BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42100.1
Length=1638
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947488 jgi|Araly1|947488|scaffold_703717.1 1997 0.0
> Ahg947488 jgi|Araly1|947488|scaffold_703717.1
Length=1321
Score = 1997 bits (1081), Expect = 0.0
Identities = 1248/1328 (94%), Gaps = 13/1328 (1%)
Strand=Plus/Plus
Query 24 ctctctctctctctctctcacttcatctatggcttcttcttc-tctgcagtctctcttct 82
||||||||||||||||||||||||||| ||||||||| |||| ||| |||| ||||||||
Sbjct 2 CTCTCTCTCTCTCTCTCTCACTTCATCCATGGCTTCTCCTTCTTCT-CAGTTTCTCTTCT 60
Query 83 ctctgttttgccttgctct-gttctctcttcctctcatcgtctcctcCATCGGCATCAAC 141
||||||| ||||||||||| || |||||||||| |||||||||||||||||||||||||
Sbjct 61 CTCTGTTGTGCCTTGCTCTCCTT-TCTCTTCCTCACATCGTCTCCTCCATCGGCATCAAC 119
Query 142 TATGGCCAGGTCGCTAACAACCTTCCTCCCCCTAAAAACGTCATCCCTCTCCTCAAGTCT 201
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 120 TATGGCCAGGTCGCTAACAACCTTCCTCCCCCAAAAAACGTCATCCCTCTCCTCAAGTCT 179
Query 202 GTGGGAGCTACAAAAGTCAAGCTCTATGACGCCGATCCACAAGCCCTACGTGCCTTCGCC 261
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 180 GTGGGAGCTACAAAAGTCAAGCTCTATGACGCCGATCCACAAGCCCTCCGTGCCTTCTCC 239
Query 262 GGCTCCGGCTTCGAGCTCACCGTGGCCCTCGGTAACGAGTACCTGGCTCAGATGAGCGAC 321
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||
Sbjct 240 GGCTCCGGCTTCGAGCTCACCGTGGCCCTCGGCAACGAGTACCTGGCCCAGATGACCGAC 299
Query 322 CCTATTAAAGCCCAAGGCTGGGTGAAGGAGAACGTCCAAGCTTACCTCCCAAACACCAAG 381
|||| ||||||||||| |||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 300 CCTAATAAAGCCCAAGCCTGGGTGAAGGAGAACGTTCAAGCATACCTCCCCAACACCAAG 359
Query 382 ATCGTGGCCATCGTAGTGGGAAACGAAGTCCTCACCTCAAACCAGTCAGCCCTCACGGCA 441
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 360 ATCGTGGCCATCGTAGTGGGAAACGAAGTCCTCACCTCCAACCAATCAGCCCTCACGGCG 419
Query 442 GCCCTCTTCCCGGCTATGCAAAGCATCCACGGTGCTCTGGTGGATTGTGGCCTAAACAAG 501
|||||||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||
Sbjct 420 GCCCTCTTCCCGGCTATGCAGGGCATCCACGGCGCTCTGGTTGATTGTGGCCTGAACAAG 479
Query 502 CAGATCTTTGTGACGACGGCTCACTCACTAGCCATCTTGGATGTATCCTACCCTCCCTCG 561
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 480 CAGATCTTTGTGACGACGGCTCACTCACTGGCCATCTTGGATGTGTCCTACCCTCCCTCG 539
Query 562 GCCACTTCCTTCCGCCGCGACCTCCTCGGCTCCCTCACTCCCATCTTGGACTTCCACGTC 621
||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||
Sbjct 540 GCCACTTCCTTCCGCCGCGACCTTCTCAGCTCTCTCACTCCCATCTTGGACTTCCACGTC 599
Query 622 AAGACTGGCTCACCAATCCTCATCAACGCCTACCCTTTCTTCGCCTACGAAGAAAACCCC 681
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAGACAGGCTCACCAATCCTCATCAACGCCTACCCTTTCTTCGCCTACGAAGAAAACCCC 659
Query 682 AAACACGTTTCTCTCGACTTCGTACTCTTCCAACCAAATCAAGGCTTCACCGATCCTGGC 741
|||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 660 AAACACGTCTCTCTCGACTTCGTCCTCTTCCAACCAAATCAAGGCTTCACCGACCCTGGC 719
Query 742 TCTAATTTCCACTACGACAACATGCTCTTCGCTCAGGTCGACGCAGTCTATCACGCTCTT 801
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 720 TCTAATTTCCACTACGACAACATGCTCTTCGCTCAGGTCGACGCAGTCTATCACGCCCTT 779
Query 802 GACGCTGTCGGCATCAGCTACAAGAAAGTTCCCATTGTCGTCTCCGAGACCGGATGGCCT 861
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 780 GACGCTGTCGGCATCAGCTACAAGAAAGTCCCCATAGTCGTCTCCGAGACCGGATGGCCT 839
Query 862 TCCAACGGTGACCCGCAAGAAGTCGGAGCCACCTGCGACAATGCTCGCAAGTACAATGGG 921
||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||
Sbjct 840 TCCAACGGTGACCCGCAGGAGGTTGGAGCAACCTGCGACAATGCTCGCAAGTACAATGGG 899
Query 922 AATCTGATCAAGATGATGATGAGCAAGAAGATGAGGACGCCTATACGACCTGAGTGCGAT 981
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 900 AATCTGATCAAGATGATGATGAGCAAGAAAATGAGGACGCCCATTCGACCTGAGTGCGAT 959
Query 982 CTCACCATCTTCGTCTTTGCTCTCTTTAACGAGAACATGAAGCCTGGACCAACCTCCGAG 1041
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 960 CTCACCATCTTTGTCTTTGCTCTCTTCAACGAGAACATGAAGCCTGGACCCACCTCCGAG 1019
Query 1042 AGGAACTACGGTCTCTTCAACCCTGACGGAACTCCGGTTTACTCACTTGGGATCAAGACC 1101
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1020 AGGAACTACGGTCTCTTCAAACCTGACGGAACTCCGGTTTACTCTCTTGGGATCAAGACT 1079
Query 1102 TCTTCCACTCATAGTAGTGGTAGTGGTAGCAGCAACTCCACTGGTGGTAGTAGCAGTGGC 1161
|| |||||||||| ||||||||| |||||||||||||||||||||| | ||| ||
Sbjct 1080 TCCTCCACTCATACTAGTGGTAG------CAGCAACTCCACTGGTGGTAGTGGTAGTAGC 1133
Query 1162 GGTGGCGGTAACACTGGTGGCTCTTCCAGCGGTGGTGGCATCTATCAGCCAGTCACGGGT 1221
| |||||||||||||||||||||||| |||||||||| ||||| | ||| ||||||| |
Sbjct 1134 AGCGGCGGTAACACTGGTGGCTCTTCCGGCGGTGGTGGTATCTACCCGCCGGTCACGGAT 1193
Query 1222 AACCCATCACCGGATTACATGTCCATTTCCTCCGCCGGGGGAAAAGGCAGATTCGTTGAG 1281
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 AACCCATCGCCGGATTACATGTCCATTTCCTCCGCCGGGGGAAAAGGCAGATTCGTTGAG 1253
Query 1282 TGTGTGTTGTTCTTCTTCTTGCTTTGCATCATCAAGCTTCGGTTGTAAAAGC---TTCTC 1338
|||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct 1254 TGTGTGTTCTTCTTCTTCCTGCTTTGCATCATCAAGCTTCGGTTGTAAAAGCAGCTTCCC 1313
Query 1339 CACTAGAT 1346
||||||||
Sbjct 1314 CACTAGAT 1321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61401474940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5