BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G42030.1 Length=1070 Score E Sequences producing significant alignments: (Bits) Value Ahg493780 jgi|Araly1|493780|fgenesh2_kg.7__3213__AT5G42030.1 1565 0.0 > Ahg493780 jgi|Araly1|493780|fgenesh2_kg.7__3213__AT5G42030.1 Length=969 Score = 1565 bits (847), Expect = 0.0 Identities = 939/981 (96%), Gaps = 16/981 (2%) Strand=Plus/Plus Query 20 TGTGTGTATAGTGTCTCCACTTGGATCTTTCTTACTTACTCCATTATCTTCTTCT-C-TC 77 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 1 TGTGTGTATAGTGTCTCCACTTGGATCTTTCTTACTTACTCCATTATCTTCTTCTCCTTC 60 Query 78 TCT-T-TCCCTCATCTCATTAATGGCGAGCTCTACATCTTTAGCGATAGTTCTTCATCAA 135 ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCTCTCTCCCTCATCTCATTAATGGCGAGCTCTACATCTTTAGCGATAGTTCTTCATCAA 120 Query 136 TCTTCCAATCATGACGAACTCTTCATGAAGCAAACTCTTCAATTCTCAGAAACCCTCAAG 195 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 121 TCTTCCAATCATGACGAACTCTTCATGAAGCAAACTCTTCAATTCTCAGAAACTCTCAAG 180 Query 196 GATTTAAAGAATCTGCGGAAACAGTTATACTCAGCAGCTGAGTACTTCGAAACATCTTAT 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GATTTAAAGAATCTGCGGAAACAGTTATACTCAGCAGCTGAGTACTTCGAAACATCTTAT 240 Query 256 GGCAAAGCAGAACACAAAGAAACAGTGATAGAGACGTTGAAAGAGTATGCAGCAAAGGCA 315 ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 241 GGCAAAGAAGAACACAAAGAAACAGTGATAGAGACATTGAAAGAGTATGCAGCAAAGGCA 300 Query 316 GTAGTGAACACAGTGGATCATCTTGGTTCTGTCTCTGACAAATTCAACTCTTTTCTCTCT 375 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 301 GTAGTGAACACAGTGGATCATCTTGGTTTTGTCTCTGACAAATTCAACTCTTTTCTCTCT 360 Query 376 GATAACTCAACTCATTTCTCCACCACTCATCTTCGTTTATCTTCTCTTGAACAAAGGATG 435 ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 361 GATAACTCAACCCATTTCTCCACCACTCATCTCCGTTTATCTTCACTTGAACAAAGGATG 420 Query 436 AGACTATGCAGAGATTACATGGGGAAGAGTGGCACTCATCAGCATTTGCTTCTATTTCAA 495 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 421 AGACTATGCAGAGATTACATGGGGAAGAGTGGGACTCATCAGCATTTGCTTCTATTTCAA 480 Query 496 TATCCTCGCCATCATAAGCGTTACTTCTTCCCTCAACAAGGAAGAGGCACAAGTTTCTCT 555 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TATCCTCGCCATCATAAGCGTTACTTCTTCCCTCAACAAGGAAGAGGCACAAGTTTCTCT 540 Query 556 GCAGGAGATGACTCACACCGGTTCACGAGTGCTGTTCGATCAACAATACTAGAAAACCTC 615 |||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 541 GCAGGAGATGACTCGCACCGGTTCAAGAGTGCTGTTCGAACAACAATACTAGAAAACCTC 600 Query 616 CCAAATACTGCAAGGAAAGCTAACAAGACAGGAAGCTTCTCTTTTGCACCTATCGTACAC 675 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 601 CCAAATACTGCAAGGAAAGCTAACAAGACAGGAAGCTTCTCTTTTGCACCCATCATACAC 660 Query 676 AACAACATCAACAACAGAACACCAAATAAGAGATCAAACTCTCCTATGAGATTCCCTCTC 735 ||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 661 AACAACATCGACAACAGAACACCAAATAAAAGAACAAACTCTCCTATGAGATTCCCTCTC 720 Query 736 TTACGTTCAGGATCTCTACTGAAACGTTCAAGCTCCCCAAGCCAACCAAAGAAACCGCCC 795 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 TTACGTTCAGGATCTCTACTGAAACGTTCAAGCTCCCCAAGCCAACCAAAGAAACCGGTA 780 Query 796 TTAGCGTTACCGGAACCTCAAAGAGCTATATCTGTGTCGAGAAATACAGAGATAGTGGAG 855 ||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 781 TTACCCTTACCGGAACCTCAAAGAGCGATATCTGTGTCGAGAAATACAGAGATAGTGGAG 840 Query 856 ATAAAGCAATCTTCATCGCGAAAAGGGAAGAAGATTCTGATGTTCAAGGCATTGATGAGT 915 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 841 ATAAAGCAATCTTCATCGCGAAAAGGGAAGAAGATTCTGATGCTCAAGGCATTGATGGGT 900 Query 916 ATGAGCAAGTCGAGAAACTAAAATCTCTCCTTGTATTTGATAAATGAAAAGATTTGTACA 975 ||||||||||| |||||||||||||||||| | || || |||||||||||| Sbjct 901 ATGAGCAAGTCCAGAAACTAAAATCTCTCC----A----AT----GACAAGATTTGTACA 948 Query 976 AAACTAATGTGAAATAAGAGA 996 ||||||||||||||||||||| Sbjct 949 AAACTAATGTGAAATAAGAGA 969 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39838448265 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5