BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42650.1
Length=1801
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494777 jgi|Araly1|494777|fgenesh2_kg.8__593__AT5G42650.1 2495 0.0
Ahg916065 jgi|Araly1|916065|Al_scaffold_0008_816 1474 0.0
> Ahg494777 jgi|Araly1|494777|fgenesh2_kg.8__593__AT5G42650.1
Length=1602
Score = 2495 bits (1351), Expect = 0.0
Identities = 1523/1606 (95%), Gaps = 11/1606 (1%)
Strand=Plus/Plus
Query 18 TCGCCACTGTTTCGAATAGATGGCTTCTATTTCAACCCCTTTTCCGATTTCTCTCCACCC 77
|||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1 TCGCCACTGTTTCGAAGAGATGGCTTCTGTTTCAACGCCTTTTCCGATTTCTCTCCACCC 60
Query 78 AAAAACCGTACGATCAAAGCCGTTGAAATTCCGAGTTTTGACCCGTCCGATCAAAGCTTC 137
||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 AAAGATCGTACGATCAAAGCCGTTGAAATTTCGAGTTTTGACCCGTCCGATCAAAGCTTC 120
Query 138 CGGGTCAG-AA-A-CTCCTGATCTAACCGTAGCGACACGAACCGGATCCAAAGATCTCCC 194
|||||||| || | ||||||||||| ||||||||||||||||||| || |||||||| ||
Sbjct 121 CGGGTCAGAAACACCTCCTGATCTAGCCGTAGCGACACGAACCGGGTCAAAAGATCTTCC 180
Query 195 GATCCGAAACATACCGGGAAACTACGGTTTACCAATCGTAGGACCAATCAAAGACCGTTG 254
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 GATCCGGAACATACCGGGAAACTACGGTTTACCAATCGTTGGACCAATCAAAGACCGTTG 240
Query 255 GGATTACTTTTACGACCAAGGAGCTGAAGAGTTCTTCAAATCACGAATCCGTAAATACAA 314
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 GGATTACTTTTACGACCAAGGAGCTGAAGAGTTCTTCAAATCAAGAATCCGTAAATACAA 300
Query 315 CTCCACGGTGTACAGAGTCAACATGCCACCGGGAGCTTTTATCGCCGAGAATCCACAAGT 374
|| || |||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 TTCAACCGTGTACCGAGTCAACATGCCACCGGGAGGTTTTATCGCCGAGAATCCACAAGT 360
Query 375 CGTGGCTTTACTCGACGGTAAAAGCTTCCCGGTTTTATTCGATGTCGATAAAGTCGAAAA 434
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGTGGCTTTACTCGACGGTAAAAGCTTCCCGGTTTTATTCGATGTCGATAAAGTCGAAAA 420
Query 435 GAAAGATCTTTTCACCGGTACTTACATGCCGTCAACGGAACTAACCGGAGGCTACCGTAT 494
||||||||| |||||||||||||||||||| ||||| || || || || || ||||||||
Sbjct 421 GAAAGATCTCTTCACCGGTACTTACATGCCTTCAACAGACCTCACTGGCGGTTACCGTAT 480
Query 495 CCTCTCGTACCTCGATCCATCGGAGCCTAAACACGAAAAGCTCAAA-AATCTCCTTTTCT 553
|||||| ||||||||||| || |||||||||||||||||||| ||| || | |||||||
Sbjct 481 CCTCTCTTACCTCGATCCGTCCGAGCCTAAACACGAAAAGCTTAAATCAT-TACTTTTCT 539
Query 554 TCCTCCTCAAGTCATCTCGAAACCGGATCTTCCCTGAGTTTCAAGCTACTTACTCCGAGC 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCCTCCTCAAGTCATCTCGAAACCGGATCTTCCCTGAGTTTCAAGCTACTTACTCCGAGC 599
Query 614 T-TTTCGATTCTTTGGAGAAAGAGCTTTCCCTTAAAGGGAAAGCGGATTTCGGCGGTTCC 672
| ||| |||||||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 600 TCTTT-GATTCTTTAGAGAAAGAGCTTTCCCTTAAAGGAAAAGCCGATTTCGGCGGTTCC 658
Query 673 AGCGACGGAACCGCCTTTAATTTCTTGGCTCGAGCTTTCTACGGGACGAATCCCGCAGAT 732
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 659 AGTGACGGAACCGCCTTTAATTTTTTGGCTCGAGCTTTCTACGGGACGAATCCCGTAGAT 718
Query 733 ACAAAGCTCAAAGCCGACGCTCCGGGTTTGATCACTAAATGGGTTTTATTCAATCTCCAT 792
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 719 ACAAAGCTCAAAGCCGACGCGCCCGGTTTGATCACTAAATGGGTTTTATTCAATCTCCAT 778
Query 793 CCATTACTCTCTATTGGTTTACCGA-GAGTTATAGAAGAACCTCTCATCCATACATTTAG 851
|| ||||||||| |||||||||||| || |||||||||| |||||| |||||||||||||
Sbjct 779 CCGTTACTCTCTCTTGGTTTACCGAGGA-TTATAGAAGATCCTCTCCTCCATACATTTAG 837
Query 852 TCTACCACCGGCGTTAGTCAAATCTGATTACCAGAGACTCTACGAGTTTTTCTTAGAATC 911
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 838 TCTACCACCGGCGTTAGTCAAATCTGATTACCAGAGACTCTACGAGTTTTTCTTCGAATC 897
Query 912 CGCCGGTGAGATTCTCGTTGAAGCCGATAAATTGGGTATCTCACGAGAAGAAGCTACTCA 971
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 898 CGCCGGTGAAATTCTCGTTGAAGCCGATAAATTGGGTATCTCACGAGAAGAAGCGACTCA 957
Query 972 CAATCTTCTCTTCGCCACGTGCTTCAACACGTGGGGTGGGATGAAGAT-TTTGTTTCCGA 1030
|||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 958 CAATCTTCTCTTCGCCACGTGCTTCAACACGTGGGGTGGGATGAAGATCCTT-TTCCCGA 1016
Query 1031 ATATGGTTAAACGTATCGGGCGGGCGGGTCATCAAGTTCATAACCGATTAGCGGAGGAGA 1090
||||||||||||| |||||||||||||||||| |||| ||||||| ||||||||||||||
Sbjct 1017 ATATGGTTAAACGGATCGGGCGGGCGGGTCATAAAGTCCATAACCAATTAGCGGAGGAGA 1076
Query 1091 TTAGATCTGTGATTAAATCCAACGGCGGAGAACTCACGATGGGAGCGATTGAGAAAATGG 1150
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1077 TTAGATCTGTGATTAAATCCAACGGTGGAGAACTCACGATGGGAGGGATTGAGAAAATGG 1136
Query 1151 AGTTAACCAAATCAGTGGTTTACGAATGTCTCCGGTTTGAACCACCGGTTACGGCTCAAT 1210
|| |||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1137 AGCTAACCAAATCTGTGGTTTACGAATGTCTCCGGTTTGAACCACCGGTTCCGGCGCAAT 1196
Query 1211 ACGGTAGAGCGAAGAAGGATCTGGTTATCGAAAGCCACGACGCGGCGTTTAAAGTCAAAG 1270
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 ACGGTAGAGCGAAGAAAGATCTGGTTATCGAAAGCCACGACGCGGCGTTTAAAGTCAAAG 1256
Query 1271 CCGGTGAAATGCTTTACGGTTATCAACCGTTGGCGACGAGAGATCCGAAGATTTTTGATC 1330
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 CCGGTGAAATGCTTTATGGTTATCAACCGTTGGCGACGAGAGATCCGAAGATTTTTGATC 1316
Query 1331 GGGCGGATGAGTTTGTGCCGGAGAGATTCGTCGGAGAAGAAGGAGAGAAGCTTTTGAGGC 1390
| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1317 GAGCGGATGAGTTTGTACCGGAGAGATTCGTCGGAGAAGAAGGAGAGAAGCTGTTGCGGC 1376
Query 1391 ATGTGTTGTGGTCGAATGGACCGGAGACGGAGACTCCGACGGTGGGGAATAAACAATGCG 1450
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 ATATATTGTGGTCGAATGGACCGGAGACGGAGACTCCGACGGTGGGGAATAAACAATGCG 1436
Query 1451 CCGGTAAGGATTTTGTTGTTTTGGTGGCGAGGTTGTTTGTGATTGAGATTTTCCGGCGAT 1510
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 CCGGTAAGGATTTCGTTGTTTTGGTGGCGAGGTTGTTTGTGATTGAGATTTTCCGGCGAT 1496
Query 1511 ATGATTCGTTTGATATTGAGGTTGGTACGTCGCCGTTAGGAAGCTCCGTTAATTTCTCGT 1570
|||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||
Sbjct 1497 ATGATTCGTTTGATATTGAGGTTGCTAAGTCGCCGTTAGGAAGCTCCGTTAATTTCACGT 1556
Query 1571 CGTTAAGGAAAGCTAGCTTTTAGGAGCCAAGGGTAAATTTGTAATT 1616
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 CGTTAAGGAAAGCTAGCTTTTAGGAGCCAAGGGTAAATTTGTAATT 1602
> Ahg916065 jgi|Araly1|916065|Al_scaffold_0008_816
Length=1398
Score = 1474 bits (798), Expect = 0.0
Identities = 881/921 (96%), Gaps = 6/921 (1%)
Strand=Plus/Plus
Query 676 GACGGAACCGCCTTTAATTTCTTGGCTCGAGCTTTCTACGGGACGAATCCCGCAGATACA 735
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 GACGGAACCGCCTGTAATTTCTTGGCTCGAGCTTTCTACGGGACGAATCCCGTAGATACA 540
Query 736 AAGCTCAAAGCCGACGCTCCGGGTTTGATCACTAAATGGGTTTTATTCAATCTCCATCCA 795
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 541 AAGCTCAAAGCCGACGCGCCCGGTTTGATCACTAAATGGGTTTTATTCAATCTCCATCCG 600
Query 796 TTACTCTCTATTGGTTTACCGAGAGTTATAGAAGAACCTCTCATCCATACATTTAGTCTA 855
||||||||| | |||||||| ||| || ||||||| |||||| |||||||||||||||||
Sbjct 601 TTACTCTCTCTCGGTTTACCAAGAATTGTAGAAGATCCTCTCCTCCATACATTTAGTCTA 660
Query 856 CCACCGGCGTTAGTCAAATCTGATTACCAGAGACTCTACGAGTTTTTCTTA-GAATCCGC 914
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 661 CCACCGGCGTTAGTCAAATCTGATTACCAGAGACTCTACGAGTTTTTC-TACGAATCCGC 719
Query 915 CGGTGAGATTCTCGTTGAAGCCGATAAATTGGGTATCTCACGAGAAGAAGCTACTCACAA 974
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 CGGTGAAATTCTCGTTGAAGCCGATAAATTGGGTATCTCACGAGAAGAAGCGACTCACAA 779
Query 975 TCTTCTCTTCGCCACGTGCTTCAACACGTGGGGTGGGATGAAGAT-TTTGTTTCCGAATA 1033
||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 780 TCTTCTCTTCGCCACGTGCTTCAACACGTGGGGTGGGATGAAGATCCTT-TTCCCGAATA 838
Query 1034 TGGTTAAACGTATCGGGCGGGCGGGTCATCAAGTTCATAA-CCGATTAGCGGAGGAGATT 1092
|||||||||| |||||||||||||||||| |||| ||||| | | |||||||||||||||
Sbjct 839 TGGTTAAACGGATCGGGCGGGCGGGTCATAAAGTCCATAATCAG-TTAGCGGAGGAGATT 897
Query 1093 AGATCTGTGATTAAATCCAACGGCGGAGAACTCACGATGGGAGCGATTGAGAAAATGGAG 1152
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 898 AGATCTGTGATTAAATCCAACGGTGGAGAACTCACGATGGGAGGGATTGAGAAAATGGAG 957
Query 1153 TTAACCAAATCAGTGGTTTACGAATGTCTCCGGTTTGAACCACCGGTTACGGCTCAATAC 1212
||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 958 TTAACCAAATCTGTGGTTTACGAATGTCTCCGGTTTGAACCACCGGTTCCGGCGCAATAC 1017
Query 1213 GGTAGAGCGAAGAAGGATCTGGTTATCGAAAGCCACGACGCGGCGTTTAAAGTCAAAGCC 1272
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GGTAGAGCGAAGAAAGATCTGGTTATCGAAAGCCACGACGCGGCGTTTAAAGTCAAAGCC 1077
Query 1273 GGTGAAATGCTTTACGGTTATCAACCGTTGGCGACGAGAGATCCGAAGATTTTTGATCGG 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1078 GGTGAAATGCTTTACGGTTATCAACCGTTGGCGACGAGAGATCCGAAGATTTTTGATAGA 1137
Query 1333 GCGGATGAGTTTGTGCCGGAGAGATTCGTCGGAGAAGAAGGAGAGAAGCTTTTGAGGCAT 1392
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1138 GCGGATGAGTTTGTGCCGGAGAGATTCGTCGGAGAAGAAGGAGAGAAGCTGTTGCGGCAT 1197
Query 1393 GTGTTGTGGTCGAATGGACCGGAGACGGAGACTCCGACGGTGGGGAATAAACAATGCGCC 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GTGTTGTGGTCGAATGGACCGGAGACGGAGACTCCGACGGTGGGGAATAAACAATGCGCC 1257
Query 1453 GGTAAGGATTTTGTTGTTTTGGTGGCGAGGTTGTTTGTGATTGAGATTTTCCGGCGATAT 1512
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GGTAAGGATTTCGTTGTTTTGGTGGCGAGGTTGTTTGTGATTGAGATTTTCCGGCGATAT 1317
Query 1513 GATTCGTTTGATATTGAGGTTGGTACGTCGCCGTTAGGAAGCTCCGTTAATTTCTCGTCG 1572
|||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||
Sbjct 1318 GATTCGTTTGATATTGAGGTTGCTAAGTCGCCGTTAGGAAGCTCCGTTAATTTCACGTCG 1377
Query 1573 TTAAGGAAAGCTAGCTTTTAG 1593
|||||||||||||||||||||
Sbjct 1378 TTAAGGAAAGCTAGCTTTTAG 1398
Score = 726 bits (393), Expect = 0.0
Identities = 451/479 (94%), Gaps = 3/479 (1%)
Strand=Plus/Plus
Query 37 ATGGCTTCTATTTCAACCCCTTTTCCGATTTCTCTCCACCCAAAAACCGTACGATCAAAG 96
||||||||| ||||||| |||||||||||||||||||||||||| | |||||||||||||
Sbjct 1 ATGGCTTCTGTTTCAACTCCTTTTCCGATTTCTCTCCACCCAAAGATCGTACGATCAAAG 60
Query 97 CCGTTGAAATTCCGAGTTTTGACCCGTCCGATCAAAGCTTCCGGGTCAG-AA-A-CTCCT 153
||||||||||| ||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 61 CCGTTGAAATTTCGAGTTTTGACCCGTCCGATCAAAGCTTCCGGGTCAGAAACACCTCCT 120
Query 154 GATCTAACCGTAGCGACACGAACCGGATCCAAAGATCTCCCGATCCGAAACATACCGGGA 213
|||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 121 GATCTAGCCGTAGCGACACGAACCGGATCTAAAGATCTCCCGATCCGGAACATACCGGGA 180
Query 214 AACTACGGTTTACCAATCGTAGGACCAATCAAAGACCGTTGGGATTACTTTTACGACCAA 273
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 AACTACGGTTTACCAATCGTTGGACCAATCAAAGACCGTTGGGATTACTTTTACGACCAA 240
Query 274 GGAGCTGAAGAGTTCTTCAAATCACGAATCCGTAAATACAACTCCACGGTGTACAGAGTC 333
|||||||||||||||||||||||| |||||||||||||||| || || |||||| |||||
Sbjct 241 GGAGCTGAAGAGTTCTTCAAATCAAGAATCCGTAAATACAATTCAACCGTGTACCGAGTC 300
Query 334 AACATGCCACCGGGAGCTTTTATCGCCGAGAATCCACAAGTCGTGGCTTTACTCGACGGT 393
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 AACATGCCACCGGGAGGTTTTATCGCCGAGAATCCACAAGTTGTGGCTTTACTCGACGGT 360
Query 394 AAAAGCTTCCCGGTTTTATTCGATGTCGATAAAGTCGAAAAGAAAGATCTTTTCACCGGT 453
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 AAAAGCTTCCCGGTTTTATTCGATGTCGATAAAGTCGAAAAGAAAGATCTCTTCACCGGT 420
Query 454 ACTTACATGCCGTCAACGGAACTAACCGGAGGCTACCGTATCCTCTCGTACCTCGATCC 512
||||||||||| ||||| || || || || || |||||||||||||| |||||||||||
Sbjct 421 ACTTACATGCCTTCAACAGACCTCACTGGCGGTTACCGTATCCTCTCTTACCTCGATCC 479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67610184875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5