BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42570.1
Length=892
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494776 jgi|Araly1|494776|fgenesh2_kg.8__592__AT5G42570.1 1157 0.0
> Ahg494776 jgi|Araly1|494776|fgenesh2_kg.8__592__AT5G42570.1
Length=863
Score = 1157 bits (626), Expect = 0.0
Identities = 789/865 (91%), Gaps = 21/865 (2%)
Strand=Plus/Plus
Query 1 ATTGACCGACACAACAA-ACAACACGTTCTCTCTCATTTTTCTTCTTCTCCG---ATCAA 56
||||||||||||||||| || |||||||||||| |||||||||||||||| |||||
Sbjct 1 ATTGACCGACACAACAACACGTTACGTTCTCTCTCCTTTTTCTTCTTCTCCGATCATCAA 60
Query 57 TCTAGGGTTTACTCTCACCGGCGACGAACAATGATCCACCTCCTTTACACAGTGATCTTC 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTAGGGTTTACTCTCACCGGCGACGAACAATGATCCACCTCCTTTACACAGTGATCTTC 120
Query 117 GCCGAAATGGCACTGATCCTTCTCCTCCTCTTCAAAACTCCTCTCCGAAAGCTAATCATC 176
||||||||||| | ||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 121 GCCGAAATGGCGTTAATCCTCCTTCTCCTCTTCAAAACACCTCTCCGAAAGCTAATCATC 180
Query 177 CTCACCTTCGATCGAATCAAACGTGGCCGTGGTCCCGTCGTCGTCAAAACCATAGGAACC 236
|| || |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 181 CTAACGTTCGATCGAATCAAACGTGGCCGTGGTCCCGTCGTCGTGAAAACCATCGGAATT 240
Query 237 ACCGTATTCGTCGTTCTCTTGTCGAGTATCTACAGTTTGGTTAATATCCAACGCCGATCT 296
||||| ||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 ACCGTGTTCATCGTTCTGTTGTCGAGTATCTACAGTTTGGTCAATATCCAACGCCGATCT 300
Query 297 GAAGATGGTGCTGTTCTTAATCCCACTGATCAAGTCCTTGCGTCTAAGCATCTTCTCGAA 356
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct 301 GAAGATGGTGCTGTTCTTAATCCTACTGATCAAGTTCTTGCCTCTAAGCATCTCCTCGAA 360
Query 357 GCTTCTCTTATGGGGTTTGTGTTGTTTCTCTCGCTTATGATTGATAGACTACACCATTAC 416
|||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 361 GCTTCTCTTATGGGATTTGTGTTGTTTCTCTCGCTTATGATTGATCGGCTACACCATTAC 420
Query 417 ATTAGAGAGCTTCGTTTGTTGAGGAAGACAATGGAGACTGCAAAGAAGCAGAACAGAGGT 476
|| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 ATCAGAGAGCTTCGGTTGTTGAGGAAGACAATGGAGACTGCGAAGAAGCAGAACAGAGGT 480
Query 477 TTTGAGGATGGGAAAACCACAAGTGGGGAGGAAGTGAAAGCGCTCGGGGAAGAGATCGCG 536
||||||||||| |||| |||||||||||||||||||||||| | |||||||| ||||||
Sbjct 481 TTTGAGGATGGAAAAAACACAAGTGGGGAGGAAGTGAAAGCAATTGGGGAAGAAATCGCG 540
Query 537 GCGTTAAAAGCGAAGATAAAGACGTTAGAATCGGAGAGTGAAAGTAAAGGCAAAGAATTG 596
|||||||| |||||||||||||| || ||||||||||||||||| |||||||||||| |
Sbjct 541 GCGTTAAAGGCGAAGATAAAGACATTGGAATCGGAGAGTGAAAGCAAAGGCAAAGAACTA 600
Query 597 AAAGGTGCACAAGGTGAAACAGAGGCTTTGAGAAAGCAAGCTGATGGGTTTCTTATGGAG 656
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 601 AAAGGGGCACAAGGTGAAACAGAGGCTCTGAGAAAGCAAGCTGATGGGTTTCTTATGGAG 660
Query 657 TATGATAGG-TTGCTTGAGGATAATCAGAATTTGAGGAACCAGTTGGAGTCTATTGGGCA 715
||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 661 TATGATAGGCTT-CTTGAGGATAATCAGAATTTGAGGAACCAGTTGGAGTCTGTTGGCCA 719
Query 716 TAGTCCTGAGGGAAAGAAGGGTATGTAA----GAGTAAA-AA--------CTAAGGATTC 762
||||||||||||||||||||||||||| ||| ||| || ||||||||||
Sbjct 720 CAGTCCTGAGGGAAAGAAGGGTATGTAAAATTGAGCAAAGAAAAAGAAAACTAAGGATTC 779
Query 763 TGTTTTGTAGAGAACAAAGTAACTATAGGAAATGTGGTTTTACTGATTTTTGCTTCATGT 822
|||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||||
Sbjct 780 TGTTTTGTAGAGAACAAAGTAACTTTAGGAAATGTGGCTTTGCTGATTTTTGCTTTATGT 839
Query 823 AATATGC-AATATCGTCTCCTCTTT 846
| ||||| || | |||||| |||||
Sbjct 840 ATTATGCTAAAA-CGTCTCATCTTT 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33052569039
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5