BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G41620.1 Length=2064 Score E Sequences producing significant alignments: (Bits) Value Ahg493825 jgi|Araly1|493825|fgenesh2_kg.7__3258__AT5G41620.1 3011 0.0 Ahg474936 jgi|Araly1|474936|fgenesh2_kg.2__66__AT1G64180.1 440 2e-122 > Ahg493825 jgi|Araly1|493825|fgenesh2_kg.7__3258__AT5G41620.1 Length=2000 Score = 3011 bits (1630), Expect = 0.0 Identities = 1884/2002 (94%), Gaps = 36/2002 (2%) Strand=Plus/Plus Query 1 Atggaaagtaaagtaaga-g-g-agaagaagagagacaaaaagtggaaagattggtggaa 57 |||||||||||||||||| | | ||||||||||||||| ||||||||||||||||||||| Sbjct 1 ATGGAAAGTAAAGTAAGAGGAGAAGAAGAAGAGAGACAGAAAGTGGAAAGATTGGTGGAA 60 Query 58 aagttaaagGTTCataataataataataatCGATCTTCAACTCCGGCGCACATTAGCTTC 117 ||||| || | ||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 61 AAGTT-AA----C-GAATCATATTAATAATCGATCTTCAACTCCGGCGCACATTAGCTTC 114 Query 118 GTTCCTAACTCAATCGTTGTGTCCTCTAGAAAGCTCGCTGCTGCTTTCTGGGAGTTTCAT 177 || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 115 GTCCCTAACTCAATCGTTGTTTCCTCTAGAAAACTCGCTGCTGCTTTCTGGGAGTTTCAT 174 Query 178 CAGTACCACTACAAAGACGAAGAAGATTGCTCTTACTCTTACCTCTCCTCTGCTTCTGCT 237 || ||||||||| | |||||||||| ||||||||||||||||||||||||| Sbjct 175 CAATACCACTAC-----C-AAGAAGATTG------CTCTTACCTCTCCTCTGCTTCTGCT 222 Query 238 AAAATGCACCGCGGCCCAAATGGTTTCGCCGGAGCTAGTAGCCGCCGTCAACGTCACGG- 296 | ||||||||| || | |||||||||||||||||||||| |||||||||||||||||| Sbjct 223 AGAATGCACCGTGGGGCGAATGGTTTCGCCGGAGCTAGTAACCGCCGTCAACGTCACGGC 282 Query 297 AAAGGCGGTTGCGGTTAAGGAGAATGGTCTTGACCTTTCTCAATTCCTTCGAGATCCTTC 356 ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 283 AAA-GCGGTGGCGGTTAAGGAGAATGGTCTTGACCTTTCCCAATTCCTTCGAGATCCTTC 341 Query 357 TCCTGATCATCAGCCAGATAGTGCGGGAAGTCTAAGGAGACAGATTGGTCAAATGTTGAT 416 ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 342 TCCTGATTATCAGCCAGATAGTGCGGGAAGTCTAAGGAGGCAGATTGGTCAAATGTTGAT 401 Query 417 AAAGCATCATCAATCAATCGATAGAAACAATCACGCTCTTCAGCCTGTATCTCCTGCTAG 476 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 402 AAAGCATCATCAATCAATCGAAAGAAACAATCACGCGCTTCAGCCTGTATCTCCTGCTAG 461 Query 477 TTACGGAAGCTCTCTCGAGGTTACGACATACAACAAAGCAGTAACTCCAAGTAGTTCATT 536 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 462 TTACGGAAGCTCTCTCGAGGTTACGACATACAACAAAGCGGTAACTCCAAGTAGTTCATT 521 Query 537 GGAGTTCCGAGGAAGACCGTCTAGAGAACCTCACTACAATCTCAAGACATCAACCGAACT 596 ||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||| Sbjct 522 GGATTTCCGAGGAAGAGCGTCTAGAGAACCTCATTACAATCTCAAGACATCAACCGAACT 581 Query 597 TCTTAAAGTACTGAACCGTATTTGGAGCCTTGAGGAGCAGCATGTCTCCAATATCTCCTT 656 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 582 TCTTAAAGTATTGAACCGTATTTGGAGCCTTGAGGAGCAGCATGTCTCCAATATCTCTTT 641 Query 657 GATAAAAGCTTTGAAAACCGAGGTGGCTCATTCACGCGTTCGAATCAAGGAGCTTCTTAG 716 |||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 642 GATAAAGGCTTTGAAAACCGAGGTGGCTCATTCTCGTGTTCGAATCAAGGAGCTTCTTAG 701 Query 717 GTACCAGCAAGCCGATAGACACGAGCTAGACAGTGTGGTGAAGCAACTCGCTGAAGAAAA 776 |||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 702 GTACCAGCAAGCTGATAGACACGAGTTAGACGGTGTGGTGAAGCAACTCGCTGAAGAAAA 761 Query 777 GTTGTTGAGCAAGAATAAGGAAGTTGAGCGGATGAGCTCTGCTGTTCAGTCCGTGAGGAA 836 ||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 762 GTTGTTGAGGAAGAATAAGGAAGTTGAGCGGATGAGCTCTGCTGTTCATTCTGTGAGGAA 821 Query 837 AGCGTTAGAAGATGAGCGGAAACTTAGAAAACGTTCTGAGAGTTTGCATAGGAAAATGGC 896 || |||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| Sbjct 822 AGAGTTAGAAGATGAGCGGAAGCTTAGGAAACGTTCTGAGAGTTTGCATAGGAAATTGGC 881 Query 897 AAGAGAGCTCTCGGAAGTGAAGTCTTCGTTGTCTAACTGTGTCAAGGAGCTTGAGAGAGG 956 | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 882 ACGAGAGCTCTCGGAAGTGAAGTCTTCGTTGTCTAACTGTGTTAAGGAGCTTGAGAGAGG 941 Query 957 GTCTAAATCAAATAAGATGATGGAGCTACTCTGCGATGAGTTTGCCAAAGGGATCAAGAG 1016 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 942 GGCTAAATCAAATAAGATGATGGAGCTACTCTGCGATGAGTTTGCCAAAGGGATCAAGAG 1001 Query 1017 TTACGAAGAGGAGATTCACGGTTTAAAGAAGAAGAATCTTGATAAGGATTGGGCGGGTCG 1076 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1002 TTACGAAGAGGAGATTCACGGTTTAAAGAAGAAGAATCTTGATAAGGATTGGGCGGGTCG 1061 Query 1077 AGGTGGAGGAGATCAGTTGGTTCTTCATATTGCGGAATCTTGGCTTGACGAAAGGATGCA 1136 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1062 AGGTGGAGGAGATCAATTGGTTCTTCATATCGCGGAATCTTGGCTTGACGAAAGGATGCA 1121 Query 1137 GATGAGATTAGAAGGTGGAGATACATTGAATGGTAAGAACAGATCAGTGCTGGATAAGCT 1196 |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 1122 GATGAGATTAGAAGGTGGAGATACATTGAATGGTAACAACAGATCAGTGTTGGATAAGCT 1181 Query 1197 GGAGGTTGAGATCGAGACATTTCTTCAGGAGAAGCGGAATGAAATACCGAGAAACCGCCG 1256 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1182 CGAGGTTGAGATCGAGACATTTCTCCAGGAGAAGCGGAATGAAATACCGAGAAACCGCCG 1241 Query 1257 GAATTCACTTGAATCTGTTCCGTTTAACACCTTGAGTGCACCACCGCGGGATGTAGACTG 1316 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1242 GAATTCACTTGAATCTGTCCCGTTCAACACCTTGAGTGCACCACCGCGGGATGTAGACTG 1301 Query 1317 TGAAGAAGACTCTGGAGGAAGCGATTCTAATTGCTTTGAGCTCAAGAAACCTGCAGAGTC 1376 ||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 1302 TGATGAAGACTCTGGAGGAAGCGATTCGAATTGCTTTGAGCTCAAGAAAGCTGCAGAGTC 1361 Query 1377 TTATGGAGACGAAACTAAGAAACCAAACCAACATAACAAAGACGGTTCGATTGATGAAAA 1436 | |||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||| Sbjct 1362 TCATGGAGACGAAACTAAGAAACCAAACCAACTTAACAAAGACAGTTTGATTGATGAAAA 1421 Query 1437 GCCGAAAAGCCCGTCGAGTTTCCAAGTGAACTTTGAGGATCAAATGGCGTGGGCGTTATC 1496 | ||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| Sbjct 1422 GGCGAAAAGCCCGTCGAGTTTTCAAGTTAACTTTGAGGATCAAATGGCGTGGGCAATATC 1481 Query 1497 GAGTAACGGAAAGAAGAAAACCACCCGAGCTATTgaagacgaagaagaagaagaagaTGT 1556 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 1482 GAGTAACGGAAAGAAGAAAACCGCCCGAGCTATTGAAGACGAAGAAGAAGAAGA---TGT 1538 Query 1557 AAAGCCTGAGAACAGCAACAACAATAAGAAACCAGAAAATGAGTGTGCTACTACGAACAA 1616 |||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 1539 AAAGCCTGAGAATAGCAACAACATTAAGAAACCAGAAGATGAGTGTGCTACTACGAACAA 1598 Query 1617 GAACGATGTAATGGGGGAAATGATACGAACACACAGAAGGTTATTGTCCGAAACTCGTGA 1676 |||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 1599 GAACGATGCAATGGGGGAAATGATTCTAACACACAGAAGGTTATTGTCCGAAACTCGTGA 1658 Query 1677 AATCGATGAAGCGTCTTGCAATTTCCCATCTTCTCGAAGACAAGCAAGTCCAGTTCGACA 1736 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1659 AATCGATGAAGCGTCTTGCAATTTCCCATCTTCTAGAAGACAAGCAAGTCCAGTTCGACA 1718 Query 1737 ATGGATTTCAAGAACCGTCGCACCTGATCTTCTAGGCCCGTCGGAGATTGCGATAGCTCA 1796 ||||||||||||||| || ||||||| |||||||||| ||||||| ||||| |||||||| Sbjct 1719 ATGGATTTCAAGAACAGTGGCACCTGGTCTTCTAGGCTCGTCGGATATTGCAATAGCTCA 1778 Query 1797 TGGAGTAAAGGATAATACTTTGAAAACTAAGCTAGCAAACAGTTCAAAGTCGCGTCTTCG 1856 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 1779 TGGAGTAAAGGATAATACTTTGAAAACTAAGCTCGCAAAGAGTTCAAAGTCGCGTCTTCG 1838 Query 1857 GTTATTCAAAGGCTAATCTATCCAGAGTGGTTCGGTCGAAAACGGACAAAAACGAGAGTT 1916 |||||||||||||||||| ||||||||||||||||||||||||| | ||| || Sbjct 1839 GTTATTCAAAGGCTAATCCATCCAGAGTGGTTCGGTCGAAAACG-A-------GAG--TT 1888 Query 1917 CTTGTTGGATACACACAGATCCCTGAGTTTCATTCATATTCACGTTCTTTGTAAATCAAA 1976 |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 1889 CTTGTTGGATACACACAGATCCCTGAATTTCATTCATATTCATGTTCTTTGTAAATCAAA 1948 Query 1977 CACATCTATATATTTGTATAAT 1998 || ||||||||||||||||||| Sbjct 1949 CATATCTATATATTTGTATAAT 1970 > Ahg474936 jgi|Araly1|474936|fgenesh2_kg.2__66__AT1G64180.1 Length=1988 Score = 440 bits (238), Expect = 2e-122 Identities = 492/611 (81%), Gaps = 32/611 (5%) Strand=Plus/Plus Query 538 GAGT-TCCGAGGAAGAC--CG-TCTAGAGAACCTCACTACAATCTCAAGACATCAACCGA 593 |||| |||| ||||||| || || | || ||| ||||||||||||||||||||||||| Sbjct 624 GAGTCTCCG-GGAAGACGACGAGCTGGTGAGCCTAACTACAATCTCAAGACATCAACCGA 682 Query 594 ACTTCTTAAAGTACTGAACCGTATTTGGAGCCTTGAGGAGCAGCATGTC-TCCAATATCT 652 ||||||||||||||||||||| || |||||||| || ||||||||| || || ||||||| Sbjct 683 ACTTCTTAAAGTACTGAACCGAATCTGGAGCCTCGAAGAGCAGCAT-TCCTCTAATATCT 741 Query 653 CCTTGATAAAAGCTTTGAAAACCGAGGTGGCTCATTCACGCGTTCGAATCAAGGAGCTTC 712 |||| |||||| |||| ||||||||| | ||||||||||| | || ||||| ||||||| Sbjct 742 CCTTAATAAAATCTTTAAAAACCGAGCTTGCTCATTCACGTGCCCGGATCAAAGAGCTTC 801 Query 713 TTAGGTACCAGCAAGCCGATAGACACGAGCTAGAC-AGTGTGGTGAAGCAACTCGCTGAA 771 | || | |||||| |||||||||| ||| | || | | | |||||||||||||| | | Sbjct 802 TCAGATGCCAGCAGGCCGATAGACGCGATATGGATGATT-TAGTGAAGCAACTCGCGGGA 860 Query 772 GAAAAGTTGTTGAGCAAGA-AT-AAGGAAGTTGAGCGGATGAGCTCTGCTGTTCAGTCCG 829 |||||| ||| | |||| | |||||| ||| ||| | |||| ||| ||||| || | Sbjct 861 GAAAAGCTGTCAA--AAGATACGAAGGAACATGATCGGTTAAGCTATGCGGTTCAATC-G 917 Query 830 TGAGGAAAGCGTTAGAAGATGAGCGGAAACTTAGAAAACGTTCTGAGAGTTTGCATAGGA 889 | | |||||||||||||||||| || |||||||||||||||||| |||||| Sbjct 918 ---------C-T-AGAAGATGAGCGGAAACTGAGGAAACGTTCTGAGAGTTTGTATAGGA 966 Query 890 AAATGGCA-AGAGAGCTCTCGGAAGTGAAGTCTTCGTTGTCTAACTGTGTCAAGGAGCTT 948 || ||||| | ||||||||||||||||||||| | |||| |||||| || |||||| | Sbjct 967 AATTGGCACA-AGAGCTCTCGGAAGTGAAGTCAACTTTGTGTAACTGCGTTAAGGAGATG 1025 Query 949 GAGAGAGGGTCTAAATCAAATAAGATGATGGAGCTACTCTGCGATGAGTTTGCCAAAGGG 1008 ||||||||| |||| ||||| ||||| ||||| | | || ||||||||||| |||||| Sbjct 1026 GAGAGAGGGACTAAGTCAAAGAAGATTCTGGAGAGATTATGTGATGAGTTTGCAAAAGGG 1085 Query 1009 ATCAAGAGTTACGAAGAGG-AGATTCACGGTTTAAAGAAGAAGAATCTTGATAAGGATTG 1067 ||||||||||||||| ||| ||||||| ||||||||| ||||| | | |||||| | || Sbjct 1086 ATCAAGAGTTACGAA-AGGGAGATTCATGGTTTAAAGCAGAAG--T-TGGATAAGAACTG 1141 Query 1068 GGCGGGTCGAGGTGGAGGAGATCAGTTGGTTCTTCATATTGCGGAATCTTGGCTTGACGA 1127 | ||| | |||| | ||||||| |||||||| |||||||||||| |||||||| || Sbjct 1142 GAAAGGTTGGGGTGAACAAGATCAGATGGTTCTTTGTATTGCGGAATCATGGCTTGATGA 1201 Query 1128 AAGGATGCAGA 1138 |||||| |||| Sbjct 1202 AAGGATTCAGA 1212 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77627919310 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5