BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G42670.1 Length=1202 Score E Sequences producing significant alignments: (Bits) Value Ahg916060 jgi|Araly1|916060|Al_scaffold_0008_811 1014 0.0 > Ahg916060 jgi|Araly1|916060|Al_scaffold_0008_811 Length=825 Score = 1014 bits (549), Expect = 0.0 Identities = 740/830 (89%), Gaps = 22/830 (3%) Strand=Plus/Plus Query 73 ATGAGTGAAATGAATCTACCATTTGAAGTTGGTCAAACTGTAGAATTGAA-ATCTTTTGA 131 |||| | |||| ||||||||||||||||||||||||||||||||||| || ||||||| | Sbjct 1 ATGACTCAAATCAATCTACCATTTGAAGTTGGTCAAACTGTAGAATT-AAGATCTTTT-A 58 Query 132 -ATTGGGTTTTCGTGGTGCTTGGTTTCGTTGCAAGAAAAGGAAAGCATTATTCTTTGATG 190 || ||||| |||||||||||||||||| ||||||||||||| ||||||||||| ||||| Sbjct 59 TATCGGGTTATCGTGGTGCTTGGTTTCGATGCAAGAAAAGGAGAGCATTATTCTATGATG 118 Query 191 TTGAGTATATTGATTATCCAGGAGAAG-GGATACATTCAACAAAAGTATTTCAACAACTC 249 | |||||| |||||||||| |||| || | |||||| ||||||||||||||||||||||| Sbjct 119 TGGAGTATCTTGATTATCCCGGAG-AGAGTATACATACAACAAAAGTATTTCAACAACTC 177 Query 250 GAAGGCGGAAACGAGAAATGCTTGATGATTCGACCTGTATATCCGCCACAATGTCGTGAA 309 ||||| || | |||||| | | |||||||||||||||||||| | |||||| | |||| Sbjct 178 GAAGGTGGGAGTGAGAAACACCTAATGATTCGACCTGTATATCCACGACAATGCCATGAA 237 Query 310 AATGAAG----T--C---GA---TGGCGGTCTAGAAGAAGCT-CTTGTTGTTCATGGTTC 356 ||||||| | | || ||| ||||||||||||||| | ||||||||||| | Sbjct 238 AATGAAGTCCTTAACAAGGAGGGTGGTGGTCTAGAAGAAGCTGC-TGTTGTTCATGATGA 296 Query 357 TTGGAAGGTTGGTGATTTGGTTGATTGGTGGGAAGCCTATTGTTATTGGTCTGGGACTGT 416 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 297 TTGGAAGGTTGGTGATTTGGTCGATTGGTGGGAAGCCTATTGTTATTGGTCTGGGACGGT 356 Query 417 TCTGGAAGTGAAAGAAAATGAATCAGTACAGATTGAATTGTTGGCTCCACCATATGGCGA 476 |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 357 TCTGGAAGTGAAAGAAAATGGATCAGTACAGATTGAATTGTTGGCTCCACCACATGGCGA 416 Query 477 AGGGAGTAGCTATGAGGCTCA-GTCTAAGGATTTGCGACCATCATTGGAATGGTCACTTG 535 |||||||| |||||| || || |||||||||||||||||||||||||||||||||||||| Sbjct 417 AGGGAGTATCTATGACGC-CATGTCTAAGGATTTGCGACCATCATTGGAATGGTCACTTG 475 Query 536 AAGATGGTTGGACTGTACCTTTTTCTAAGGATGGGGAAAAGAGGCAATGTGCTAAGCTAA 595 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 476 AAGATGGTTGGACTGTACCTTTTTCTAAGGATGGGGAGAAGAGGCAATGTGCTAAGCTAA 535 Query 596 TGAAACAGTTAAATGAAGATCAAGTGAGTGAAGCTGAATCTATGgaagaagaaaagcaga 655 ||||||| || |||||||||||||||| ||| || ||||| |||||||||||| |||||| Sbjct 536 TGAAACATTTGAATGAAGATCAAGTGAATGAGGCCGAATCAATGGAAGAAGAAGAGCAGA 595 Query 656 gaggagccgaacctaaagaagaagaaaagcagagaccgacagaaaagTTGAAAAGCGATG 715 | ||||| ||||||| ||| ||||||||||||||||| ||||| |||||||||| |||| Sbjct 596 GTGGAGCTGAACCTAGAGAGGAAGAAAAGCAGAGACCCACAGAGAAGTTGAAAAAAGATG 655 Query 716 AAGCTCTTCAGTTGAACATCATGGATTCAGAGTCTATCGAAGCTGCTGTCTTGGACTTGG 775 |||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 656 GAGCTCTTCGGTTGAACATCATGGAATCAGAGTCTGTCGAAGCTGCTGTCTTGGACTTGG 715 Query 776 AAGAGATGATTGTTCGTTTCGAGTGGCTGAAAGACATCTTAACTCCTGATTCTTCGGaaa 835 ||||| |||||||||||||||||||| |||||| ||| ||| ||||||||||||| |||| Sbjct 716 AAGAGCTGATTGTTCGTTTCGAGTGGATGAAAGGCATTTTAGCTCCTGATTCTTCAGAAA 775 Query 836 aaaaTTCCTGGATATACGAGGATTATCATCCATCCTCCTCAAGAATGTGA 885 || |||||||||||||||| ||| | |||||||||||||||||| ||| Sbjct 776 AATCTTCCTGGATATACGAGCCTTACCGTCCATCCTCCTCAAGAATCTGA 825 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44870673309 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5