BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G42300.1 Length=610 Score E Sequences producing significant alignments: (Bits) Value Ahg949071 jgi|Araly1|949071|scaffold_800958.1 377 4e-104 > Ahg949071 jgi|Araly1|949071|scaffold_800958.1 Length=262 Score = 377 bits (204), Expect = 4e-104 Identities = 224/234 (96%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 88 GAGCGAAGAAGATGATCGAGGTGGTTCTCAACGATCGTTTAGGGAAAAAAGTTAGGGTGA 147 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 10 GAGCGAAGAAGATGATCGAGGTGGTTCTCAACGATCGACTAGGGAAAAAAGTTAGGGTTA 69 Query 148 AGTGTAACGATGATGACACGATCGGTGATCTGAAGAAGCTTGTCGCGGCACAAACCGGAA 207 |||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 70 AGTGTAACGAAGATGACACAATCGGTGATCTGAAGAAGCTTGTTGCGGCACAAACCGGAA 129 Query 208 CACGAGCCGAGAAGATCAGAATTCAGAAGTGGTACAACATCTACAAGGATCACATCACTC 267 ||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct 130 CACGAGCGGAGAAGATCCGAATTCAGAAGTGGTACAACATCTACAAGGATCATATCACTC 189 Query 268 TCAAGGACTATGAGATCCATGACGGCATGGGTCTTGAGCTTTACTACAACTAGG 321 |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 190 TCAAGGACTATGAGATTCATGACGGCATGGGTCTTGAGCTTTACTACAACTAGG 243 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22301906445 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5