BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G42050.1 Length=1560 Score E Sequences producing significant alignments: (Bits) Value Ahg493778 jgi|Araly1|493778|fgenesh2_kg.7__3211__AT5G42050.1 1969 0.0 > Ahg493778 jgi|Araly1|493778|fgenesh2_kg.7__3211__AT5G42050.1 Length=1485 Score = 1969 bits (1066), Expect = 0.0 Identities = 1264/1352 (93%), Gaps = 44/1352 (3%) Strand=Plus/Plus Query 1 ATATTTCTCACCCATTTTTCACCAATTTCTCTCCACTTAAAACC-AACCCCAATTCTCAC 59 ||| |||||||||||||||||||||||||||| ||||||||| |||||||| |||||| Sbjct 1 ATAATTCTCACCCATTTTTCACCAATTTCTCT--GCTTAAAACCAAACCCCAAATCTCAC 58 Query 60 CAAAAATCGCAAAAAAGATTTCAACTTTCGATAAACCCAGATCGAAAAATCAGATTTTTC 119 |||||||||||||||| |||||||||||||||| | |||||||||||||||| |||||| Sbjct 59 AAAAAATCGCAAAAAAGCTTTCAACTTTCGATAATCTCAGATCGAAAAATCAGGTTTTTC 118 Query 120 CAGATCAATCAGAGAGTTAGAGATGGAGTATAATAACAACAATCAGCAATCTTTTTGGCA 179 ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct 119 CAGATCAATCAGAGA---AGAGATGGAGAATAATAACAACAATCAGCAATCTTTTTGGCA 175 Query 180 GTTCAGCGACCAGCTGAGAGTTCAGACACCGAATCTAGCGAATCTGTCTCTCAACGACTC 239 |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 176 GTTCAGCGACCAATTGAGAGTTCAGACACCAAATCTAGCGAATCTGTCTCTCAACGACTC 235 Query 240 GATCTGGAGCACAAACTCTGTCTTCAAAGAGCGTCGAAACTTAGACATAGCCGCCACCAC 299 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| | Sbjct 236 GATCTGGAGCACAAACTCTGTCTTCAAAGAGCGTCGAAACTTGGACATCGCCGCCACCGC 295 Query 300 CGACAAGAACAACAACCAGATCGACTATTATCAGAAGAAGACAACTTCCGACAACATCAA 359 ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 296 CGACAAG---AACAACCAGATCGACTATTATCAGAAGAAGACAATTTCCGACAACATCAA 352 Query 360 TTCCAACTGGAACTGGAAGTCTTCTGGTTCAAACAACGACATGGGTTTAGGATTCGGACC 419 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 353 TTCCAACTGGAACTGGAAGTCTTCTGGTTCAAACAACGACATGGGTTTAGGTTTCGGACC 412 Query 420 TGTGGGTTCAAAATCCACCGTCGATTTAAACCCAATCGACAAATTCAACTCACCGTTCAA 479 ||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 413 CGTGGGATCAAAATCCACCGTCGATTTTAACCCAATCGACAAATTCAACACACCGTTCAA 472 Query 480 CGACACGTGGAAATTCAACTCAGTCAACGTTAACGTTAACGGTTACTCACCGTCAAGCGC 539 |||||| ||||||||||| | || | | | | ||| | | | || Sbjct 473 CGACACCTGGAAATTCAA--C--TC-A-G-T--C---AAC-G----T-----T-AA---- 505 Query 540 CGTTAACGGAGATTTCAACAAAGGGGTTTACACGTCGATGAAGAAGTATGGGTACAACGT 599 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 506 CGTTAACGGAGATTTCAACAAAGGGGTTTACACGTCGATGAACAAGTATGGATACAACGT 565 Query 600 CAATCTAAAG---AACAACAACAAGAACAAAGGAATCGATGAAGATCATCAGATTCAGAA 656 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 566 GAATCTAAAGAACAACAACAACAAGAACAAAGGAATCGATGAAGATCATCAGATTCAGAA 625 Query 657 AGGTGGGAAGAAGAACAGAAAGAATCAGCAGAACAATAATAACCAGAGGAACGAAGACGA 716 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 626 AGGTGGGAAGAAGAACAGAAAGAATCATCAGAACAACAATAACCAGAGGAACGAAGACGA 685 Query 717 CAAGAACAATGGTTTGGACAAGAGGTTTAAGACTCTTCCTCCAGCAGAAGCTTTGCCAAG 776 |||||| |||||| | |||||||||||||||||||||||||||||||| || |||||||| Sbjct 686 CAAGAATAATGGTGTAGACAAGAGGTTTAAGACTCTTCCTCCAGCAGAGGCGTTGCCAAG 745 Query 777 AAACGAAACCATTGGTGGTTACATCTTTGTCTGCAACAACGATACCATGGAAGAGAATCT 836 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 746 AAACGAAACCATTGGTGGTTACATCTTTGTCTGCAACAACGATACCATGGAAGAGAACCT 805 Query 837 CAAACGCCAGCTTTTCGGATTGCCACCAAGATACAGGGACTCGGTTAGAGCGATAACTCC 896 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 806 CAAACGCCAGCTTTTCGGATTGCCACCAAGATACAGGGACTCGGTGAGAGCGATAACTCC 865 Query 897 AGGACTTCCTCTGTTTCTTTACAACTACTCCACTCACCAACTTCATGGAATCTACGAGGC 956 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 866 AGGACTTCCTCTGTTTCTTTACAACTACTCCACTCACCAACTTCATGGAATCTACGAAGC 925 Query 957 AGCTAGCTTCGGAGGAACAAACATTGAGTTGAATGCTTTTGAAGACAAGAAATGTCCTGG 1016 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 926 AGCTAGCTTCGGAGGAACCAACATTGAGTTGAATGCTTTTGAAGACAAGAAATGTCCTGG 985 Query 1017 CGAATCTCGTTTCCCTGCTCAGGTGAGGGCCATAACGAGGAAAGTATGTTTGCCACTGGA 1076 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 986 CGAATCTCGTTTCCCTGCTCAGGTTAGGGCCATAACGAGGAAAGTGTGTTTGCCACTGGA 1045 Query 1077 AGAAGATTCTTTCCGACCCATTTTGCACCACTACGACGGTCCTAAGTTCCGACTCGAACT 1136 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1046 AGAAGATTCTTTCCGACCCATTTTGCACCACTACGACGGTCCTAAGTTCCGGCTCGAACT 1105 Query 1137 CAGTGTCCCTGAGGTGCTTTCTCTATTGGACATTTTTGCTGACCAAAACCCTTGAATTGG 1196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1106 CAGTGTCCCTGAGGTGCTTTCTCTATTGGACATTTTTGCTGACCAAAACCCTTGAATTGG 1165 Query 1197 GTAATACCAATGAAGAACACAAAAC-AGTGGTTTGTTACTTCAAATCCAGAAAGAGAGAG 1255 | | |||||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 1166 G-A-TACCAATGAAGAACACAAAAATAGTGGTTTGTTACTTGAAATCCAGAAAGAGAGAT 1223 Query 1256 ATACCCC-ATTATACATATATGATTATAAGGAGGAGTATTAATAATAATTGTCTGAAGAA 1314 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1224 ATACCCCCATTATACATATATGATTATAAGGAGGAGTATTAATAATAATTGTCTGAAGAA 1283 Query 1315 ATGGTATTTT-ACTAGTTTATACAGTTTCTTT 1345 |||||||||| ||||||||||| ||||| ||| Sbjct 1284 ATGGTATTTTTACTAGTTTATATAGTTTTTTT 1315 Score = 226 bits (122), Expect = 4e-58 Identities = 156/171 (91%), Gaps = 7/171 (4%) Strand=Plus/Plus Query 1378 TAGAAGATGTGCTATTTTTGTGTGGGTGGATGAAGAATAGATCTCATCTCCGC---GCtt 1434 ||||||||||||||||||||||||||||||||||||||||||||||||||| | | || Sbjct 1316 TAGAAGATGTGCTATTTTTGTGTGGGTGGATGAAGAATAGATCTCATCTCCACTTTGTTT 1375 Query 1435 ttttctttttGT--AAATTATATAAAATAACATATGTACAACCCCAAAAATAGGGAGAAA 1492 |||| ||||||| |||||| |||||||||||| ||||||||||||||| ||||| |||| Sbjct 1376 TTTTTTTTTTGTGTAAATTAAATAAAATAACATTTGTACAACCCCAAAA-TAGGGGGAAA 1434 Query 1493 -TGAGATGATGAACTCTTATCAATTTGTGTTTGATATTTTTATTATTGCTC 1542 |||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 1435 ATGAGATGATGAACTCTTATCAATTTGTGTTTGATATTTGTATAATTGCTC 1485 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58430435830 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5