BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41790.1
Length=5137
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891481 jgi|Araly1|891481|Al_scaffold_0007_3467 1604 0.0
> Ahg891481 jgi|Araly1|891481|Al_scaffold_0007_3467
Length=2790
Score = 1604 bits (868), Expect = 0.0
Identities = 954/997 (96%), Gaps = 0/997 (0%)
Strand=Plus/Plus
Query 3765 AGCGTCTTCTGAAATAATGGCCTTAACAGAACTGATCAACAATCTGAAGAATGAGCTTGA 3824
|||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1794 AGCGTCTTCTGAAACAATGGCCTTAACAGAACAGATCAACAATCTGAAGCATGAGCTTGA 1853
Query 3825 TTCTCTACAGGTGCAGAAGAGCGAAACCGAAGCAGAGCTTGAGAGAGAGAAGCAAGAGAA 3884
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1854 TTCTCTACAGGTGCAGAAGAGCGAAACCGAAGCTGAGCTTGAGAGTGAGAAGCAAGAGAA 1913
Query 3885 ATCAGAATTGTCGAATCAGATCACCGATGTCCAGAAAGCATTGGTAGAGCAAGAAGCTGC 3944
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1914 ATCAGAATTGTTGAATCAGATCACCGATGTTCAGAAAGCATTGGTAGAGCAAGAAGCTGC 1973
Query 3945 TTACAATACGCTGGAAGAGGAACACAAGCAGATAAACGAACTATTTAAAGAAACTGAAGC 4004
||||||||||||| ||||||||||||| ||||| |||||||| || ||||||| |||| |
Sbjct 1974 TTACAATACGCTGAAAGAGGAACACAATCAGATCAACGAACTGTTCAAAGAAAGTGAAAC 2033
Query 4005 AACACTAAATAAGGTAACTGTGGATTACAAAGAAGCTCAAAGATTGTTGGAGGAGAGGGG 4064
||||||||||||| |||| | |||||||||||||||||||||||||||||| ||||| ||
Sbjct 2034 AACACTAAATAAGCTAACAGAGGATTACAAAGAAGCTCAAAGATTGTTGGAAGAGAGAGG 2093
Query 4065 TAAGGAAGTGACATCCAGAGATTCTACAATTGGGGTTCATGAAGAGACGATGGAGAGTTT 4124
||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 2094 TAAGGAAGTAACATCCAGAGATTCTGCAATCGGGGTTCATGAAGAGACGATGGAGAGTTT 2153
Query 4125 ACGTAACGAGCTGGAAATGAAAGGAGACGAGATCGAAACTCTCATGGAGAAGATCAGTAA 4184
|||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 2154 ACGTAATGAGCTGGAAATGAAAGGAGACGAGATTGAGACTCTCATGGAGAAGATCAGTAA 2213
Query 4185 CATCGAGGTTAAGCTACGCTTGTCGAACCAGAAACTGAGAGTAACCGAACAGGTACTAAC 4244
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2214 CATCGAGGTTAAGCTACGTTTGTCGAACCAGAAACTGAGAGTAACCGAACAGGTACTAAC 2273
Query 4245 AGAGAAAGAAGAAGCTTTCAGGAAAGAAGAGGCTAAGCACTTAGAGGAGCAAGCATTGCT 4304
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2274 GGAGAAAGAAGAAGCTTTCAGAAAAGAAGAGGCTAAGCACTTAGAGGAGCAAGCATTGCT 2333
Query 4305 TGAGAAGAATCTCACCATGACACATGAGACTTATCGAGGTATGATCAAAGAGATAGCAGA 4364
||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2334 TGAGAAGAATCTCGCGGTGACACATGAGACATATCGAGGTATGATCAAAGAGATAGCAGA 2393
Query 4365 TAAAGTGAACATAACAGTAGATGGGTTTCAATCCATGTCAGAAAAACTCACGGAGAAACA 4424
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 2394 TAAAGTGAACATAACAGTAGATGGGTTTCAATCCATGTCGGGAAAACTCACGGAGAAACA 2453
Query 4425 GGGGAGATACGAGAAAACTGTAATGGAGGCATCAAAAATACTGTGGACTGCGACGAATTG 4484
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2454 GGGGAGATACGAGAAAACTGTAATGGAGGCATCGAAAATACTGTGGACTGCGACGAATTG 2513
Query 4485 GGTGATagagagaaatcacgagaaggagaagatgaataaagagatagagaagaaagatga 4544
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2514 GGTGATAGAGAGAAATCACGAGAAGGAGAAGATGAAGAAAGAGATAGAGAAGAAAGATGA 2573
Query 4545 agaaataaaaaagcttggaggaaaagtaagagaagatgaaaaagagaaggagatgatgaa 4604
||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 2574 AGAAATAAAAAGGCTTGGAGGAAAAGTAAGAGAAGATGAAAAAGAGAAGGAAACGATGAA 2633
Query 4605 agagactttgatgggacttggagaagagaaaagagaagCGATAAGGCAATTATGTGTTTG 4664
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2634 AGAGACTTTAATGGGACTTGGAGAAGAGAAAAGAGAAGCGATAAGGCAGTTATGTGTTTG 2693
Query 4665 GATCGATCACCATAGAAGTCGTTGTGAATATCTTGAGGAGGTTTTGTCTAAGACCGTTGT 4724
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2694 GATCGATCACCATAGAAGTCGTTGTGAATATCTTGAGGATGTTTTGTCTAAGACCGTTGT 2753
Query 4725 GGCTCGAGGCCAAAGAAGAGTGTCGCAGCGAACTTAA 4761
||||||||||||||||||||||||||||||| |||||
Sbjct 2754 GGCTCGAGGCCAAAGAAGAGTGTCGCAGCGAGCTTAA 2790
Score = 1247 bits (675), Expect = 0.0
Identities = 1059/1240 (85%), Gaps = 44/1240 (4%)
Strand=Plus/Plus
Query 844 ATGAATAGTGCAGAGGAAGAGAACAAATCTCTATCCTTGAAAGTTTCGGAGATTTCAGAT 903
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGAATAGTGCAGAGGAAGAGAATAAATCTCTATCCTTGAAAGTTTCAGAGATTTCAGAT 60
Query 904 GTGATCCAACAGGGACAGACCACCATACAAGAACTAATTTCCGAATTGGGAGAGATGAAG 963
| ||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 61 GAGATCCAACAGGCACAGAACACCATACAAAAACTAATTTCCGAATTGGGAGAGATGAAA 120
Query 964 GAAAAGTACAAGGAAAAAGAGAGTGAGCATTCTAGTTTGGTGGAGTTACATAAGACCCAT 1023
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 GAAAAGTACAAGGAAAAAGAGAGTGAGCATTCTAGTTCGGTGGAGTTACATAAGACCCAT 180
Query 1024 GAGAGAGAATCATCAAGTCAGGTGAAAGAATTAGAAGCA-CACA-TAGAATCATCAGAGA 1081
|||||||| ||||| ||||| ||||||||| |||||| | || | | ||||||||| | |
Sbjct 181 GAGAGAGATTCATCGAGTCATGTGAAAGAACTAGAAG-AGCA-AGTGGAATCATCAAAAA 238
Query 1082 AGTTGGTTGCAGATTTCACCCAAAGCCTGAACAATGCAGAGGAAGAGAAAAAACTGCTAT 1141
| || |||||||| || | |||||||||||||||||||||||||||||||||||| ||||
Sbjct 239 AATTAGTTGCAGAGTTGAACCAAAGCCTGAACAATGCAGAGGAAGAGAAAAAACTACTAT 298
Query 1142 CTCAGAAAATAGCAGAACTCTCTAACGAGATTCAAGAGGCGCAGAACACCATGCAAGAAC 1201
|||||||||||||||||||||||||||||||| ||||||| || |||||||| |||||||
Sbjct 299 CTCAGAAAATAGCAGAACTCTCTAACGAGATTAAAGAGGCACAAAACACCATACAAGAAC 358
Query 1202 TCATGTCTGAGTCTGGGCAGTTGAAAGAGAGCCACAGTGTGAAAG-AGCGAGAACTTTTC 1260
|||| ||||||||||| ||||||||||||||||||||||| |||| || |||| ||||||
Sbjct 359 TCATATCTGAGTCTGGACAGTTGAAAGAGAGCCACAGTGT-AAAGGAGAGAGATCTTTTC 417
Query 1261 AGTTTGAGGGACATCCATGAGATTCATCAAAGAGACTCATCCAC-CAGAGCAAGTGAATT 1319
|| |||||||||||||| |||| |||||||||||| |||||| | | ||| ||||||||
Sbjct 418 AGCTTGAGGGACATCCACGAGACTCATCAAAGAGAATCATCCTCTC-GAGTGAGTGAATT 476
Query 1320 AGAAGCTCAACTGGAGTCCTCAAAACAGCAGG-TCTCAGATTTGAGTGCGAGTCTGAAAG 1378
||||||||||||||| |||||| |||||| || ||||||| ||||||| | ||||||| |
Sbjct 477 AGAAGCTCAACTGGAATCCTCAGAACAGC-GGATCTCAGAGTTGAGTGTGGGTCTGAAGG 535
Query 1379 CTGCAGAGGAAGAAAACAAAGCTATATCCTCGAAAAACGTGGAAACTATGAACAAACTCG 1438
|||||||||||||||||||||||| ||||||||||| ||||||||||| |||| || |
Sbjct 536 ATGCAGAGGAAGAAAACAAAGCTATCTCCTCGAAAAATTTGGAAACTATGGACAAGCTTG 595
Query 1439 AACAAACGCAGAACACGATACAGGAACTCATGGCTGAATTGGGAAAGTTGAAAGACAGCC 1498
||||| |||||||||||||||| ||||||| || |||||| ||| ||||||||||| | |
Sbjct 596 AACAAGCGCAGAACACGATACAAGAACTCAGGGATGAATTAGGAGAGTTGAAAGACCGTC 655
Query 1499 ACAGAGAGAAAGAGAGTGAGCTTTCTAGTTTGGTGGAAGTACACGAG--ACTCACCAGAG 1556
||| ||||||||||||||||||||||||||||||||| ||||||||| | | | |||||
Sbjct 656 ACAAAGAGAAAGAGAGTGAGCTTTCTAGTTTGGTGGAGGTACACGAGGTA-T-ATCAGAG 713
Query 1557 AGATTCATCAATTC-ATGTGAAAGAATTAGAAGAGCAA-G-TGGAATCATCAAAGAAATT 1613
||||||| ||| | | ||| ||||||||| | ||| | || ||||| || | ||
Sbjct 714 AGATTCAACAAGCCGA-GTGGAAGAATTAGTTG--CAATGGTGAAATCAGCAGATCAACA 770
Query 1614 GGTTGCGGAGT-TGAACCAAACCCTGAACAATGCAGAGGAAGAGAAAAAAGTGCTATCTC 1672
|||||| || | |||| || | ||| ||| ||||||||||||||||||| || ||||||
Sbjct 771 GGTTGCAGA-TATGAAGCAGAGTCTGGACACTGCAGAGGAAGAGAAAAAACTGTTATCTC 829
Query 1673 AGAAAATAGCAGAACTTTCTAACGAGATTAAAGAGGCACAAAACACCATACAAGAACTCG 1732
||| ||| |||| | ||||| |||||| ||||||||||||| |||||| |||||| |
Sbjct 830 AGAGAATCTTAGAAATCTCTAATGAGATTCAAGAGGCACAAAAAACCATAGAAGAACACA 889
Query 1733 TGTCTGAGTCTGGGCAGTTGAAAGAGAGCCACAGT-GT-AAAGGATAGAGATCTTTTCAG 1790
|||||||||||| |||||||||||||||||| || | |||| | || || ||| | |
Sbjct 890 TGTCTGAGTCTGAACAGTTGAAAGAGAGCCAC-GTTGAGAAAG-AGAGGGAACTTA-CTG 946
Query 1791 CTT-GAGGGACATCCACGAGACTCATCAAAGAGAATCATCCACTCGCGTGAGTGAATTAG 1849
|| ||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 947 GTTTGAGGGACATTCACGAGACTCATCAAAGAGTATCATCCACTCGTTTGAGTGAATTAG 1006
Query 1850 AAGCTCAACTGGAATCCTCAGAACAGCGGATC-TCAGATTTGACTGTG-GATCTGAAGGA 1907
|| |||||||| ||| |||||||| ||| || | |||||||| || | | |||||| ||
Sbjct 1007 AAACTCAACTGAAATTATCAGAACAACGGGTCGT-AGATTTGAGTGCGAG-TCTGAATGA 1064
Query 1908 TGCAGAGGAAGAAAACAAAG-CTATCTCCTCGAAAAATTT-GGAAATTATGGACAAGCTT 1965
|||||||||||||| || | | || ||||| | | |||| |||||||| ||| ||||
Sbjct 1065 AGCAGAGGAAGAAAAGAA-GTCCATGTCCTC-AGAGATTTTGGAAATTACGGATGAGCTC 1122
Query 1966 GAACAGGCTCAGAA-CACGATAAAAGAACTCATGGA-TGAATTGGGAGAGT-TGAAAGAC 2022
||||||| || || || | || ||||||| ||| | |||||||| ||||| | |||||
Sbjct 1123 AAACAGGC-CAAAAGCAAGGTACAAGAACTTATG-ACTGAATTGGCAGAGTCT-AAAGAT 1179
Query 2023 -CGACACAAAGAGAAAGAGAGTGAGCTTTCTAGTTTGGTG 2061
| ||||| | | |||||||||||||||||||||||||||
Sbjct 1180 AC-ACACATACAAAAAGAGAGTGAGCTTTCTAGTTTGGTG 1218
Score = 942 bits (510), Expect = 0.0
Identities = 553/574 (96%), Gaps = 1/574 (0%)
Strand=Plus/Plus
Query 2811 GAGAGAATTATCCACTCAGTTAAGAGGTTTAGAAGCGCAACTGGAATCATCTGAACACAG 2870
||| |||| |||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1219 GAG-GAATCATCCACTCAGCTAAGAGATTTAGAAGCGCAACTGGAATCATCTGAACACAG 1277
Query 2871 GGTTTTGGAATTGAGCGAAAGTCTGAAGGCTGCAGAAGAAGAAAGCAGAACTATGTCCAC 2930
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1278 GGTTTCGGAATTGAGCGAAAGTCTGAAGGCTGCAGAAGAAGAAAGCAAAACTATGTCCAC 1337
Query 2931 GAAAATCTCAGAAACTTCAGATGAGCTTGAACGGACACAGATCATGGTACAGGAACTCAC 2990
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1338 GAAAATCTCAGAAACTTCAGACGAGCTTGAACGGGCACAGATCATGGTACAGGAACTCAC 1397
Query 2991 AGCTGATTCGAGCAAACTGAAAGAGCAGCTCGCTGAGAAAGAAAGCAAACTATTCCTTCT 3050
||||||||||||||||||||||||||||||||||||||||||| || |||| || |||||
Sbjct 1398 AGCTGATTCGAGCAAACTGAAAGAGCAGCTCGCTGAGAAAGAAGGCGAACTTTTACTTCT 1457
Query 3051 GACAGAGAAGGACAGCAAATCACAGGTGCAAATAAAAGAACTAGAAGCAACAGTAGCGAC 3110
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 TACAGAGAAGGACAGCAAATCACAGGTGCAAATAAAAGAACTAGAAGCAACAGTAGCGAC 1517
Query 3111 ACTGGAGCTGGAACTAGAGTCAGTTCGTGCCCGTATAATAGATCTTGAGACAGAGATTGC 3170
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1518 ACTGGAGCTGGAACTAGAGTCACTTCGTGCCCGTATAACAGATCTTGAGACAGAGATTGC 1577
Query 3171 AAGCAAGACCACCGTAGTTGAGCAGTTGGAAGCGCAAAACAGAGAAATGGTTGCTAGAAT 3230
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1578 AAGCAAGACCACCGTAGTTGAGCAATTGGAAGCGCAAAACAGAGAAATGGTTGCTAGAAT 1637
Query 3231 CTCAGAACTTGAGAAGACAATGGAGGAGAGAGGAACTGAACTCTCAGCTTTAACTCAAAA 3290
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1638 CTCAGAACTTGAGAAGACAATGGACGAGAGAGGAACTGAACTCTCAGCTTTAACTCAAAA 1697
Query 3291 ACTTGAGGATAACGATAAGCAATCATCGTCTTCAATTGAGACTTTGACAGCTGAGATCGA 3350
||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1698 ACTTGAGGATAACGAGAAGCAATCATCGTCCTCAATTGAGAGTTTGACAGCTGAGATCGA 1757
Query 3351 TGGCCTACGAGCAGAATTAGATTCAATGTCTGTT 3384
|||||||||||||||| |||||||||||||||||
Sbjct 1758 TGGCCTACGAGCAGAACTAGATTCAATGTCTGTT 1791
Score = 854 bits (462), Expect = 0.0
Identities = 567/618 (92%), Gaps = 6/618 (1%)
Strand=Plus/Plus
Query 1447 CAGAACACGATACAGGAACTCATGGCTGAATTGGGAAAGTTGAAAG-ACAGCCAC-AGAG 1504
|||||||| ||||| |||| || | ||||||||| || |||||| | || || || |
Sbjct 76 CAGAACACCATACAAAAACTAATTTCCGAATTGGGAGAGATGAAAGAAAAG-TACAAG-G 133
Query 1505 AGAAAGAGAGTGAGCTTTCTAGTTTGGTGGAAG-TACACGAGACTCACCAGAGAGATTCA 1563
| ||||||||||||| |||||||| ||||| || |||| |||| || |||||||||||
Sbjct 134 AAAAAGAGAGTGAGCATTCTAGTTCGGTGG-AGTTACATAAGACCCATGAGAGAGATTCA 192
Query 1564 TCAATTCATGTGAAAGAATTAGAAGAGCAAGTGGAATCATCAAAGAAATTGGTTGCGGAG 1623
|| | ||||||||||||| ||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 193 TCGAGTCATGTGAAAGAACTAGAAGAGCAAGTGGAATCATCAAAAAAATTAGTTGCAGAG 252
Query 1624 TTGAACCAAACCCTGAACAATGCAGAGGAAGAGAAAAAAGTGCTATCTCAGAAAATAGCA 1683
|||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 253 TTGAACCAAAGCCTGAACAATGCAGAGGAAGAGAAAAAACTACTATCTCAGAAAATAGCA 312
Query 1684 GAACTTTCTAACGAGATTAAAGAGGCACAAAACACCATACAAGAACTCGTGTCTGAGTCT 1743
||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 313 GAACTCTCTAACGAGATTAAAGAGGCACAAAACACCATACAAGAACTCATATCTGAGTCT 372
Query 1744 GGGCAGTTGAAAGAGAGCCACAGTGTAAAGGATAGAGATCTTTTCAGCTTGAGGGACATC 1803
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 373 GGACAGTTGAAAGAGAGCCACAGTGTAAAGGAGAGAGATCTTTTCAGCTTGAGGGACATC 432
Query 1804 CACGAGACTCATCAAAGAGAATCATCCACTCGCGTGAGTGAATTAGAAGCTCAACTGGAA 1863
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 433 CACGAGACTCATCAAAGAGAATCATCCTCTCGAGTGAGTGAATTAGAAGCTCAACTGGAA 492
Query 1864 TCCTCAGAACAGCGGATCTCAGATTTGACTGTGGATCTGAAGGATGCAGAGGAAGAAAAC 1923
||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||
Sbjct 493 TCCTCAGAACAGCGGATCTCAGAGTTGAGTGTGGGTCTGAAGGATGCAGAGGAAGAAAAC 552
Query 1924 AAAGCTATCTCCTCGAAAAATTTGGAAATTATGGACAAGCTTGAACAGGCTCAGAACACG 1983
|||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||
Sbjct 553 AAAGCTATCTCCTCGAAAAATTTGGAAACTATGGACAAGCTTGAACAAGCGCAGAACACG 612
Query 1984 ATAAAAGAACTCATGGATGAATTGGGAGAGTTGAAAGACCGACACAAAGAGAAAGAGAGT 2043
||| ||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 613 ATACAAGAACTCAGGGATGAATTAGGAGAGTTGAAAGACCGTCACAAAGAGAAAGAGAGT 672
Query 2044 GAGCTTTCTAGTTTGGTG 2061
||||||||||||||||||
Sbjct 673 GAGCTTTCTAGTTTGGTG 690
Score = 737 bits (399), Expect = 0.0
Identities = 450/475 (95%), Gaps = 2/475 (0%)
Strand=Plus/Plus
Query 2057 TGGTGAAGTCAGCAGATCAACAGGTTGCAGATATGAAGCAGAGTCTGGACAATGCAGAAG 2116
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 749 TGGTGAAATCAGCAGATCAACAGGTTGCAGATATGAAGCAGAGTCTGGACACTGCAGAGG 808
Query 2117 AAGAGaaaaaaaTGTTATCTCAGAGAATCTTAGATATCTCTAATGAGATTCAAGAAGCAC 2176
||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 809 AAGAGAAAAAACTGTTATCTCAGAGAATCTTAGAAATCTCTAATGAGATTCAAGAGGCAC 868
Query 2177 AAAAAACCATACAAGAACACATGTCTGAGTCTGAACAGTTGAAAGAGAGCCACGGTGTGA 2236
||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 869 AAAAAACCATAGAAGAACACATGTCTGAGTCTGAACAGTTGAAAGAGAGCCACGTTGAGA 928
Query 2237 AAGAGAGGGAACTTACTGGTTTGAGGGACATTCACGAGACTCATCAAAGAGAATCATCCA 2296
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 929 AAGAGAGGGAACTTACTGGTTTGAGGGACATTCACGAGACTCATCAAAGAGTATCATCCA 988
Query 2297 CTCGTTTGAGTGAATTAGAAACTCAACTGAAATTATTAGAACAACGGGTCGTAGATCTGA 2356
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 989 CTCGTTTGAGTGAATTAGAAACTCAACTGAAATTATCAGAACAACGGGTCGTAGATTTGA 1048
Query 2357 GTGCGAGTCTGAATGCTGCAGAGGAAGAAAAGAAGTCCCTGTCCTCA-ATGATCTTGGAA 2415
||||||||||||||| ||||||||||||||||||||| |||||||| | ||| ||||||
Sbjct 1049 GTGCGAGTCTGAATGAAGCAGAGGAAGAAAAGAAGTCCATGTCCTCAGA-GATTTTGGAA 1107
Query 2416 ATTACGGATGAGCTCAAACAGGCCCAAAGCAAGGTACAGGAACTTGTGACTGAATTGGCA 2475
|||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||
Sbjct 1108 ATTACGGATGAGCTCAAACAGGCCAAAAGCAAGGTACAAGAACTTATGACTGAATTGGCA 1167
Query 2476 GAGTCTAAAGATACACTCACACAAAAAGAGAATGAGCTTTCTAGTTTTGTGGAGG 2530
|||||||||||||||| || ||||||||||| ||||||||||||||| |||||||
Sbjct 1168 GAGTCTAAAGATACACACATACAAAAAGAGAGTGAGCTTTCTAGTTTGGTGGAGG 1222
Score = 366 bits (198), Expect = 8e-100
Identities = 541/703 (77%), Gaps = 38/703 (5%)
Strand=Plus/Plus
Query 852 TGCAGAGGAAGAGAACAAATCTCTATCCTTG-AAAGTTTCGGAGA-TTTCAGATGTGATC 909
|||||||||||| |||||| || | |||| | ||| ||| ||| | | | || | |
Sbjct 537 TGCAGAGGAAGAAAACAAAGCTATCTCCTCGAAAAATTT-GGAAACTAT-GGACAAGCTT 594
Query 910 CAAC-AGGGACAGACCACCATACAAGAACTAATTTCCGAATTGGGAGAGATGAAGGAAAA 968
||| || | |||| ||| ||||||||||| | ||||| |||||| |||| | |
Sbjct 595 GAACAAGCG-CAGAACACGATACAAGAACTCAGGGATGAATTAGGAGAGTTGAAAG-ACC 652
Query 969 GT-ACAAGGAAAAAGAGAGTGAGCATTCTAGTTTGGTGGAGTTACATAAGACCCATGAGA 1027
|| |||| || ||||||||||||| |||||||||||||||| |||| || || |||
Sbjct 653 GTCACAAAGAGAAAGAGAGTGAGCTTTCTAGTTTGGTGGAGGTACACGAGGTATATCAGA 712
Query 1028 GAGAATCATCAAGTCAG-GTGAAAGAATTAGAAGCACA-CATAG-AATCATCAGA-GAAG 1083
|||| ||| |||| | | ||| ||||||||| ||| | | | ||||| |||| ||
Sbjct 713 GAGATTCAACAAG-CCGAGTGGAAGAATTAGTTGCA-ATGGT-GAAATCAGCAGATCAA- 768
Query 1084 TTGGTTGCAGATTTCACCCAAAGCCTGAACAATGCAGAGGAAGAGAAAAAACTGCTATCT 1143
|||||||||| | | || || ||| ||| |||||||||||||||||||||| |||||
Sbjct 769 CAGGTTGCAGATATGAAGCAGAGTCTGGACACTGCAGAGGAAGAGAAAAAACTGTTATCT 828
Query 1144 CAGAAAATAGCAGAACTCTCTAACGAGATTCAAGAGGCGCAGAACACCAT-GCAAGAACT 1202
|||| ||| |||| ||||||| |||||||||||||| || || ||||| | ||||||
Sbjct 829 CAGAGAATCTTAGAAATCTCTAATGAGATTCAAGAGGCACAAAAAACCATAG-AAGAACA 887
Query 1203 CATGTCTGAGTCTGGGCAGTTGAAAGAGAGCCACAG-TGTGAAAGAGCGAGAACTTTTC- 1260
|||||||||||||| |||||||||||||||||| | || ||||||| | |||| || |
Sbjct 888 CATGTCTGAGTCTGAACAGTTGAAAGAGAGCCAC-GTTGAGAAAGAGAGGGAAC-TTACT 945
Query 1261 AGTTTGAGGGACATCCATGAGATTCATCAAAGAG-ACTCATCCAC-CAGAGCAAGTGAAT 1318
||||||||||||| || |||| ||||||||||| | |||||||| | | |||||||
Sbjct 946 GGTTTGAGGGACATTCACGAGACTCATCAAAGAGTA-TCATCCACTC-GTTTGAGTGAAT 1003
Query 1319 TAGAAGCTCAACTGGAGTCCTCAAAACAGCAGGTC-TCAGATTTGAGTGCGAGTCTGAAA 1377
||||| |||||||| | | ||| |||| | |||| | |||||||||||||||||||||
Sbjct 1004 TAGAAACTCAACTGAAATTATCAGAACAACGGGTCGT-AGATTTGAGTGCGAGTCTGAAT 1062
Query 1378 GCTGCAGAGGAAGAAAACAAAG-CTATATCCTCGA-AAAACGTGGAAACTATGAACAAAC 1435
| |||||||||||||| ||| | || ||||| | | | |||||| || | | | |
Sbjct 1063 GAAGCAGAGGAAGAAAA-GAAGTCCATGTCCTC-AGAGATTTTGGAAATTACGGATGAGC 1120
Query 1436 TCGAACAAACGCAGAA-CACGATACAGGAACTCATGGCTGAATTGGGAAAGT-TGAAAGA 1493
|| |||| | || || || | |||| ||||| ||| ||||||||| | ||| | |||||
Sbjct 1121 TCAAACAGGC-CAAAAGCAAGGTACAAGAACTTATGACTGAATTGGCAGAGTCT-AAAGA 1178
Query 1494 CAGC-CACAGAGAGAAAGAGAGTGAGCTTTCTAGTTTGGTGGA 1535
| | |||| | | |||||||||||||||||||||||||||||
Sbjct 1179 TA-CACACATACAAAAAGAGAGTGAGCTTTCTAGTTTGGTGGA 1220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 194474198030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5