BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G42070.1 Length=705 Score E Sequences producing significant alignments: (Bits) Value Ahg330331 jgi|Araly1|330331|fgenesh1_pm.C_scaffold_7002558 678 0.0 > Ahg330331 jgi|Araly1|330331|fgenesh1_pm.C_scaffold_7002558 Length=510 Score = 678 bits (367), Expect = 0.0 Identities = 424/451 (94%), Gaps = 5/451 (1%) Strand=Plus/Plus Query 77 ATGGCGAATTCCATTTCATCAATATCTCTGCCTCGATGTTTCATCTTCAACAATGGTAGT 136 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 ATGGCGAATTCCATTTCATCAATATCTCTTCCTCGATGTTTCATCTTCAACAATGGTAGT 60 Query 137 CACAAATCAAGGCCATGGCCAAGCTCAAGCAGTTTCTTTCTCAACAAATCATCAAAGCAT 196 |||||||||||||||||||| |||||||||||| || |||||||||| |||||||| ||| Sbjct 61 CACAAATCAAGGCCATGGCCGAGCTCAAGCAGTCTCATTCTCAACAACTCATCAAATCAT 120 Query 197 CATCCTCATCCACTACTCTCTCTTTCTTCTTCGCC-GTCTTCCGTCGTAGAAACTGATAA 255 |||| |||| | ||||||||||||||||||||||| | |||||||||||||||||| | | Sbjct 121 CATCATCATTCTCTACTCTCTCTTTCTTCTTCGCCAG-CTTCCGTCGTAGAAACTGGTGA 179 Query 256 TGACGACGACAACGACCTCACTTTCAGTGGTTGCAGAGCGTGTGGGAAAGAAGAGAAAGA 315 |||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 180 TGACGACG---ACGACCTCACTTTCAGTGGTTGCAGAGGGTGTGGGAAAGAGGAGAAAGA 236 Query 316 GAGTGGGTGTAATGGTGACGGACGGATTCAAGGTGGCATTGCAACTGTCCCCGGTTTCGG 375 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 237 GAGTGGGTGTAAGGGTGACGGACGGATTCAAGGTGGCATTGCAACTGTCCCTGGTTTCGG 296 Query 376 TTGGTGGCCAATTAAGGCTTACAGGCCTTGTCCCGCGTTTGTTGAGGCCGGAGGTAGATA 435 ||||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||| Sbjct 297 TTGGTGGCCCATTAAGGCTTACAGACCTTGTCCCGCGTTCGTGGAGGCCGGAGGTAGATA 356 Query 436 CCGCCGCATAGGGCAGAGCATGGACGAGGTTGCATTTGGTCGTGGTGACTCTAAATCCTC 495 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 CCGCCGCATAGGACAGAGCATGGACGAGGTTGCATTTGGTCGTGGTGACTCTAAATCCTC 416 Query 496 CACTTCTGTAGACACCAGTGATTCACTACTA 526 ||||||| |||||||| |||||||||||||| Sbjct 417 CACTTCTATAGACACCGGTGATTCACTACTA 447 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25923583560 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5