BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41850.1
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493799 jgi|Araly1|493799|fgenesh2_kg.7__3232__AT5G41850.1 1236 0.0
> Ahg493799 jgi|Araly1|493799|fgenesh2_kg.7__3232__AT5G41850.1
Length=934
Score = 1236 bits (669), Expect = 0.0
Identities = 865/952 (91%), Gaps = 44/952 (5%)
Strand=Plus/Plus
Query 2 TTGACGAAATTCACCGGCACTGTGACCTCATCGGATTCGGAAAGGCTTGGG-TTTGTGGA 60
|||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||
Sbjct 1 TTGACGAAATTCACCGGCACTGTGACCTCATCGGATCCGGAAAGG-GTGGGATTTGTGGA 59
Query 61 ATCTGGATCGGGTTCGGCTGATGAAGTGGTGGTTAGGCTTTTGTCGATGATGTCATTTCC 120
|||||| || ||||||||||||||| ||||| | ||||| |||||||||||||||| |
Sbjct 60 ATCTGGGTCAGGTTCGGCTGATGAA---GTGGTAAAGCTTTCGTCGATGATGTCATTTTC 116
Query 121 CGGCGTT-GAAGAAGCGACGGAGAGAGCCAACGT--G-AACAAAAGAACGGTGACGGTAA 176
|||| || |||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 117 CGGC-TTGGAAGAAGCGACGGAGAGAGCCAACGTGAGAAACAAAAGAACGGTGACGGTAA 175
Query 177 CGGTAACGGTAACGGTAGCGGTGGGGGAGGCCATTGTT-----TTGGGAAGAAGGAAATC 231
|||||||||| | ||| |||||||||||| ||| |||||||||||||
Sbjct 176 CGGTAACGGT----G-AGC-------GAGGCCATTGTTGCGACTTGTGAAGAAGGAAATC 223
Query 232 TGAATTGTCAAAGGTTTCTCGATGGCTTCACGGAGGAAAAGAAGAAAGGTGAAT---G-A 287
|||||||| ||||||| ||| |||||||||||||||||||||||||||| |||| | |
Sbjct 224 TGAATTGTTAAAGGTTCCTCTATGGCTTCACGGAGGAAAAGAAGAAAGGAGAATGAAGCA 283
Query 288 --A-G-A---AT---C-AGAGATTCCATGTTCGCCGGTCGTTATATTCGCGCACGGTGCC 336
| | | || | ||||||| ||||||||||||||| ||||||| |||||||||
Sbjct 284 TCATGTACTGATAAACAAGAGATTGTATGTTCGCCGGTCGTCGTATTCGCTCACGGTGCC 343
Query 337 GGTGCTCCCTCTTCTTCCGACTGGATGATTAGATGGAAGGAAATGTTAAAGAAGACATTA 396
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 344 GGTGCTCCCTCTTCTTCCGACTGGATGATTAGATGGAAAGAAATGTTAAAGAAGACATTA 403
Query 397 GAAGCTGTTGAAGTGGTCACATTTGACTATCCTTATCTTGCTGACGGGaaaaaaaGAGTA 456
|||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||
Sbjct 404 GAAGCTGTTGAAGTGGTCACATTTGACTATCCTTATATTGCTGATGGGAAAAGAAGAGTT 463
Query 457 GCTCCGAAAGCGGAGAAATTGATAGAGTTTCATTTGAATGTTGTTAAAGAAACTGCTGCT 516
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 464 GCTCCGAAAGCGGAGAAATTGATTGAGTTTCATTTGGATGTTGTTAAAGAAACTGCTGCT 523
Query 517 AAATTCCCTGGTCATCCTTTGATATTAGTTGGCAAATCAATGGGTTCTAGAGTAAGCTGT 576
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 524 AAATTCCCTGGTCATCCTTTGATATTAGCTGGCAAATCTATGGGTTCTAGAGTAAGCTGT 583
Query 577 ATGGTTTCAGCTGTGAATGAAGATGTTACAGTTTCAGCTGTGATATGTTTAGGATATCCA 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 ATGGTTTCAGCTGTGAATGAAGATGTTACAGTTTCAGCTGTGATATGTTTAGGATATCCA 643
Query 637 CTTAAGGGCGCGAAAGGTGCGATAAGAGACGAGAC-TCTACTGGAAATGGGAGTCCCTGT 695
||||||||||||||||||| ||| ||||||||||| | | ||||||||||||||||| ||
Sbjct 644 CTTAAGGGCGCGAAAGGTGTGATTAGAGACGAGACGT-TGCTGGAAATGGGAGTCCCAGT 702
Query 696 GATGTTTGTGCAGGGAAGCAAAGATCCGATGTGTCCTCTGAATAAGCTTGAAGCTGTTTG 755
||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 703 GATGTTTGTGCAGGGTAGCAAAGATCCGATGTGTCCTCTGGATAAGCTAGAAGCTGTTTG 762
Query 756 TAATAAAATGAAAGCTGTGACTGAGGTTCATGTGATTGATGGTGGAGATCACTCCTTCAA 815
||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 763 TAACAAAATGAAAGGTGTGACTGAGGTTCATGTGATTGATGGTGGAGATCACTCCCTCAA 822
Query 816 GATTGGGAAGAAACACCTTGAAACAAAGGAGTTAACACAAGAGGAAGTCGAAGATGTCGC 875
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 823 GATTGGGAAGAAACGCCTTGAAACAAAGGAGTTAACACAAGATGAAGTCGAAGATGTCGC 882
Query 876 TATGAAAGCAATAGCCGCTTTTGTCTCCAAATCTCTTGCTCAAAGCTCATAA 927
| | ||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 883 TCTCAAAGCAATATCAGCTTTTGTCTCCAAATCTCTTGCTCAAAGCTCATAA 934
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34386871134
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5