BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G42540.2 Length=3458 Score E Sequences producing significant alignments: (Bits) Value Ahg949010 jgi|Araly1|949010|scaffold_800897.1 2290 0.0 > Ahg949010 jgi|Araly1|949010|scaffold_800897.1 Length=3203 Score = 2290 bits (1240), Expect = 0.0 Identities = 1416/1498 (95%), Gaps = 23/1498 (2%) Strand=Plus/Plus Query 105 TTCTTCACGATAATTTTCCGATGGGAGTTCCGTCGTTCTACAGATGGCTT-ATCCAGAGG 163 |||||||||| |||| ||||||||||||||||||||||||||||||| || ||||||||| Sbjct 1 TTCTTCACGAAAATTCTCCGATGGGAGTTCCGTCGTTCTACAGATGG-TTAATCCAGAGG 59 Query 164 TATCCATTGACTATACAAGAAGTTATTGAAGAAGAGCCACTCGAAGTTAATGGCGGCGGC 223 |||||||||| ||||||| |||| ||||||||||| ||||||||||||||| |||||| Sbjct 60 TATCCATTGATTATACAACAAGTCATTGAAGAAGAACCACTCGAAGTTAAT---GGCGGC 116 Query 224 GTCACGATTCCAATCGATTCAAGCAAACCTAATCCTAATGGTTACGAGTATGACAATCTT 283 |||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||| Sbjct 117 GTCACGATTCCAATCGATACAAGTAAACCTAATCCTAATGGTTACGAGTATGATAATCTC 176 Query 284 TATCTCGACATGAACGGAATCATTCATCCATGTTTCCATCCTGAAGACAAACCTTCTCCA 343 ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 177 TATCTCGACATGAACGGAATCATTCATCCTTGTTTCCATCCTGAAGATAAACCTTCTCCT 236 Query 344 ACTACATTTACGGAAGTGTTTCAATGTATGTTCGATTACATTGATAGGCTTTTTGTTATG 403 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 ACTACGTTTACGGAGGTGTTTCAATGTATGTTCGATTACATTGATAGGCTTTTTGTTATG 296 Query 404 GTTCGACCTCGGAAGCTCTTATTCATGGCTATTGATGGTGTTGCTCCAAGAGCTAAAATG 463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 297 GTTCGACCTCGGAAGCTCTTATTCATGGCTATTGATGGTGTTGCTCCAAGAGCTAAAATG 356 Query 464 AATCAACAGAGAGCTAGAAGGTTTAGAGCTGCTAAAGATGCAGCTGAAGCAGCAGCTGAA 523 |||||||||||||||||| | ||||||| ||| ||||||||||||||||||||||||||| Sbjct 357 AATCAACAGAGAGCTAGACGATTTAGAGTTGCAAAAGATGCAGCTGAAGCAGCAGCTGAA 416 Query 524 GAAGAGCAGCTGCGGGAAGAGTTTGAGAGAGAAGGGAAGAAGTTGCCTCCTAAAGTGGAT 583 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 417 GAAGAGCAGCTGCGGGAAGAGTTTGAGAGAGAAGGGAAGAAATTGCCTCCTAAAGTAGAT 476 Query 584 TCTCAAGTTTTTGACTCTAATGTTATTACTCCTGGAACAGAGTTCATGGCTACTCTGTCC 643 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 477 TCTCAAGTTTTTGACTCTAATGTTATAACTCCTGGAACAGAGTTCATGGCTACTCTGTCG 536 Query 644 TTTGCGTTGCGATACTACATTCACGTTAGACTAAATTCTGATCCTGGGTGGAAAAATATT 703 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 TTTGCGTTGCGATACTACATTCACGTTAGACTAAATTCTGATCCTGGGTGGAAAAATATT 596 Query 704 AAGGTTATACTCTCGGATGCTAATGTTCCTGGCGAGGGGGAACACAAGATCATGTCATAC 763 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 597 AAGGTTATACTTTCGGATGCTAATGTTCCTGGTGAGGGGGAACACAAGATCATGTCGTAC 656 Query 764 ATACGTTGTAATAAGAACCATCCTGGTTATAACCCAAACACTCATCATTGTCTATATGGT 823 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 657 ATACGTTGTAATAAGAACCATCCTGGTTATAACCCAAACACTCATCATTGCCTATATGGT 716 Query 824 TTGGACGCCGATTTGATCATGCTGTCTTTGGCCACCCACGAAATTCATTTTTCAATCCTT 883 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 TTGGACGCCGATTTGATCATGCTGTCTTTGGCCACCCACGAAATTCATTTTTCAATCCTT 776 Query 884 CGTGAGGTTGTTTTCTTTCCTGGAGAGGAAGGCAAATGCTTCTTGTGTGGTCAAGAGGGG 943 ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||| Sbjct 777 CGTGAGGTTGTTTTCTTTCCTGGAGAGAAAGACAAATGCTTCTTGTGTGGTCAAGTTGGG 836 Query 944 CACCGAGCAGCAGATTGTGAGGGAAAGATAAAGAGGAAGACAGGAGAAATGCTTGATAAT 1003 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 837 CACCGAGCAGCAGATTGTGAGGGAAAGATAAAGAGGAAGGCAGGAGAAATGCTTGATGAT 896 Query 1004 ACTGAGGCAGATGTTGTGGTGAAGAAGCCATATGAGTTTGTCAATATATGGATACTACGA 1063 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 897 ACTGAGGCAGATGTTGTGGTGAAGAAGCCATACGAGTTTGTCAATATATGGATACTTCGA 956 Query 1064 GAGTATTTGGAACACGACATGCAGATTCCTGG--AGC-a---aaaaaaaaTTTGGACCGC 1117 |||||||||||||||||||||||||||||| ||| | |||||||||||||||||| Sbjct 957 GAGTATTTGGAACACGACATGCAGATTCCTAACCAGCGATCGAAAAAAAATTTGGACCGC 1016 Query 1118 TTAATTGATGACTTCATCTTCATCTGTTTTTTCGTTGGGAATGATTTCCTGCCACATATG 1177 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1017 TTAATTGATGACTTCATCTTCATTTGTTTTTTCGTTGGGAATGATTTCCTGCCACATATG 1076 Query 1178 CCTACGCTCGAGATACGGGAGGGTGCTATAGAACTGCTGATGTCTGTGTACAAGAATAAG 1237 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1077 CCTACGCTAGAGATACGGGAGGGTGCTATAGAACTGCTGATGTCTGTGTACAAGAATAAA 1136 Query 1238 TTTAGATCAGCaaaaaaaTACTTAACCGATTCAAGCAAGCTGAACTTAAGAAATGTTGAG 1297 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1137 TTTAGATCAGCAAAAAAATACTTGACCGATTCAAGCAAGCTGAACTTAAGAAATGTGGAG 1196 Query 1298 CGTTTCATCAAGGCCGTTGGGATGTATGAAAATCAAATATTTCAGAAGAGAGCACAAGTA 1357 |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1197 CGTTTCATCAAGGCCGTTGGGACCTATGAAAATCAGATATTTCAGAAGAGAGCACAAGTA 1256 Query 1358 CAGCAGAGGCAATCAGAAAGGTTTCGTCGTGACAAAGCTCGTGACAAAGCTCGTGACAAT 1417 || |||||||||||| ||||||| |||||||||||||||||| ||||||||||||| | Sbjct 1257 CAAAAGAGGCAATCAGGAAGGTTTATTCGTGACAAAGCTCGTGAAAAAGCTCGTGACAGT 1316 Query 1418 GCTCGTGACAATGCTCAAGCAAGCAGACAATTCTCTGGCAAGTTGGTGCAATTAGATTCT 1477 | | | ||| || ||||| | | | |||||||||||||||||||||||||||||||| Sbjct 1317 G-T--T--CAA-GC--AAGCA-G-A-A-AATTCTCTGGCAAGTTGGTGCAATTAGATTCT 1364 Query 1478 CTAGATGAAGTGTCTGATTCATTGCATTCATCACCTTCACGAAAATATTTGCGTCTGTCT 1537 ||||||||||||||||||||||||||||| |||||| |||||||| |||||||| ||||| Sbjct 1365 CTAGATGAAGTGTCTGATTCATTGCATTCCTCACCTCCACGAAAACATTTGCGTTTGTCT 1424 Query 1538 TTGGATGATAACATTGGTGTGGCGAATGTTGAAACAGAAAATAGCCTCAAAGCAGAAG 1595 |||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 1425 TTGGATAATAACATTGGTGTGGCGAATGTTGAAACAGAAAATAGCTTCAAAGCTGAAG 1482 Score = 1118 bits (605), Expect = 0.0 Identities = 760/834 (91%), Gaps = 14/834 (2%) Strand=Plus/Plus Query 2372 GATGGGATGAATGGTTACATAGCTTCATGTGGTGGAGATAGTCAGCCTTCATGTTTCTGC 2431 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 2364 GATGGGATGAATGGTTACATAGCTTCATGTGGTGGAGATAGTCAGCCTCCATGTTTCAGC 2423 Query 2432 TCCACAGTCGAGGGTATGGAAGATGTTTTAACCAATCAAGTCATTTGTGCCATATACAAA 2491 ||| |||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 2424 TCCCCAGTCGAGGGCATGGAAGATGTTTTAGCCAATCATGTCATTTGTGCCATATACAAA 2483 Query 2492 CTTCCAGAAGATATCAGAGGCAGTGAGATTACTCATCAGATTCCAAGATTGGCAATCCCT 2551 |||||||| |||||||||||||| |||||||||||||| ||||||| |||| ||||||| Sbjct 2484 CTTCCAGATGATATCAGAGGCAGCGAGATTACTCATCAAATTCCAACATTGAAAATCCCT 2543 Query 2552 AAAAAGACTATATC-TCTAGTGGATTTGAAATCTGGAGGTCTTCTATGGCATGAAGATGG 2610 ||| |||||||| | |||||||||||||||| ||| ||||||||| |||||||||||||| Sbjct 2544 AAACAGACTATA-CATCTAGTGGATTTGAAAGCTGAAGGTCTTCTCTGGCATGAAGATGG 2602 Query 2611 GGACAAAAGAAGAGCTCCTCCAAAGGTTATAAAAATCAAGAGGTATAATCCAGAAGGATC 2670 |||| |||| |||||||| |||| |||| ||||||||||||||||||||| |||||||| Sbjct 2603 TGACAGAAGACGAGCTCCTGCAAAAGTTAAAAAAATCAAGAGGTATAATCCCGAAGGATC 2662 Query 2671 TATTTCTGGGGGTAGGCTTGGGAAGGCATCTCATAGACTTGTGTTGCAAACAATAAATGC 2730 |||||||||| |||||||||||||||| | || || ||||||||||||||||||||||| Sbjct 2663 TATTTCTGGGAATAGGCTTGGGAAGGCAGCACACAGGCTTGTGTTGCAAACAATAAATGC 2722 Query 2731 CCAACCTGATTA-TATGAACATCAACTCGGAACCAGCGTTGTGTCCAAATACTGTTTTCC 2789 |||||||||| | || | |||||||||||||||||||||||||||||||||||||||||| Sbjct 2723 CCAACCTGAT-AGTACGCACATCAACTCGGAACCAGCGTTGTGTCCAAATACTGTTTTCC 2781 Query 2790 AGAACGAACGAGTGCCGAAAAAGA-TCCCTA-CATTTAAAGATAATGGGATACAATGGAT 2847 ||||| ||||||||||||||| || |||| | ||||| ||| ||||||||||||||||| Sbjct 2782 AGAACCAACGAGTGCCGAAAA-GAATCCC-AGCATTTCGAGAAAATGGGATACAATGGAT 2839 Query 2848 AAGCCCTCCTCCGAGTCAAATCACTCCGAAGAAGATGAATAGCCCTCAAAGGCAAAAGGC 2907 ||||||||| || |||||||||||||||||||||||| |||||| |||| |||||| | Sbjct 2840 AAGCCCTCC---GACTCAAATCACTCCGAAGAAGATGAAAAGCCCTGAAAGTCAAAAGAC 2896 Query 2908 TTGGAAGAAGGATGAAACCCCTCAGAGTCGAGAGAAATCGAAGAAGCTGAAAAGCTCTCT 2967 | |||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2897 TAGGAAGAAGAATGATACCCCTCAGAGTCGAGACAAATCGAAGAAGCTGAAAAGCTCTCT 2956 Query 2968 GAAAGTAAACCCTTTGAAGATGAAGAAAACTAAAAGCCCTCAGAGAGAGTTCACTCGAGA 3027 |||||||| |||||||||||||||||||||||||| |||||||||||| |||||||| | Sbjct 2957 GAAAGTAATCCCTTTGAAGATGAAGAAAACTAAAAACCCTCAGAGAGATTTCACTCGGGG 3016 Query 3028 GAAGAAGAAGGAAAACATAACCCCTCAAAGGAAACTCACTAAGGCACAGAGGCAGGTGAA 3087 ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||| Sbjct 3017 GAAGAAGAAGGAAAACATAACCCCTCAAAGGAAACCCACTAAGGCGGAGAGGCAGGCGAA 3076 Query 3088 ACACATACGCATGATGGAAGAGGCGAAAATGATAAAACAGAGGAAAAAAGAGAAGTATTT 3147 |||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||| Sbjct 3077 ACACATTCGCATGATGGAAGAGGCGAAAAGGATAAAAGAGAGGAAAAAAGAGAAGTATTT 3136 Query 3148 AAGAAAGAAAGCCAAATATGCACAAGGAGCTCCTCCCAAAACAGCTTGAGCTTC 3201 ||||||||||||||||||||||||| || |||||| |||||||||||||| Sbjct 3137 AAGAAAGAAAGCCAAATATGCACAAA-AGGA--TCCCAACACAGCTTGAGCTTC 3187 Score = 1112 bits (602), Expect = 0.0 Identities = 700/748 (94%), Gaps = 4/748 (1%) Strand=Plus/Plus Query 1595 GAACTAGATAACGAAGAAGACTTAAAGTTTAAGCTTAAGAAACTACTGCGGGATAAAGGT 1654 ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| | Sbjct 1620 GAACTAGATAACGGAGAAGACTTAAAGTTTAAGCTTAAGAAACTGCTGCGGGATAAATCT 1679 Query 1655 GATGGGTTCAGGTCAGGAAATGGAGAACAAGATAAGGTTAAGCTAAAT-AAAGTAGGATG 1713 |||| ||| || |||||||| |||||||||||||||||||||||| | || |||||| Sbjct 1680 GATGTGTTAAGCTCAGGAAAGGGAGAACAAGATAAGGTTAAGCTAGGTGCAA-CAGGATG 1738 Query 1714 GAGAGAGAGATATTACGAAGAGAAATTCGCAGCTAAGTCTGTGGAGGAAATGGAACAAAT 1773 ||| || ||||| || |||||||||||| |||||||||||| ||||||||||||| ||| Sbjct 1739 GAGGGAAAGATACTATGAAGAGAAATTCACAGCTAAGTCTGCCGAGGAAATGGAACTAAT 1798 Query 1774 ACGCAGAGATGTTGTTTTGAAGTACACAGAAGGTCTTTGTTGGATAATGCATTATTATTA 1833 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 1799 ACGCAGAGATGTTGTTTTGAAGTATACCGAAGGTCTTTGTTGGATAATGCATTATTATTA 1858 Query 1834 TCATGGTGTTTGTTCCTGGAACTGGTTTTATCCATATCATTACGCACCTTTCGCATCAGA 1893 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1859 TCATGGTGTTTGTTCCTGGAACTGGTTTTATCCATATCATTACGCACCTTTCGCATCAGA 1918 Query 1894 TCTCAAGGGCCTTGAGAAACTAGATATTAAGTTTGAACTAGGTTCCCCGTTTAAACCATT 1953 ||||||||||||||| | |||||||||||||||||||||||||||||||||||||| || Sbjct 1919 TCTCAAGGGCCTTGATAGCCTAGATATTAAGTTTGAACTAGGTTCCCCGTTTAAACC-TT 1977 Query 1954 T-AATCAGCTTCTGGCTGTTCTTCCATCTGCAAGTGCACATGCTCTCCCAGAGTGCTATA 2012 | ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1978 TCAATCAACTTCTGGCTGTTCTTCCATCTGCAAGTGCACATGCTCTCCCGGAGTGCTATA 2037 Query 2013 GGTCATTGATGACAAATCCAGATTCGCCTATAGCTGACTTTTATCCTGCTGATTTTGAGA 2072 || ||||||||||| |||||| ||||||||||||||| |||||| ||||||||||||||| Sbjct 2038 GGACATTGATGACAGATCCAGCTTCGCCTATAGCTGATTTTTATGCTGCTGATTTTGAGA 2097 Query 2073 TTGACATGAATGGAAAACGCTACTCTTGGCAGGGTATATCGAAACTGCCTTTTGTTGAAG 2132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2098 TTGACATGAATGGAAAACGCTACTCTTGGCAGGGTATATCGAAACTGCCTTTTGTTGACG 2157 Query 2133 AAAAGCGTCTTCTGGAGGCAGCTGCGCAAGTGGAGAAATCACTGACGAACGAAGAAATTC 2192 ||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 2158 AAAGGCGTCTTCTGGAGGCAGCTGCACTAGTGGAGAAATCACTGACGAACGAAGAAATTC 2217 Query 2193 GAAGAAACAGTGCGTTGTTTGACATGCTCTTTGTGGTTGCTTCTCATCCCCTTGGTGAAC 2252 |||||||||||| ||||||||||||||| ||||| ||||| ||||||||||||| ||||| Sbjct 2218 GAAGAAACAGTGTGTTGTTTGACATGCTGTTTGTTGTTGCATCTCATCCCCTTGCTGAAC 2277 Query 2253 TCATCCGTTCTCTTAATAGCCGTACCAACAACTTGAGCAATGAAGAACGTGCAACTATCA 2312 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2278 TCATCCGTTCTCTTAATAGCCGTACCAACAACTTGAGCAATGAAGAACGAGCAACTATCA 2337 Query 2313 TTGAAAAAATTGACCCTGGACTAAGTGA 2340 | || ||||||||||||||||||||||| Sbjct 2338 TCGAGAAAATTGACCCTGGACTAAGTGA 2365 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 130575532963 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5