||||||||||||||||||||||||| ||||||||||| ||||||| | |||||||||
Sbjct 2008 CCGTTCCTGATACATCCAACTGGCGCCCAAGGATGCGAGGCAGTCTTGGGTCCGGTTCTC 2067
Query 2184 ATTCCACTGCTCTTGACCACATGATCATCCGACCTAGCCAACAGTCTCAAACTTCCACTA 2243
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
Sbjct 2068 ATTCCACTGCTCTTGACCACATGATAATCCGACCTACCCAACAGTCTCAAACTTCCACAA 2127
Query 2244 GGCTGAATAGTTCACAGCCGGTTCAGACACCATCGGTTCAAACGTCTCAAGCTCAGTCAC 2303
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2128 GGCTTAACAGTTCACAGCCGGTTCAGACACCATCGGTTCAAACGTCTCAAGCTCAGTCAC 2187
Query 2304 CTTTTACAACGGCTGCCTATAGAACCGAGACAGTTTTAGGAAACCGAAACCATCCGGTGC 2363
||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 2188 CTTTTTCAACGGCTGCCTATAGAACCGAGACAGTTTTAGGAAACCAAAACAATCCGGTGC 2247
Query 2364 CCGCTCCTCCTGGCAT-TGTTAGGCCTACTGGACCGACATCTTGATGGAGAACTTGAGAG 2422
|||| ||||||||| | ||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 2248 CCGCACCTCCTGGC-TCTGTAAGGCCTACTGGACCGACATCTTCATGGAGAACTTGAGAG 2306
Query 2423 GCTAGAACAAGGGGAAGTT 2441
|||||||||||| ||||||
Sbjct 2307 GCTAGAACAAGGAGAAGTT 2325
> Ahg470965 jgi|Araly1|470965|fgenesh2_kg.1__919__AT1G08910.1
Length=2804
Score = 289 bits (156), Expect = 9e-77
Identities = 489/644 (76%), Gaps = 46/644 (7%)
Strand=Plus/Plus
Query 575 TCGCAGATCATGGAGAGGTTCTATCCATTTGTAAAGCTTGGGCATGTTCTTGTTTCTTTT 634
|||||| |||| |||||||||||||||| ||| ||||| |||||| ||||||||||||||
Sbjct 361 TCGCAGGTCATAGAGAGGTTCTATCCATGTGTGAAGCTGGGGCATATTCTTGTTTCTTTT 420
Query 635 GAAG-TGAAGGCTGGCTAT-ACA-ATGCTGGCGCATGATTTTTATATCTCAAAGAATATG 691
|| | | || || | || | | ||| ||| | |||| || |||| |||||| |||
Sbjct 421 GAGGCT-AA-GCCAG-AATCAAAGATGTTGGTGAATGACTTCCATATTTCAAAGGCGATG 477
Query 692 CCACATTCACTCCAAGAGAAAATTCGG-TTATTTGTTGCCCAGACAGACAACAT-AGACA 749
|||||||| | | || || | | || |||||||| | || |||||| |||| || ||
Sbjct 478 CCACATTCTCACAAACAG-AGGGTAGGATTATTTGTGGTCCGGACAGAGGACATAAG-CA 535
Query 750 CG-TCTGCCTGTATT-TCAAATCCTCCAGAAGTCAGCTTCTTGCTAAATGGAAAGGGGGT 807
| ||| |||||| | | |||| | |||||||||||| ||| ||||||||||||| ||
Sbjct 536 -GATCTAATTGTATTGT-ACATCCACAAGAAGTCAGCTTTTTGTTAAATGGAAAGGGCGT 593
Query 808 TGAGAAGAGAGTCAATATCGCAATGGA-TACAGGGCCTCAACTCCCTACAAATGTTACTG 866
||| |||||||| || ||| ||||||| | | ||||| || || || || ||||||||||
Sbjct 594 TGACAAGAGAGTTAACATCTCAATGGAGT-CTGGGCCGCAGCTTCCAACTAATGTTACTG 652
Query 867 CACAGCTGAAATATGGAACTAATCTTCTCCAAGTGATGGGGAATTTTAAAGGAAATTACA 926
| | ||| || ||| | |||||||| |||| || || |||| ||| | ||||
Sbjct 653 CCCTGCTCAACCCTGGGGCAAATCTTCTACAAGCAATAGGCTGTTTTCGAGGTAGTTACT 712
Query 927 TCA-T-CATAATTGCTTTTACGGGACTGGT-AGTGCCA---CCTGAAAAACCGGTT-CTT 979
| | | | | |||||||| | ||| | || | | ||| || || ||||| ||| ||
Sbjct 713 TAATTGC-T-ATTGCTTTCA-TGGA-T-GTCA-TACCACTGCCCGACAAACC-GTTGCTG 765
Query 980 AAAGATTACCTTCAGTCC-GGAGTCATTGAAGC-AAGTCCAGATTCAGACATCATTGAGG 1037
|||||||| |||| ||| | |||||||||| | || | |||||| ||||| |||||||
Sbjct 766 AAAGATTATGTTCA-TCCTGAAGTCATTGAATCAAACT-CAGATTGTGACATAATTGAGG 823
Query 1038 GGCCATC-ACGAGTATCTCTCAGTTGCCCTATAAGTCGCAA-GCGGATCAAGCTACCAGT 1095
||||||| | || ||||||||||||| ||||| || || || ||| ||||| || || ||
Sbjct 824 GGCCATCAAGGA-TATCTCTCAGTTGTCCTATCAGCCG-AACGCGTATCAAACTTCCTGT 881
Query 1096 CAAGGGCCAGT-TATGTAAACATCTTCAGTGTTTTGATTTCTCAAACTACGTTCA-CATA 1153
||||| || | | |||||||||||||||||||||||||||| || || || || |||
Sbjct 882 GAAGGGTCA-TGTCTGTAAACATCTTCAGTGTTTTGATTTCTGGAATTATGT-CAACATG 939
Query 1154 AATATGAG--GAACCCAACCTGGCGCTGCCCGCATTGCAATCAA 1195
|||| || || || | | ||||||||||||||||||||||||
Sbjct 940 AATACAAGACGA-CC-ATCATGGCGCTGCCCGCATTGCAATCAA 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99301268715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5