BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42146.1
Length=625
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494819 jgi|Araly1|494819|fgenesh2_kg.8__635__AT5G42146.1 874 0.0
Ahg949109 jgi|Araly1|949109|scaffold_800996.1 710 0.0
> Ahg494819 jgi|Araly1|494819|fgenesh2_kg.8__635__AT5G42146.1
Length=548
Score = 874 bits (473), Expect = 0.0
Identities = 524/549 (95%), Gaps = 2/549 (0%)
Strand=Plus/Plus
Query 43 agagagaCAACGAGGAAGATGGGGTGGTTTATTAAGGAAAGAAGAGGAGGTTCATGGAAG 102
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAGAGACAAAGAGGAAGATGGGTTGGTTTATTAAGGAAAGAAGAGGAGGTTCATGGAAG 60
Query 103 CGAGGATGGTTAGAGGAAACACTCCTAACATCATCAGCTCCTCCTCTTACACTACTAGCT 162
||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||
Sbjct 61 CGAGGATGGTTAGAGGAAACACTACTAACAACATCAGCACCTCCTCTTACACTACTAGCT 120
Query 163 CTCCTT-GCCATCATATCTTTACTACTCTTCCTCTCTTCATATCCGCGTTACAAGTACGA 221
|| ||| ||||||||||||||||| || |||||||||||||| ||||||||||| |||||
Sbjct 121 CT-CTTAGCCATCATATCTTTACTCCTATTCCTCTCTTCATACCCGCGTTACAAATACGA 179
Query 222 GGTTGAGAAAACCGCTGCTAATCTCAAGCTCTTCATGCTATTCCTCCCAATTCTCTTTGT 281
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGTTGAGAAAACCGCGGCTAATCTCAAGCTCTTCATGCTATTCCTCCCAATTCTCTTTGT 239
Query 282 ATTCGTCCTCGTCTCTCTAAGCTTCGTCCATCGACTTCTCTTCAAATCCTCTTACTCCGT 341
|||| ||||| | ||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 240 ATTCCTCCTCCTTTCTCTAAACTTCGTCCATCGACTTCTCTTTAAATCCTCTTACTCCGT 299
Query 342 TAGAGCAAACCAGGCTAAGTCCCTTTTTGGAGAAGGAAACTTTCCGTGGGGAGTTTTGCT 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TAGAGCAAACCAGGCTAAGTCCCTTTTTGGAGAAGGAAACTTTCCGTGGGGAGTTTTGCT 359
Query 402 TATGCTAATTCTTCTACTTCTTTTGGTTTCTAAACAATCTTACTTTCACTCCTTATGGTA 461
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TATGCTAATACTTCTACTTCTTTTGGTTTCTAAACAATCTTACTTTCACTCCTTATGGTA 419
Query 462 CCCCAATTTATGAGTTATGATCTTCCAATCATTCATATATAGTCTTCAAATGTAATATTT 521
||||| |||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 420 CCCCACCTTATGAGTTATGATCTTCCAATAATTCATATCTAGTCTTCAAATGTAATCTTT 479
Query 522 AGATTGATCATTGCTTCTTGTAATCCATAATTCCACACATGTTAAAAGACATTTTGAGAA 581
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 480 AGATTGATCATTGCTTCTTGTAATCCATAATTCCACACATGTTAAAAGACATTTTGAGTA 539
Query 582 TAATGATAA 590
|||| ||||
Sbjct 540 TAATTATAA 548
> Ahg949109 jgi|Araly1|949109|scaffold_800996.1
Length=455
Score = 710 bits (384), Expect = 0.0
Identities = 431/454 (95%), Gaps = 2/454 (0%)
Strand=Plus/Plus
Query 43 agagagaCAACGAGGAAGATGGGGTGGTTTATTAAGGAAAGAAGAGGAGGTTCATGGAAG 102
|||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 3 AGAGAGACAAAGAGGAAGATGGGTTGGTTTATTAACGAAAGAAGAGGAGGTTCATGGAAG 62
Query 103 CGAGGATGGTTAGAGGAAACACTCCTAACATCATCAGCTCCTCCTCTTACACTACTAGCT 162
||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||
Sbjct 63 CGAGGATGGTTAGAGGAAACACTACTAACAACATCAGCACCTCCTCTTACACTACTAGCT 122
Query 163 CTCCTT-GCCATCATATCTTTACTACTCTTCCTCTCTTCATATCCGCGTTACAAGTACGA 221
|| ||| ||||||||||||||||| || |||||||||||||| ||||||||||| |||||
Sbjct 123 CT-CTTAGCCATCATATCTTTACTCCTATTCCTCTCTTCATACCCGCGTTACAAATACGA 181
Query 222 GGTTGAGAAAACCGCTGCTAATCTCAAGCTCTTCATGCTATTCCTCCCAATTCTCTTTGT 281
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 GGTTGAGAAAACCGCGGCTAATCTCAAGCTCTTCATGCTATTCCTCCCAATTCTCTTTGT 241
Query 282 ATTCGTCCTCGTCTCTCTAAGCTTCGTCCATCGACTTCTCTTCAAATCCTCTTACTCCGT 341
|||| ||||| | ||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 242 ATTCCTCCTCCTTTCTCTAAACTTCGTCCATCGACTTCTCTTTAAATCCTCTTACTCCGT 301
Query 342 TAGAGCAAACCAGGCTAAGTCCCTTTTTGGAGAAGGAAACTTTCCGTGGGGAGTTTTGCT 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TAGAGCAAACCAGGCTAAGTCCCTTTTTGGAGAAGGAAACTTTCCGTGGGGAGTTTTGCT 361
Query 402 TATGCTAATTCTTCTACTTCTTTTGGTTTCTAAACAATCTTACTTTCACTCCTTATGGTA 461
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TATGCTAATACTTCTACTTCTTTTGGTTTCTAAACAATCTTACTTTCACTCCTTATGGTA 421
Query 462 CCCCAATTTATGAGTTATGATCTTCCAATCATTC 495
||| | |||||||||||||||||||||| ||||
Sbjct 422 CCCTACCTTATGAGTTATGATCTTCCAATAATTC 455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22873750200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5