BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G42190.1 Length=949 Score E Sequences producing significant alignments: (Bits) Value Ahg949102 jgi|Araly1|949102|scaffold_800989.1 817 0.0 > Ahg949102 jgi|Araly1|949102|scaffold_800989.1 Length=551 Score = 817 bits (442), Expect = 0.0 Identities = 512/545 (94%), Gaps = 8/545 (1%) Strand=Plus/Plus Query 123 AAAACC-AATGTCGACGGTGAGAAAAATCACTCTTAAGAGTTCGGATGGCGAAAACTTCG 181 |||||| ||||||||||||||||||||||||||| || || || |||||||||||||||| Sbjct 14 AAAACCAAATGTCGACGGTGAGAAAAATCACTCTAAAAAGCTCCGATGGCGAAAACTTCG 73 Query 182 AAATTGACGAAGCGGTGGCGCTAGAGTCACAAACCATCAAACATATGATTGAAGATGACT 241 ||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| Sbjct 74 AAATTGACGAAGCGGTGGCGCTAGAATCACAAACCATCAAGCATATGATTGAAGACGACT 133 Query 242 GTACCGATAATGGTATCCCTCTCCCTAATGTCACAAGCAAGATCCTTTCGAAGGTGATTG 301 || ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 134 GTGCCGATAATGGTATCCCTCTCCCTAATGTCACCAGCAAAATCCTTTCGAAGGTGATTG 193 Query 302 AGTACTGTAAGAGACATGTCGAAGCTGCTGAGAAATCCGAAACCACGGCCGATGCTGCTG 361 |||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 194 AGTACTGTAAGAAACATGTCGAAGCTGCTGCGAAATCCGAAACCACCGCCGATGCTGCTG 253 Query 362 CTGCTACTACTACCACCACCGTCGCGTCGGGTTCTAGTGATGAAGATCTCAAGACTTGGG 421 ||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 254 CTG---CTACT---ACCACCGTCGCGTCGGGTTCTAGTGACGAAGATCTTAAGACTTGGG 307 Query 422 ATTCTGAGTTTATCAAAGTTGATCAGGGCACTCTCTTCGATCTTATCCTGGCTGCTAACT 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 308 ATTCTGAGTTTATCAAAGTTGATCAGGGCACTCTCTTCGATCTTATCCTGGCTGCTAATT 367 Query 482 ACTTGAATATCAAGGGACTGTTGGACTTGACTTGCCAGACAGTGGCTGATATGATTAAAG 541 || |||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| Sbjct 368 ACCTGAATATCAAGGGACTGTTGGACTTGACCTGCCAAACAGTGGCCGATATGATTAAAG 427 Query 542 GAAAAACCCCAGAAGAAATCCGTAAGACGTTCAATATCAAGAACGACTTCACGCCAGAGG 601 | |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 428 GTAAAACCCCAGAAGAAATCCGCAAGACTTTCAATATCAAGAACGACTTCACGCCAGAGG 487 Query 602 AAGAAGAAGAGGTTCGCCGTGAGAATCAGTGGGCGTTTGAATGAAGAAAAATGAAGACCT 661 |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct 488 AAGAAGAAGAGGTTCGCCGTGAGAATCAGTGGGCATTTGAATGAATAAAAATGAAGACCT 547 Query 662 AGGTT 666 |||| Sbjct 548 -GGTT 551 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35225575308 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5