BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G41800.1 Length=1531 Score E Sequences producing significant alignments: (Bits) Value Ahg493805 jgi|Araly1|493805|fgenesh2_kg.7__3238__AT5G41800.1 2453 0.0 > Ahg493805 jgi|Araly1|493805|fgenesh2_kg.7__3238__AT5G41800.1 Length=1528 Score = 2453 bits (1328), Expect = 0.0 Identities = 1466/1532 (96%), Gaps = 12/1532 (1%) Strand=Plus/Plus Query 2 TCATCATCATTCCATATATAAATCATTCACTTGTAGAATCTTCTTCTCTTTCACACTAAA 61 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 1 TCATCATCATTCCATATATAAATCATTCACTTGCAGAATCTTCTTCTCTTTCACACT-AA 59 Query 62 ATTCATCGATGACGGATCCTCCCAGACCCGACCCGTTTCCTGTTACCCGACTCGATTCCG 121 | ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 60 A-TCATCAATGACGGATCCTCCTAGACCCGACCCGTTTCCTGTTACCCGACTCGATTCCG 118 Query 122 ACGCCGGTGCTCTCTTCGTCCTCCAATCAAAAGGCGAGTGGTGGCACGCCGGATTTCATC 181 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 ACGCCGGAGCTCTCTTCGTCCTCCAATCAAAAGGCGAGTGGTGGCACGCCGGATTTCATC 178 Query 182 TAACGACGGCGATTGTTGGTCCGACGATATTGACATTACCATATGCGTTTAGAGGATTAG 241 |||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||| Sbjct 179 TAACGACGGCGATTGTTGGTCCAACGATATTGACATTACCGTATGCGTTCAGAGGATTAG 238 Query 242 GATGGTGGTTAGGGTTTGTTTGTTTAACGACGATGGGACTCGTTACTTTCTACGCTTATT 301 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 239 GATGGTGGTTAGGGTTTGTTTGTTTAACGACGATGGGTCTCGTTACTTTCTACGCTTATT 298 Query 302 ACCTCATGTCTAAGGTTCTTGATCACTGTGAAAAATCCGGCCGCCGTCACATCCGTTTCC 361 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 299 ACCTCATGTCTAAAGTTCTTGATCACTGTGAAAAATCCGGCCGCCGTCACATCCGGTTCC 358 Query 362 GGGAACTCGCCGCCGATGTTCTTGGATCTGGATTGATGTTTTATGTAGTGATCTTTATTC 421 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 359 GGGAACTCGCCGCCGATGTTCTTGGATCTGGATGGATGTTTTATGTAGTGATCTTTATTC 418 Query 422 AAACAGCTATCAACACTGGAATTGGTATTGGCGCCATTCTACTTGCAGGTCAATGTCTTG 481 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 419 AAACAGCTATCAACACTGGAATTGGTATTGGCGCTATTCTACTTGCAGGTCAATGTCTTG 478 Query 482 ATATAATGTATTCGAGTCTTTTCCCGCAAGGAACGTTGAAGCTTTACGAGTTCATTGCTA 541 |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 479 ATATAATGTACTCGAGTCTTTACCCGCAAGGAACGTTGAAGCTTTACGAGTTCATTGCTA 538 Query 542 TGGTGACTGTTGTGATGATGGTTCTCTCACAGCTTCCAAGTTTTCACTCTCTTAGACACA 601 ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 539 TGGTGACTGCTGTGATGATGGTTCTCTCACAGCTCCCAAGTTTTCACTCTCTTAGACACA 598 Query 602 TTAACTGTGCGTCTCTGCTTCTCAGCTTAGGATATACTTTCCTCGTCGTTGGGGCTTGTA 661 | |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 599 TAAACTTTGCGTCTCTGATTCTCAGCTTAGGATATACTTTCCTCGTCGTTGGGGCTTGTA 658 Query 662 TCAACCTAGGTTTGTCGAAAAACGCTCCTAAACGTGAGTATTCTCTAGAGCATTCGGATT 721 | |||||||||||||| ||||||||||||||||| || |||||| | ||||||||||||| Sbjct 659 TTAACCTAGGTTTGTCTAAAAACGCTCCTAAACGCGACTATTCTTTGGAGCATTCGGATT 718 Query 722 CAGGGAAAGTTTTTAGTGCCTTCACATCAATTTCGATCATAGCTGCTATTTTCGGAAATG 781 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 719 CAGGGAAAGTTTTTAGTGCCTTCACATCGATTTCGATCATAGCTGCTATTTTCGGAAATG 778 Query 782 GAATCTTACCCGAAATACAGGCAACTCTTGCTCCACCAGCCACAGGGAAGATGTTGAAAG 841 ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 779 GAATCCTACCCGAAATACAGGCAACTCTTGCTCCACCAGCAACAGGGAAGATGTTGAAAG 838 Query 842 GACTATTGTTGTGTTATAGTGTGATCTTCTTCACGTTTTACTCTG-CTGCAATTTCGGGA 900 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 839 GACTATTGTTGTGTTATAGTGTGATCTTCTTCACGTTTTACTC-GACTGCAATTTCGGGA 897 Query 901 TATTGGGTTTTTGGTAACAATTCGAGCTCTAATATCCTCAAGAACTTAATGCCTGATGAA 960 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 898 TATTGGGTTTTTGGTAACAATTCGAGCTCTAATATTCTCAAGAACTTAATGCCTGATGAA 957 Query 961 GGACCGACTCTGGCTCCTATCGTGGTGATTGGCTTAGCTGTCATCTTTGTCCTTCTTCAG 1020 ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 958 GGACCGACTTTGGCTCCTATCGTGGTGATTGGCTTAGCGGTCATCTTTGTCCTTCTTCAG 1017 Query 1021 CTTTTCGCCATTGGCCTTGTGTATTCTCAAGTTGCGTATGAAATAATGGAGAAGAAATCA 1080 ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| Sbjct 1018 CTTTTCGCCATTGGCCTCGTGTATTCTCAAGTTGCATATGAGATAATGGAGAAGAAATCA 1077 Query 1081 GCGGATACAACAAAAGGGATATTCTCAAAACGCAACCTTGTGCCGCGTTTGATACTAAGA 1140 |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct 1078 GCGGATACAACAAAAGGGATATTCTCAAGACGCAACCTTGTGCCCCGTTTGATACTAAGA 1137 Query 1141 ACACTATATATGGCGTTTTGCGGGTTCATGGCAGCGATGCTACCGTTCTTTGGGGATATA 1200 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1138 ACACTATATATGGCGTTTTGCGGGTTCATGGCAGCGATGCTACCGTTCTTTGGTGATATA 1197 Query 1201 AACGCGGTGGTAGGAGCGTTTGGGTTTATCCCACTCGATTTCGTGCTGCCAATGCTTCTA 1260 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 AACGCTGTGGTAGGAGCGTTTGGGTTTATCCCACTCGATTTCGTGCTGCCAATGCTTCTT 1257 Query 1261 TACAACATGACCTATAAGCCAACCAGACGGAGCTTCACGTATTGGATAAACATGACGATA 1320 ||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||| Sbjct 1258 TACAACATGACCTATAAGCCAACGAAACGGAGCTTCACATATTGGATAAACATGACGATA 1317 Query 1321 ATGGTTGTGTTCACTTGTGCAGGACTCATGGGAGCTTTCTCCTCCATTAGGAAACTTGTT 1380 |||||||||||||||||| | ||| || |||||||||||||||||||||||||||||||| Sbjct 1318 ATGGTTGTGTTCACTTGTACGGGAGTCCTGGGAGCTTTCTCCTCCATTAGGAAACTTGTT 1377 Query 1381 CTTGATGCTAATAAGTTCAAGTTGTTTAGCAGTGAAGTTGTTGATTAGATGGTTTTGATA 1440 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1378 CTTGATGCTAATAAGTTCAAGTTGTTTAGCAGTGAAGTTGTTGATTAGATGGTTATGATA 1437 Query 1441 GTGTGATAAAAACATAAACAATACTTGTTTTGTGG-TT------ACACTTGTACATGAAT 1493 || || ||||| |||| |||| ||||||||||||| || |||||||||||||||| Sbjct 1438 GTATGGTAAAA-CATAGACAACACTTGTTTTGTGGGTTTTTTTTACACTTGTACATGAAT 1496 Query 1494 TTCTCGAGTTGATTCATTATCACACAAAATGC 1525 || | |||| |||||||||||||||||||||| Sbjct 1497 TTTTTGAGTCGATTCATTATCACACAAAATGC 1528 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57325818725 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5