BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41700.4
Length=803
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493816 jgi|Araly1|493816|fgenesh2_kg.7__3249__AT5G41700.4 1075 0.0
Ahg906988 jgi|Araly1|906988|Al_scaffold_0002_69 551 3e-156
Ahg331685 jgi|Araly1|331685|fgenesh1_pm.C_scaffold_8001028 385 3e-106
Ahg495701 jgi|Araly1|495701|fgenesh2_kg.8__1517__AT5G56150.1 265 4e-70
> Ahg493816 jgi|Araly1|493816|fgenesh2_kg.7__3249__AT5G41700.4
Length=675
Score = 1075 bits (582), Expect = 0.0
Identities = 646/677 (95%), Gaps = 3/677 (0%)
Strand=Plus/Plus
Query 2 ATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAGGGGTTTCTCAGT 61
||||||||||||||||| || |||| |||||||||||||||||||||||| ||| |||||
Sbjct 1 ATCTGCAGGAGTGAATCACAGAACCGAATTTGGAGGATTCTTTCTGAGGGATTTTTCAGT 60
Query 62 GAGAAAATGGCTTCGAAACGGATCTTGAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCA 121
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGAAAATGGCGTCGAAACGGATCTTGAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCA 120
Query 122 ACCTCCTGCATTTTTGCAGGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATT 181
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACCTCCTGCATTTTTGTAGGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATA 180
Query 182 ATGGGTCCTGCAGAGAGTCCGTATTCAGGCGGTGTGTTTCTCGTTACCATTCACTTCCCT 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATGGGTCCTGCAGAGAGTCCGTATTCAGGCGGTGTGTTTCTCGTTACCATTCACTTCCCT 240
Query 242 CCGGACTATCCATTCAAACCACCAAAGGTTGCATTTAGGACGAAGGTGTTTCACCCTAAT 301
|| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCTGACTACCCATTCAAACCTCCAAAGGTTGCATTTAGGACGAAGGTGTTTCACCCTAAT 300
Query 302 ATCAACAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTC 361
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 301 ATCAACAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCCGCTCTC 360
Query 362 ACCATTTCCAAGGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGAC 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACCATTTCCAAGGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGAC 420
Query 422 CCTTTGGTACCAGAGATTGCACACATGTACAAAACCGACAGAGCCAAATACGAGGCTACT 481
|| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 421 CCGTTGGTGCCAGAGATTGCACACATGTACAAAACCGACAGAGCCAAGTACGAGGCCACT 480
Query 482 GCAAGAAACTGGACTCAGAAGTATGCCATGGGCTAAACAAAGATTCGTATGCTTCAGCAC 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCAAGAAACTGGACTCAGAAGTATGCCATGGGCTAAACAAAGATTCGTATGCTTCAGCAC 540
Query 542 CTGTTTATGTTTTCATGTCTGTTTCTTTCTTCTTCTTGTTTTAACTTTAATAAAAATGTC 601
||||||||| | |||| ||||||| |||||||||| |||||||||||||||||| |||||
Sbjct 541 CTGTTTATGCTCTCATATCTGTTTGTTTCTTCTTCCTGTTTTAACTTTAATAAATATGTC 600
Query 602 TAAAATATCAACTTTTT-CGTCTGTACTATATATGTTTATGGGTTTTATTATCATCATCT 660
||||||||| ||||||| | ||| ||| |||| |||||||||||||||||||| |||||
Sbjct 601 TAAAATATCTACTTTTTTCATCTATACGATAT--GTTTATGGGTTTTATTATCAGCATCT 658
Query 661 TTATCTGAAATTTGAAG 677
|||||||||||||||||
Sbjct 659 TTATCTGAAATTTGAAG 675
> Ahg906988 jgi|Araly1|906988|Al_scaffold_0002_69
Length=447
Score = 551 bits (298), Expect = 3e-156
Identities = 401/451 (89%), Gaps = 5/451 (1%)
Strand=Plus/Plus
Query 68 ATGGCTTCGAAACGGATCTTGAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCC 127
||||||||||||||||||||||| ||||| |||||||| ||||| || |||||||| |||
Sbjct 1 ATGGCTTCGAAACGGATCTTGAAAGAGCTCAAGGATCTTCAGAAGGATCCTCCAACTTCC 60
Query 128 TGCATTTTTGCAGGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGT 187
|||| ||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 TGCA---GTGCTGGCCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATAATGGGT 117
Query 188 CC-TGCAGAGAGTCCGTATTCAGGCGGTGTGTTTCTCGTTACCATTCACTTCCCTCCGGA 246
|| | | || ||||| ||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 118 CCATCC-GATAGTCCTTATTCAGGCGGAGTCTTTCTCGTAACCATTCACTTCCCTCCGGA 176
Query 247 CTATCCATTCAAACCACCAAAGGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAA 306
||||| ||||||||||||||||||||||||||||| || ||||||||||||||| ||||
Sbjct 177 TTATCCGTTCAAACCACCAAAGGTTGCATTTAGGACAAAAGTGTTTCACCCTAATGTCAA 236
Query 307 CAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCAT 366
|||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 237 CAGCAATGGAAGCATTTGCCTCGACATTTTGAAAGAACAATGGAGTCCTGCACTCACCAT 296
Query 367 TTCCAAGGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCTTT 426
|| ||||||||||| ||||||||||| |||||||||| ||||| |||||||| || ||
Sbjct 297 ATCTAAGGTGTTGCTTTCGATATGTTCATTGTTAACAGACCCAAACCCAGATGATCCATT 356
Query 427 GGTACCAGAGATTGCACACATGTACAAAACCGACAGAGCCAAATACGAGGCTACTGCAAG 486
||| ||||||||||| ||||||||||||||||| ||||| || || ||| ||||||| ||
Sbjct 357 GGTTCCAGAGATTGCTCACATGTACAAAACCGATAGAGCTAAGTATGAGTCTACTGCGAG 416
Query 487 AAACTGGACTCAGAAGTATGCCATGGGCTAA 517
|| |||||||||||||||||| ||||| |||
Sbjct 417 AAGCTGGACTCAGAAGTATGCAATGGGATAA 447
> Ahg331685 jgi|Araly1|331685|fgenesh1_pm.C_scaffold_8001028
Length=447
Score = 385 bits (208), Expect = 3e-106
Identities = 374/454 (82%), Gaps = 11/454 (2%)
Strand=Plus/Plus
Query 68 ATGGCTTCGAAACGGATCTTGAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCC 127
||||| ||||| |||||||||||||| |||||||||| ||||| || |||| || |
Sbjct 1 ATGGCGTCGAAGCGGATCTTGAAGGAATTGAAGGATCTTCAGAAGGA---TCCACCCACA 57
Query 128 TGCAT-TTTTGCAGGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGG 186
| ||| | |||||||| |||||||||||||||||||| ||||| || || || |||||
Sbjct 58 T-CATGTAGCGCAGGTCCTGTTGCTGAAGACATGTTTCACTGGCAGGCGACGATAATGGG 116
Query 187 TCCTGCAGAGAGTCCGTATTCAGGCGGTGTGTTT-CTCGTTACCATTCACTTCCCTCCGG 245
|||| |||||||||| ||| | || ||||| ||| || || ||||| || |||||||| |
Sbjct 117 TCCTTCAGAGAGTCCTTATGCTGGAGGTGT-TTTCCTTGTAACCATCCATTTCCCTCCAG 175
Query 246 ACTATCCATTCAAACCACCAAAGGTTGCATTTAGGACGAAGGTGTTTCA-CCCTAATATC 304
| || |||||||| || || ||||| || |||||||| |||||||| || ||| || ||
Sbjct 176 ATTACCCATTCAAGCCTCCTAAGGTGGCCTTTAGGACCAAGGTGTTCCATCCC-AACATT 234
Query 305 AACAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACC 364
||||||||||| ||||||||||| ||||| ||||| || || ||||| ||||| ||||||
Sbjct 235 AACAGCAACGGTAGCATTTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCGCTCACC 294
Query 365 ATTTCCAAGGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCT 424
|||||||||||| |||| ||||| ||||| ||||||| |||||||| || ||||| |||
Sbjct 295 ATTTCCAAGGTGCTGCTATCGATCTGTTCTTTGTTAACCGATCCAAACCCGGATGATCCT 354
Query 425 TTGGTACCAGAGATTGCACACATGTACAAAACCGAC-AGAGCCAAATACGAGGCTACTGC 483
||||| || ||||| || ||||||||||| || ||| ||| ||| |||||| | |||||
Sbjct 355 TTGGTGCCTGAGATAGCTCACATGTACAAGACTGACAAGA-ACAAGTACGAGTCCACTGC 413
Query 484 AAGAAACTGGACTCAGAAGTATGCCATGGGCTAA 517
| | | ||||||||||||||||||||||||||||
Sbjct 414 ACGGAGCTGGACTCAGAAGTATGCCATGGGCTAA 447
> Ahg495701 jgi|Araly1|495701|fgenesh2_kg.8__1517__AT5G56150.1
Length=725
Score = 265 bits (143), Expect = 4e-70
Identities = 290/361 (80%), Gaps = 10/361 (3%)
Strand=Plus/Plus
Query 158 ATGTTTCATTGGCAAGCTACAATTATGGGTCCTGCAGAGAGTCCGTATT-CAGGCGGTGT 216
||||| ||||||||||| || || |||||||| |||| || |||| || | || |||||
Sbjct 176 ATGTTCCATTGGCAAGCAACTATCATGGGTCCAACAGATAGCCCGT-TTGCCGGAGGTGT 234
Query 217 GTTTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAGGTTGCATT 276
||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| | ||
Sbjct 235 GTTTCTCGTTACCATTCACTTCCCTCCTGACTACCCATTCAAACCTCCAAAGGTTTCCTT 294
Query 277 TAGGACGAAGGTGTT-TCACCCTAATATCAACAGCAACGGAAGCATTTGCCTTGACATTT 335
| || ||||| || |||||| ||||||||||| || ||||| || || |||||||||
Sbjct 295 CCGCACCAAGGT-TTATCACCCAAATATCAACAGTAATGGAAGTATCTGTCTTGACATTC 353
Query 336 TGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGGTG-TTGCTCTCGATATGTTCG 394
| ||||| || ||||||||||| || ||| | |||||||| || || |||||||| ||
Sbjct 354 TCAAAGAGCAGTGGAGCCCTGCACTTACCGTATCCAAGGTTCTT-CTGTCGATATGCTCA 412
Query 395 CTGTTAACAGATCCAAATCCAGATGACCCTTTGGTACCAGAGATTGCACACATGTACAAA 454
|| | || |||||||| || ||||| |||||||| || || || || ||||| |||||
Sbjct 413 TTGCTGACGGATCCAAACCCTGATGATCCTTTGGTTCCTGAAATAGCTCACATCTACAAG 472
Query 455 ACCGACAGAGCCAAATACGAGGCTACTG-CAAGAAAC-TGGACTCAGAAGTATGCCATGG 512
|| ||| ||| ||| |||||| ||| || | || | ||||| ||||||||||| ||||
Sbjct 473 ACAGACCGAGTCAAGTACGAGTCTA-TGGCTC-AATCCTGGACCCAGAAGTATGCAATGG 530
Query 513 G 513
|
Sbjct 531 G 531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29659629426
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5