BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G42130.1 Length=1541 Score E Sequences producing significant alignments: (Bits) Value Ahg949111 jgi|Araly1|949111|scaffold_800998.1 1941 0.0 Ahg932651 jgi|Araly1|932651|scaffold_400639.1 52.8 7e-06 > Ahg949111 jgi|Araly1|949111|scaffold_800998.1 Length=1279 Score = 1941 bits (1051), Expect = 0.0 Identities = 1205/1281 (94%), Gaps = 3/1281 (0%) Strand=Plus/Plus Query 9 AAGCTTCCACCCAAATCAACCATGGAAGCTAGACTCTCCGAAACTCTTGGCCTCCCATCT 68 |||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 1 AAGCTT-CACCCAAATCAGCAATGGAAGCTAGACTCTCCGAAACTCTTGGCCTCCCATCA 59 Query 69 CCAAATCTTAATCACTGCCATTTTCCCAACGAGTTCAATTCTCTCTTCACTCATTTCTCC 128 || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 60 CCGAATCTTAATCACTGCCATTTTCCCAACGATTTCAATTCCCTCTTCACTCATTTCTCC 119 Query 129 GATCTCACCTCCGTCCAAAGCCCTATCGTCAGAAACCCTAAACTCAAAACCAAATCCTCT 188 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 120 GATCTCACCTCCGTCCAAAGCCCTATCGTCAGAAACCCTAAACCCAAAACCAAATTCTCT 179 Query 189 CAAAAACCCCCAAAATTTTCAGCAAATTTCAGAAGATCCGACCCACCATTTGCATCAACA 248 ||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct 180 AAAAAATCAACAAAATTTCCAGCAAATTTCAGAAGATCCGACCCACTATTTGCATCAACA 239 Query 249 TCAATCTCGGATCCAACCCACGAAAAACCCGGACCCGAATTCCTGAAATGGATCAAACCC 308 |||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| Sbjct 240 TCAATCTCGGATCCAATCCACGCGAAACCCGGATCCGAATTCCTGAAATGGATCAAACCA 299 Query 309 GCATCACGAAGCAGTCCAAGAATTCAAACACTCATCAAACAACTCTCCGTCTGGGAACGT 368 ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 300 GCATCGCGAAGCAGTCCAAGAATTCAAACACTCATGAAACAACTCTCTGTCTGGGAACGT 359 Query 369 GCCATCATCGGTGCAGGAGCCGGTGGACTCGCCGGAGCTTTCACATACGTTACTCTTCTC 428 ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 360 GCCATCATCGGTGCAGGAGCCGGTGGACTCGCCGGAGCTTTTACATACGTTGCTCTTCTC 419 Query 429 CCACTTGACGCAATCAAAACCAAGCTTCAAACCAAAGGCGCTTCTCAGGTTTATAGTAAC 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 420 CCACTTGACGCAATCAAAACCAAGCTTCAAACCAAAGGCGCTTCTCAGGTTTATCGCAAC 479 Query 489 ACATTTGATGCTATAGTGAAAACCTTTCAAGCTAAAGGTATATTAGGTTTCTATAGTGGT 548 ||||||||||||||||| || || ||||||||||||||| | ||||||||||| |||||| Sbjct 480 ACATTTGATGCTATAGTTAAGACATTTCAAGCTAAAGGTGTTTTAGGTTTCTACAGTGGT 539 Query 549 GTCTCCGCCGTGATTGTTGGCTCTACGTTTTCCTCCGCCGTGTATTTCGGTACTTGTGAG 608 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 540 GTCTCCGCCGTGATTGTTGGCTCTACGTTTTCCTCCGCCGTGTATTTTGGTACTTGTGAG 599 Query 609 TTTGGTAAGTCTCTGCTCTCTAAGTTCCCTGATTTTCCGACGGTTTTAATCCCGCCTACT 668 |||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||| Sbjct 600 TTTGGTAAGTCTCTCCTCTCCAAATTCCCGGATTTTCCGACGGTTTTAATCCCGCCTACT 659 Query 669 GCTGGTGCTATGGGAAACATAATCTCTTCAGCTATAATGGTTCCTAAAGAGCTCATTACA 728 |||||||||||||||||||||||||| || || |||||||||||||||||||| |||||| Sbjct 660 GCTGGTGCTATGGGAAACATAATCTCGTCGGCGATAATGGTTCCTAAAGAGCTTATTACA 719 Query 729 CAGAGAATGCAAGCTGGAGCTAGTGGGAGATCTTATCAAGTTTTACTTAAGATACTTGAG 788 ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||| Sbjct 720 CAGAGAATGCAAGCTGGAGCTAGTGGGAGGTCGTATCAAGTTTTGCTTAAGATACTTGAG 779 Query 789 AAAGATGGAATCTTGGGGCTTTACGCCGGTTATTCGGCTACATTGTTGAGGAATTTACCC 848 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 780 AAAGATGGAATCTTGGGGCTTTATGCCGGTTATTCGGCTACATTGTTGAGGAATTTACCG 839 Query 849 GCTGGTGTACTCAGTTATTCGTCGTTTGAGTATCTGAAAGCCGCGGTTTTGGAGAAAACG 908 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 840 GCTGGTGTACTAAGTTATTCGTCGTTTGAGTATCTGAAAGCAGCGGTTTTGGAGAAAACG 899 Query 909 AAGCAGAGCCATCTTGAGCCTTTGCAGAGTGTTTGTTGCGGTGCGTTGGCTGGTGCGATA 968 ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 900 CAGCAGAGCCATCTGGAGCCTTTGCAGAGTGTTTGTTGTGGTGCGTTGGCTGGTGCGATA 959 Query 969 TCGGCTTCGATAACTACGCCGTTAGATGTTGTGAAGACTAGGCTGATGACACAGATTCAT 1028 || ||||||||||| || || |||||||| |||||||||||||||||||||||||||||| Sbjct 960 TCTGCTTCGATAACCACACCATTAGATGTGGTGAAGACTAGGCTGATGACACAGATTCAT 1019 Query 1029 GTGGAGGCTGTGGATAAACTCGGTGGTGCTATGTATACTGGTGTTGCTGGGACAGTGA-A 1087 |||||||| ||| ||||||| |||| |||||||||||||||||||||||| ||||||| | Sbjct 1020 GTGGAGGCAGTGAATAAACTTGGTGCTGCTATGTATACTGGTGTTGCTGGAACAGTGAGA 1079 Query 1088 GCAGATATTGACAGAGGAAGGTTGGGTTGGTTTTACCCGCGGCATGGGACCTCGAGTTGT 1147 |||||||||| ||||||||||||||||||||||||||| |||||||| || |||||||| Sbjct 1080 -CAGATATTGAAAGAGGAAGGTTGGGTTGGTTTTACCCGTGGCATGGGGCCCCGAGTTGT 1138 Query 1148 TCACAGCGCTTGTTTCTCTGCGATCGGTTATTTTGCCTTTGAGACTGCTAGGCTTACAAT 1207 |||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| Sbjct 1139 TCACAGCGCTTGTTTCTCAGCGATCGGTTATTTTGCGTTTGAGACTGCGAGGCTTACAAT 1198 Query 1208 CTTGAATGAATATTTGAAAAGGAAAGAAGAGTCTGAAGCTAACGTTGCTGCTGATTCTTG 1267 ||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 1199 CTTAAATGAATATTTGAAAAGGAAAGAAGATTCTGAAGCTACCGTTGCTGCTGATTCTTG 1258 Query 1268 AGTTCGGTTTTTGGTATAGTC 1288 |||| | |||||||||||||| Sbjct 1259 AGTTTGCTTTTTGGTATAGTC 1279 > Ahg932651 jgi|Araly1|932651|scaffold_400639.1 Length=197 Score = 52.8 bits (28), Expect = 7e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1345 CAGAACCAAGCTTGGATTCTAAGAGGTT 1372 |||||||||||||||||||||||||||| Sbjct 155 CAGAACCAAGCTTGGATTCTAAGAGGTT 182 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57706721175 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5