BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G42020.1 Length=2387 Score E Sequences producing significant alignments: (Bits) Value Ahg493781 jgi|Araly1|493781|fgenesh2_kg.7__3214__AT5G42020.1 3653 0.0 Ahg924468 jgi|Araly1|924468|scaffold_200029.1 2580 0.0 > Ahg493781 jgi|Araly1|493781|fgenesh2_kg.7__3214__AT5G42020.1 Length=2359 Score = 3653 bits (1978), Expect = 0.0 Identities = 2269/2400 (95%), Gaps = 58/2400 (2%) Strand=Plus/Plus Query 1 AGTTAAATTTCTTCGTCTTCCATAAAAAGCGACTACTTCACCATCACCTTCGGGCACTGG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGTTAAATTTCTTCGTCTTCCATAAAAAGCGACTACTTCACCATCACCTTCGGGCACTGG 60 Query 61 ACCTATTTAAGCATC-CTAACTTCTTCTTCAAAGCTTAAAAACCAGAA-AACAAAAGGAA 118 ||||||||||||||| | ||||||||| | | | |||||||| || |||| ||| Sbjct 61 ACCTATTTAAGCATCAC-AACTTCTTC-T---A-C-----AACCAGAAGAA-AAAAAGAA 108 Query 119 GCTCTCTGTTCAAATCAA--------AAAGAGAGATCGTACGCAAAAGTTTCCGATATGG 170 |||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 109 GCTCTCTGTTCAAAACAAGTTTCTTCGAAGAGAGATCGTACGCAAAAGTTTCCGATATGG 168 Query 171 CTCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTT-GCGATCATCTTCTTCGGATGTTTA 229 |||||||||| ||||||||| ||||||||||| || |||||||||||||||||||||||| Sbjct 169 CTCGCTCGTTCGGAGCAAACGGCACTGTTGTG-TTGGCGATCATCTTCTTCGGATGTTTA 227 Query 230 TTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGATCAGTTATTGGGATAGAT 289 ||||||||||| |||||||||||||||||||||||||| ||| ||||||| ||||||||| Sbjct 228 TTTGCGTTTTCTACTGCAAAAGAAGAGGCTACGAAGTTGGGAACAGTTATAGGGATAGAT 287 Query 290 CTTGGTACCACTTACTCTTGTGTTGGTGTTTACAAGAATGGTCATGTTGAAATTATTGCC 349 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 288 CTTGGTACCACTTACTCTTGTGTTGGTGTTTACAAGAATGGCCATGTTGAAATTATAGCC 347 Query 350 AATGACCAAGGAAACCGTATTACACCTTCATGGGTTGGTTTTACTGACTCTGAAAGGCTC 409 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||| Sbjct 348 AATGACCAAGGAAACCGTATTACACCTTCATGGGTTGGTTTTACTGATTCTGAGAGACTC 407 Query 410 ATTGGTGAGGCTGCTAAGAATCAGGCGGCTGTTAATCCTGAGAGGACTGTCTTCGACGTT 469 |||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| Sbjct 408 ATTGGTGAGGCTGCTAAGAATCAGGCTGCTGTTAATCCAGAGAGGACTATCTTCGACGTC 467 Query 470 AAGAGATTGATCGGGCGAAAATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTA 529 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 468 AAGAGATTGATCGGCCGAAAATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTA 527 Query 530 CCTTACCAGATTGTGAACAAGGATGGTAAGCCATACATTCAAGTCAAGATCAAGGATGGT 589 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 528 CCTTACCAAATTGTGAACAAGGATGGTAAGCCATACATTCAAGTCAAGATCAAGGATGGT 587 Query 590 GAGACTAAGGTTTTCAGTCCTGAGGAGATCAGTGCCATGATTCTGACTAAGATGAAGGAG 649 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 588 GAGACTAAGGTATTCAGTCCTGAGGAGATCAGTGCCATGATTCTGACTAAGATGAAGGAG 647 Query 650 ACAGCCGAAGCCTACCTTGGAAAGAAAATCAAGGACGCTGTTGTCACTGTTCCAGCTTAC 709 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 648 ACAGCCGAAGCTTACCTTGGAAAGAAAATCAAGGACGCTGTTGTCACTGTTCCAGCTTAC 707 Query 710 TTCAATGATGCTCAAAGGCAAGCTACCAAGGATGCCGGTGTTATTGCTGGGCTCAATGTT 769 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 708 TTCAACGATGCACAAAGGCAAGCTACCAAGGATGCCGGTGTTATTGCTGGGCTCAATGTT 767 Query 770 GCTAGAATCATCAACGAACCTACTGCTGCTGCTATTGCCTACGGTCTTGATAAGAAGGGT 829 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 768 GCGAGAATCATCAACGAACCTACTGCTGCTGCTATTGCCTACGGTCTTGACAAGAAGGGT 827 Query 830 GGTGAGAAGAACATCCTTGTATTTGACCTTGGTGGTGGTACTTTTGATGTCAGTGTCTTG 889 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 828 GGTGAGAAGAACATCCTTGTCTTTGATCTTGGTGGTGGTACTTTTGATGTCAGTGTCTTG 887 Query 890 ACCATTGATAACGGAGTGTTTGAGGTTCTCTCCACAAATGGTGACACTCACTTGGGAGGT 949 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 888 ACCATTGATAACGGAGTGTTCGAGGTTCTCTCCACAAATGGTGACACTCACTTGGGAGGT 947 Query 950 GAGGACTTTGACCACAGGATCATGGAGTACTTCATCAAGTTAATTAAGAAGAAGCACCAG 1009 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 948 GAGGACTTTGACCACAGGATCATGGAGTACTTCATCAAGTTGATTAAGAAGAAGCACCAG 1007 Query 1010 AAGGACATCAGCAAGGACAACAAGGCTCTTGGTAAGCTCCGAAGGGAATGTGAGAGGGCA 1069 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1008 AAGGACATCAGCAAGGACAACAAGGCTCTTGGTAAGCTCCGAAGGGAATGTGAGAGGGCA 1067 Query 1070 AAGAGAGCTCTAAGCAGTCAGCACCAAGTCCGTGTAGAGATTGAGTCACTCTTTGATGGT 1129 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1068 AAGAGAGCTCTAAGTAGTCAGCACCAAGTCCGTGTAGAGATTGAGTCTCTCTTTGATGGT 1127 Query 1130 GTTGATTTATCTGAGCCACTCACCAGAGCTCGTTTCGAGGAGCTTAACAATGATTTGTTC 1189 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1128 GTTGATTTATCTGAGCCACTCACCAGAGCTCGTTTCGAGGAGCTGAACAATGATTTGTTC 1187 Query 1190 AGGAAGACCATGGGACCTGTGAAGAAGGCCATGGATGATGCCGGTCTACAGAAGAGCCAG 1249 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1188 AGGAAGACCATGGGACCTGTGAAGAAGGCCATGGATGATGCTGGTCTACAGAAGAGCCAG 1247 Query 1250 ATCGATGAGATTGTCCTTGTTGGTGGAAGCACCAGGATCCCAAAGGTTCAGCAACTGTTG 1309 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1248 ATTGATGAGATTGTCCTTGTTGGTGGAAGCACCAGGATCCCAAAGGTTCAGCAACTGTTG 1307 Query 1310 AAGGACTTCTTTGAAGGTAAAGAGCCAAACAAGGGTGTGAACCCCGACGAGGCTGTTGCC 1369 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1308 AAGGACTTCTTTGAAGGTAAAGAGCCAAACAAGGGTGTGAACCCCGACGAGGCTGTTGCT 1367 Query 1370 TATGGTGCTGCTGTTCAGGGTGGTATTTTGAGCGGAGAAGGCGGTGATGAGACCAAAGAT 1429 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1368 TATGGTGCTGCTGTTCAAGGTGGTATTTTGAGCGGAGAAGGCGGTGATGAGACCAAAGAT 1427 Query 1430 ATCCTTCTTCTTGATGTTGCGCCACTCACTTTAGGTATCGAGACTGTAGGAGGAGTGATG 1489 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 1428 ATCCTTCTTCTTGATGTTGCGCCACTCACTTTGGGAATCGAGACTGTAGGAGGAGTGATG 1487 Query 1490 ACAAAGTTGATCCCAAGAAACACGGTTATTCCAACCAAGAAATCTCAGGTTTTCACAACG 1549 |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1488 ACAAAGCTGATCCCGAGAAACACGGTTATTCCAACCAAGAAATCTCAGGTTTTCACAACG 1547 Query 1550 TACCAAGACCAGCAGACCACCGTCTCCATTCAGGTCTTTGAAGGTGAAAGAAGTCTCACC 1609 |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 1548 TACCAAGACCAGCAGACCACCGTCTCCATTCAAGTCTTTGAAGGTGAACGAAGTCTCACA 1607 Query 1610 AAGGACTGCAGGCTACTCGGGAAATTCGACCTCACTGGAGTCCCACCGGCCCCAAGAGGA 1669 ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| Sbjct 1608 AAGGACTGCAGGCTACTCGGGAAATTCGACCTCACCGGAGTTCCACCAGCCCCAAGAGGA 1667 Query 1670 ACCCCTCAAATCGAGGTCACATTTGAAGTGGACGCCAACGGTATTCTTAATGTGAAAGCA 1729 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 1668 ACCCCTCAAATCGAGGTCACATTCGAAGTGGACGCCAACGGTATCCTTAATGTGAAAGCA 1727 Query 1730 GAGGACAAGGCGAGTGGTAAATCAGAGAAGATTACAATCACAAACGAGAAGGGTCGTCTG 1789 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1728 GAGGACAAGGCGAGTGGAAAATCAGAGAAGATTACAATCACAAACGAGAAGGGTCGTCTG 1787 Query 1790 AGCCAAGAAGAGATTGACCGGATGGTGAAGGAGGCAGAGGAGTTTGCAGAGGAAGACAAG 1849 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 1788 AGCCAAGAAGAGATTGACCGGATGGTAAAGGAGGCAGAGGAGTTTGCAGAGGAGGACAAG 1847 Query 1850 AAGGTGAAGGAGAAGATCGACGCCAGGAATGCCCTGGAGACATACGTGTACAACATGAAG 1909 ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1848 AAGGTGAAGGAGAGGATCGACGCCAGGAATGCCTTGGAGACATACGTGTACAACATGAAG 1907 Query 1910 AACCAAGTGAGCGACAAGGACAAGCTTGCAGACAAATTGGAAGGAGATGAGAAGGAGAAG 1969 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1908 AACCAAGTGAGCGACAAGGACAAGCTTGCAGACAAATTGGAAGGAGATGAAAAGGAGAAG 1967 Query 1970 ATAGAAGCAGCGACGAAAGAGGCCTTGGAGTGGCTCGACGAGAACCAAAACTCAGAGAAA 2029 || |||||||| || |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1968 ATTGAAGCAGCAACCAAAGAGGCCTTGGAGTGGCTAGACGAGAACCAAAACTCAGAGAAA 2027 Query 2030 GAAGAGTACGACGAGAAGCTCAAGGAGGTAGAGGCAGTGTGTAACCCAATCATCACAGCA 2089 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 2028 GAAGAGTACGACGAGAAGCTCAAGGAGGTAGAAGCAGTGTGTAACCCAATCATCACGGCA 2087 Query 2090 GTTTACCAGAGATCAGGCGGAGCACCAGGTGCAGGAGGAGAATCATCGACTGAGGAGGAA 2149 |||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 2088 GTTTACCAGAGATCTGGCGGAGCACCAGGTGCAGGAGGAGAATCAGCGACTGAGGAAGAA 2147 Query 2150 GATGAGTCTCACGATGAGCTCTAGATGTCTTCT-----GTTATTGTTAATTTATTAAACC 2204 ||||||||||||||||||||||||||||||| | ||||||||| |||| ||||||| Sbjct 2148 GATGAGTCTCACGATGAGCTCTAGATGTCTTTTTTTTTGTTATTGTTGATTTCTTAAACC 2207 Query 2205 AT-AGAGACAAGTTTTGAGGATGAAACGTCGtttttgttttttgtatttggtttcctttt 2263 || ||||||||||||||||||||||| ||| ||||| |||| || ||| | Sbjct 2208 ATTAGAGACAAGTTTTGAGGATGAAAGGTC-TTTTT-TTTT--GT-TTT--T-------- 2252 Query 2264 tcttatggatttttAGGAAAGGGGAGAGATTAAGTAGCGTCCCTTCTTTAGTCTCCCTGG 2323 |||||||||||||||||| |||||||||||||| ||||||||| |||||||||| Sbjct 2253 ----ATGGATTTTTAGGAAAGGAGAGAGATTAAGTAGTGTCCCTTCTGTAGTCTCCCT-- 2306 Query 2324 ACGTTCTCTTTATGTTCATCTGATAACTTTACTTCTTCATAACAAATACCTTTTTTCTAT 2383 | |||||||||||||||||||| ||||||||| ||||||||||| |||||||||| Sbjct 2307 ---T-CTCTTTATGTTCATCTGATACCTTTACTTC---ATAACAAATACGTTTTTTCTAT 2359 > Ahg924468 jgi|Araly1|924468|scaffold_200029.1 Length=2030 Score = 2580 bits (1397), Expect = 0.0 Identities = 1790/1982 (90%), Gaps = 17/1982 (1%) Strand=Plus/Plus Query 200 GTGCTTGCGATCATCTTCTTCGGATGT-TTATTTGCGTTTTCCACTGCAAAAGAAGAGGC 258 |||||||||||| |||| || |||||| || |||||| |||| | ||| ||||||||||| Sbjct 39 GTGCTTGCGATCGTCTTGTTAGGATGTCTT-TTTGCGATTTCAATTGCTAAAGAAGAGGC 97 Query 259 TACGAAGTTAGGATCAGTTATTGGGATAGATCTTGGTACCACTTACTCTTGTGTTGGTGT 318 ||||||||| ||||| ||||| || || |||||||||||||||||||||||||||||||| Sbjct 98 TACGAAGTTGGGATCTGTTATAGGAATTGATCTTGGTACCACTTACTCTTGTGTTGGTGT 157 Query 319 TTACAAGAATGGTCATGTTGAAATTATTGCCAATGACCAAGGAAACCGTATTACACCTTC 378 |||||| ||||| |||||||| || ||||||||||||||||| ||||||||||||||||| Sbjct 158 TTACAAAAATGGCCATGTTGAGATCATTGCCAATGACCAAGGTAACCGTATTACACCTTC 217 Query 379 ATGGGTTGGTTTTACTGACTCTGAAAGGCTCATTGGTGAGGCTGCTAAGAATCAGGCGGC 438 ||||| ||||| || || ||||| ||| | |||||||| |||||||||||||||||||| Sbjct 218 CTGGGTGGGTTTCACCGATTCTGAGAGGTTGATTGGTGAAGCTGCTAAGAATCAGGCGGC 277 Query 439 TGTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAATTTGAGGA 498 ||| ||||| |||||||||||||||||||| ||||||||||||||| ||||||| ||||| Sbjct 278 TGTCAATCCAGAGAGGACTGTCTTCGACGTCAAGAGATTGATCGGGAGAAAATTCGAGGA 337 Query 499 CAAGGAGGTTCA-AAAGGACAGGAAACTTGTACCTTACCAGATTGTGAACAAGGATGGTA 557 ||| ||||| || ||| |||| ||||||||| |||||| |||||||||||||||| || | Sbjct 338 CAAAGAGGTGCAGAAA-GACATGAAACTTGTTCCTTACAAGATTGTGAACAAGGAAGGCA 396 Query 558 AGCCATACATTCAAGTCAAGATCAAGGATGGTGAGACTAAGGTTTTCAGTCCTGAGGAGA 617 |||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 397 AGCCTTACATTCAAGTCAAGATCAAGGATGGTGAGACCAAGGTTTTCTCTCCTGAGGAGA 456 Query 618 TCAGTGCCATGATTCTGACTAAGATGAAGGAGACAGCCGAAGCCTACCTTGGAAAGAAAA 677 |||||||||||||||| ||||||||||||||||| || ||||| |||||||| ||||||| Sbjct 457 TCAGTGCCATGATTCTTACTAAGATGAAGGAGACTGCTGAAGCATACCTTGGCAAGAAAA 516 Query 678 TCAAGGACGCTGTTGTCACTGTTCCAGCTTACTTCAATGATGCTCAAAGGCAAGCTACCA 737 ||||||||||||||||||||||||||||||||||||||||||| || ||||| || || | Sbjct 517 TCAAGGACGCTGTTGTCACTGTTCCAGCTTACTTCAATGATGCCCAGAGGCAGGCCACAA 576 Query 738 AGGATGCCGGTGTTATTGCTGGGCTCAATGTTGCTAGAATCATCAACGAACCTACTGCTG 797 ||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 577 AGGATGCTGGTGTTATCGCTGGGCTCAATGTTGCTAGAATCATCAACGAACCCACTGCTG 636 Query 798 CTGCTATTGCCTACGGTCTTGATAAGAAGGGTGGTGAGAAGAACATCCTTGTATTTGACC 857 ||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 637 CTGCTATTGCCTATGGTCTGGATAAGAAGGGTGGTGAGAAGAACATCCTTGTCTTTGACC 696 Query 858 TTGGTGGTGGTACTTTTGATGTCAGTGTCTTGACCATTGATAACGGAGTGTTTGAGGTTC 917 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 697 TTGGTGGTGGTACTTTTGATGTCAGTGTCTTGACCATTGATAATGGAGTGTTTGAGGTTC 756 Query 918 TCTCCACAAATGGTGACACTCACTTGGGAGGTGAGGACTTTGACCACAGGATCATGGAGT 977 |||||||||||||||| || |||||||||||||||||||||||||||||| ||||||| | Sbjct 757 TCTCCACAAATGGTGATACCCACTTGGGAGGTGAGGACTTTGACCACAGGGTCATGGATT 816 Query 978 ACTTCATCAAGTTAATTAAGAAGAAGCACCAGAAGGACATCAGCAAGGACAACAAGGCTC 1037 | ||||||||| | || ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 817 ATTTCATCAAGCTGATCAAGAAGAAGCACCAGAAGGACATCAGCAAGGACTACAAGGCTC 876 Query 1038 TTGGTAAGCTCCGAAGGGAATGTGAGAGGGCAAAGAGAGCTCTAAGCAGTCAGCACCAAG 1097 | ||||| |||||||||||||| ||||| || ||||||||||| ||||| |||||||||| Sbjct 877 TGGGTAAACTCCGAAGGGAATGCGAGAGAGCCAAGAGAGCTCTTAGCAGCCAGCACCAAG 936 Query 1098 TCCGTGTAGAGATTGAGTCACTCTTTGATGGTGTTGATTTATCTGAGCCACTCACCAGAG 1157 ||||||| ||||||||||| ||||| ||||| |||||| ||||||||||||||||||| Sbjct 937 TCCGTGTTGAGATTGAGTCCCTCTTCGATGGCACTGATTTCTCTGAGCCACTCACCAGAG 996 Query 1158 CTCGTTTCGAGGAGCTTAACAATGATTTGTTCAGGAAGACCATGGGACCTGTGAAGAAGG 1217 | |||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||| Sbjct 997 CCCGTTTCGAGGAGCTGAACAATGACTTGTTCAGAAAGACAATGGGACCTGTGAAGAAGG 1056 Query 1218 CCATGGATGATGCCGGTCTACAGAAGAGCCAGATCGATGAGATTGTCCTTGTTGGTGGAA 1277 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1057 CCATGGATGATGCTGGTCTACAGAAGAGCCAGATCGATGAGATTGTACTTGTTGGTGGAA 1116 Query 1278 GCACCAGGATCCCAAAGGTTCAGCAACTGTTGAAGGACTTCTTTGAAGGTAAAGAGCCAA 1337 | || |||||||||||||| || ||||| |||||||||||||||||||| |||||||||| Sbjct 1117 GTACTAGGATCCCAAAGGTACAACAACTATTGAAGGACTTCTTTGAAGGGAAAGAGCCAA 1176 Query 1338 ACAAGGGTGTGAACCCCGACGAGGCTGTTGCCTATGGTGCTGCTGTTCAGGGTGGTATTT 1397 ||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| | Sbjct 1177 ACAAGGGTGTGAACCCCGATGAGGCTGTTGCTTATGGTGCTGCCGTTCAGGGAGGTATAT 1236 Query 1398 TGAGCGGAGAAGGCGGTGATGAGACCAAAGATATCCTTCTTCTTGATGTTGCGCCACTCA 1457 ||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||||| Sbjct 1237 TGAGCGGAGAAGGTGGTGATGAAACCAAAGATATCCTTCTTCTGGACGTTGCGCCACTCA 1296 Query 1458 CTTTAGGTATCGAGACTGTAGGAGGAGTGATGACAAAGTTGATCCCAAGAAACACGGTTA 1517 |||| ||||| |||||||| |||||||||||||||||| ||||||| ||||||||||| | Sbjct 1297 CTTTGGGTATTGAGACTGTCGGAGGAGTGATGACAAAGCTGATCCCGAGAAACACGGTCA 1356 Query 1518 TTCCAACCAAGAAATCTCAGGTTTTCACAACGTACCAAGACCAGCAGACCACCGTCTCCA 1577 |||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||| Sbjct 1357 TTCCAACCAAGAAATCTCAGGTGTTCACGACATACCAAGACCAGCAGACCACTGTCTCCA 1416 Query 1578 TTCAGGTCTTTGAAGGTGAAAGAAGTCTCACCAAGGACTGCAGGCTACTCGGGAAATTCG 1637 | |||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||| Sbjct 1417 TCCAGGTCTTTGAAGGTGAACGAAGTCTCACCAAAGACTGCAGGCTGCTCGGGAAATTCG 1476 Query 1638 ACCTCACTGGAGTCCCACCGGCCCCAAGAGGAACCCCTCAAATCGAGGTCACATTTGAAG 1697 |||||| |||| ||||||| || ||||| || |||||||| ||||| |||||||| |||| Sbjct 1477 ACCTCAATGGAATCCCACCAGCTCCAAGGGGGACCCCTCAGATCGAAGTCACATTCGAAG 1536 Query 1698 TGGACGCCAACGGTATTCTTAATGTGAAAGCAGAGGACAAGGCGAGTGGTAAATCAGAGA 1757 |||| |||||||||||||| || |||||||||||||||||||| ||||| |||||||||| Sbjct 1537 TGGATGCCAACGGTATTCTCAACGTGAAAGCAGAGGACAAGGCAAGTGGGAAATCAGAGA 1596 Query 1758 AGATTACAATCACAAACGAGAAGGGTCGTCTGAGCCAAGAAGAGATTGACCGGATGGTGA 1817 |||| |||||||| || |||||||| ||||||||||||||||||||||| |||||||||| Sbjct 1597 AGATCACAATCACGAATGAGAAGGGACGTCTGAGCCAAGAAGAGATTGAACGGATGGTGA 1656 Query 1818 AGGAGGCAGAGGAGTTTGCAGAGGAAGACAAGAAGGTGAAGGAGAAGATCGACGCCAGGA 1877 |||||||||||||||||||||| |||||||||||||| ||||||| ||| || || |||| Sbjct 1657 AGGAGGCAGAGGAGTTTGCAGATGAAGACAAGAAGGTAAAGGAGAGGATTGATGCAAGGA 1716 Query 1878 AT-GCCCTGGAGACATACGTGTACAACATGAAGAACCAAGTGAGCGACAAGGACAAGCTT 1936 | ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1717 ACAGCC-TGGAGACATACGTGTACAACATGAAGAACCAAGTGAACGACAAGGACAAGCTT 1775 Query 1937 GCAGACAAATTGGAAGG-AGATGAGAAGGAGAAGATAGAAGCAGCGACGAAAGAGGC-CT 1994 |||||||||||||| || |||||| ||||||||||| ||||| |||||||||||||| || Sbjct 1776 GCAGACAAATTGGA-GGCAGATGACAAGGAGAAGATCGAAGCCGCGACGAAAGAGGCTCT 1834 Query 1995 TGGAGTGGCTCGACGAGAACCAAAACT-CAGAGAAAGAAGAGTACGACGAGAAGCTCAAG 2053 | |||||||||| || ||||| || | ||||||||||||| ||||| |||||||||||| Sbjct 1835 AG-AGTGGCTCGATGAAAACCAGAA-TGCAGAGAAAGAAGATTACGATGAGAAGCTCAAG 1892 Query 2054 GAGGTAGAGGCAGTGTGTAACCCAATCATCACAGCAGTTTACCAGA-GATCAGGCGGAGC 2112 ||||| ||||| || ||||| || |||||||| || |||||||| | | || || || || Sbjct 1893 GAGGTTGAGGCTGTTTGTAATCCGATCATCACTGCGGTTTACCAAAAG-TCGGGTGGGGC 1951 Query 2113 ACCAGGTGCAGGAGGAGAATCATCGACTGAGGAGGAAGATGAGTCTCACGATGAGCTCTA 2172 ||| || | ||| | | | | ||||| || ||||| ||||| ||||||||||||||||| Sbjct 1952 ACC-GG-G-AGGTGAATCAGCTTCGACAGATGAGGACGATGAATCTCACGATGAGCTCTA 2008 Query 2173 GA 2174 || Sbjct 2009 GA 2010 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89931068445 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5