BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G42070.1

Length=705
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg330331 jgi|Araly1|330331|fgenesh1_pm.C_scaffold_7002558           678    0.0  


> Ahg330331 jgi|Araly1|330331|fgenesh1_pm.C_scaffold_7002558
Length=510

 Score =  678 bits (367),  Expect = 0.0
 Identities = 424/451 (94%), Gaps = 5/451 (1%)
 Strand=Plus/Plus

Query  77   ATGGCGAATTCCATTTCATCAATATCTCTGCCTCGATGTTTCATCTTCAACAATGGTAGT  136
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1    ATGGCGAATTCCATTTCATCAATATCTCTTCCTCGATGTTTCATCTTCAACAATGGTAGT  60

Query  137  CACAAATCAAGGCCATGGCCAAGCTCAAGCAGTTTCTTTCTCAACAAATCATCAAAGCAT  196
            |||||||||||||||||||| |||||||||||| || |||||||||| |||||||| |||
Sbjct  61   CACAAATCAAGGCCATGGCCGAGCTCAAGCAGTCTCATTCTCAACAACTCATCAAATCAT  120

Query  197  CATCCTCATCCACTACTCTCTCTTTCTTCTTCGCC-GTCTTCCGTCGTAGAAACTGATAA  255
            |||| |||| | ||||||||||||||||||||||| | |||||||||||||||||| | |
Sbjct  121  CATCATCATTCTCTACTCTCTCTTTCTTCTTCGCCAG-CTTCCGTCGTAGAAACTGGTGA  179

Query  256  TGACGACGACAACGACCTCACTTTCAGTGGTTGCAGAGCGTGTGGGAAAGAAGAGAAAGA  315
            ||||||||   ||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct  180  TGACGACG---ACGACCTCACTTTCAGTGGTTGCAGAGGGTGTGGGAAAGAGGAGAAAGA  236

Query  316  GAGTGGGTGTAATGGTGACGGACGGATTCAAGGTGGCATTGCAACTGTCCCCGGTTTCGG  375
            |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  237  GAGTGGGTGTAAGGGTGACGGACGGATTCAAGGTGGCATTGCAACTGTCCCTGGTTTCGG  296

Query  376  TTGGTGGCCAATTAAGGCTTACAGGCCTTGTCCCGCGTTTGTTGAGGCCGGAGGTAGATA  435
            ||||||||| |||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct  297  TTGGTGGCCCATTAAGGCTTACAGACCTTGTCCCGCGTTCGTGGAGGCCGGAGGTAGATA  356

Query  436  CCGCCGCATAGGGCAGAGCATGGACGAGGTTGCATTTGGTCGTGGTGACTCTAAATCCTC  495
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  357  CCGCCGCATAGGACAGAGCATGGACGAGGTTGCATTTGGTCGTGGTGACTCTAAATCCTC  416

Query  496  CACTTCTGTAGACACCAGTGATTCACTACTA  526
            ||||||| |||||||| ||||||||||||||
Sbjct  417  CACTTCTATAGACACCGGTGATTCACTACTA  447



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25923583560


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5